RNA–Protein interactions for RNA: ENST00000418501.5

USP54-203, Transcript of ubiquitin specific peptidase 54, humanhuman

TSL 2

Gene USP54, Length 4,370 nt, Biotype nonsense mediated decay, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP54-203ENST00000418501 EHHADHQ08426 723 aa9.17□□□□□ -0.94
USP54-203ENST00000418501 IER5Q5VY09 327 aa9.17□□□□□ -0.94
USP54-203ENST00000418501 PLEKHH3Q7Z736 793 aa9.17□□□□□ -0.94
USP54-203ENST00000418501 CYP26B1Q9NR63 512 aa9.17□□□□□ -0.94
USP54-203ENST00000418501 HBP1O60381 514 aa9.17□□□□□ -0.94
USP54-203ENST00000418501 ALDH1A1P00352 501 aa9.17□□□□□ -0.94
USP54-203ENST00000418501 SERPING1P05155 500 aa9.17□□□□□ -0.94
USP54-203ENST00000418501 CYP2J2P51589 502 aa9.17□□□□□ -0.94
USP54-203ENST00000418501 PEX3P56589 373 aa9.17□□□□□ -0.94
USP54-203ENST00000418501 MYL7Q01449 175 aa9.17□□□□□ -0.94
USP54-203ENST00000418501 IRF5Q13568 498 aa9.17□□□□□ -0.94
USP54-203ENST00000418501 MTERF2Q49AM1 385 aa9.17□□□□□ -0.94
USP54-203ENST00000418501 TREML2Q5T2D2 321 aa9.17□□□□□ -0.94
USP54-203ENST00000418501 SMYD5Q6GMV2 418 aa9.17□□□□□ -0.94
USP54-203ENST00000418501 ZNF467Q7Z7K2 595 aaPredicted RBP9.17□□□□□ -0.94
USP54-203ENST00000418501 C12orf56Q8IXR9 622 aa9.17□□□□□ -0.94
USP54-203ENST00000418501 CEP112Q8N8E3 955 aa9.17□□□□□ -0.94
USP54-203ENST00000418501 TEX33O43247 280 aa9.17□□□□□ -0.94
USP54-203ENST00000418501 TXNP10599 105 aaKnown RBP9.17□□□□□ -0.94
USP54-203ENST00000418501 YWHAEP62258 255 aaKnown RBP9.17□□□□□ -0.94
USP54-203ENST00000418501 RRAGAQ7L523 313 aa9.17□□□□□ -0.94
USP54-203ENST00000418501 CYFIP1Q7L576 1253 aa9.17□□□□□ -0.94
USP54-203ENST00000418501 PPP1R13BQ96KQ4 1090 aa9.17□□□□□ -0.94
USP54-203ENST00000418501 KCNF1Q9H3M0 494 aa9.17□□□□□ -0.94
USP54-203ENST00000418501 FAM207AQ9NSI2 230 aaPredicted RBP9.17□□□□□ -0.94
USP54-203ENST00000418501 COL20A1Q9P218 1284 aa9.17□□□□□ -0.94
USP54-203ENST00000418501 SLC15A5A6NIM6 579 aa9.16□□□□□ -0.94
USP54-203ENST00000418501 HUNKP57058 714 aa9.16□□□□□ -0.94
USP54-203ENST00000418501 KLHL30Q0D2K2 578 aa9.16□□□□□ -0.94
USP54-203ENST00000418501 KCNH2Q12809 1159 aa9.16□□□□□ -0.94
USP54-203ENST00000418501 RAPGEF1Q13905 1077 aa9.16□□□□□ -0.94
USP54-203ENST00000418501 ZNF484Q5JVG2 852 aa9.16□□□□□ -0.94
USP54-203ENST00000418501 MAEAQ7L5Y9 396 aa9.16□□□□□ -0.94
USP54-203ENST00000418501 TC2NQ8N9U0 490 aa9.16□□□□□ -0.94
USP54-203ENST00000418501 PSPC1Q8WXF1 523 aaKnown RBP9.16□□□□□ -0.94
USP54-203ENST00000418501 SPATA33Q96N06 139 aa9.16□□□□□ -0.94
USP54-203ENST00000418501 HNRNPUL1Q9BUJ2 856 aaKnown RBP eCLIP9.16□□□□□ -0.94
USP54-203ENST00000418501 RRAGCQ9HB90 399 aa9.16□□□□□ -0.94
USP54-203ENST00000418501 PLCB1Q9NQ66 1216 aa9.16□□□□□ -0.94
USP54-203ENST00000418501 BRCA1P38398 1863 aaKnown RBP9.16□□□□□ -0.94
USP54-203ENST00000418501 NPHP3-ACAD11A0A0J9YXS1 232 aa9.16□□□□□ -0.94
USP54-203ENST00000418501 HNRNPDLO14979 420 aaKnown RBP9.16□□□□□ -0.94
USP54-203ENST00000418501 ZEB2O60315 1214 aa9.16□□□□□ -0.94
USP54-203ENST00000418501 NAMPTP43490 491 aa9.16□□□□□ -0.94
USP54-203ENST00000418501 PSMC6P62333 389 aa9.16□□□□□ -0.94
USP54-203ENST00000418501 ITGB3BPQ13352 177 aaPredicted RBP9.16□□□□□ -0.94
USP54-203ENST00000418501 PDCL2Q8N4E4 241 aa9.16□□□□□ -0.94
USP54-203ENST00000418501 POMGNT1Q8WZA1 660 aa9.16□□□□□ -0.94
USP54-203ENST00000418501 TAF4BQ92750 862 aa9.16□□□□□ -0.94
USP54-203ENST00000418501 TCHPQ9BT92 498 aa9.16□□□□□ -0.94
USP54-203ENST00000418501 AP5M1Q9H0R1 490 aa9.16□□□□□ -0.94
USP54-203ENST00000418501 POLR3FQ9H1D9 316 aaPredicted RBP9.16□□□□□ -0.94
USP54-203ENST00000418501 UQCRHLA0A096LP55 91 aa9.16□□□□□ -0.94
USP54-203ENST00000418501 SSU72P8A0A1W2PR75 194 aa9.16□□□□□ -0.94
USP54-203ENST00000418501 K7ERI5 159 aa9.16□□□□□ -0.94
USP54-203ENST00000418501 RPLP2P05387 115 aaKnown RBP9.16□□□□□ -0.94
USP54-203ENST00000418501 UQCRHP07919 91 aa9.16□□□□□ -0.94
USP54-203ENST00000418501 GARTP22102 1010 aa9.16□□□□□ -0.94
USP54-203ENST00000418501 GTF2H1P32780 548 aa9.16□□□□□ -0.94
USP54-203ENST00000418501 EMC2Q15006 297 aa9.16□□□□□ -0.94
USP54-203ENST00000418501 MAP1SQ66K74 1059 aaPredicted RBP9.16□□□□□ -0.94
USP54-203ENST00000418501 ENOSF1Q7L5Y1 443 aa9.16□□□□□ -0.94
USP54-203ENST00000418501 PLPPR4Q7Z2D5 763 aa9.16□□□□□ -0.94
USP54-203ENST00000418501 FAM133AQ8N9E0 248 aa9.16□□□□□ -0.94
USP54-203ENST00000418501 IL31RAQ8NI17 732 aa9.16□□□□□ -0.94
USP54-203ENST00000418501 DNAJC7Q99615 494 aa9.16□□□□□ -0.94
USP54-203ENST00000418501 DNAI1Q9UI46 699 aa9.16□□□□□ -0.94
USP54-203ENST00000418501 ZNF233A6NK53 670 aa9.15□□□□□ -0.94
USP54-203ENST00000418501 SLU7O95391 586 aaKnown RBP9.15□□□□□ -0.94
USP54-203ENST00000418501 KCNA2P16389 499 aa9.15□□□□□ -0.94
USP54-203ENST00000418501 ZNF157P51786 506 aaPredicted RBP9.15□□□□□ -0.94
USP54-203ENST00000418501 BPIFB4P59827 614 aa9.15□□□□□ -0.94
USP54-203ENST00000418501 CLUL1Q15846 466 aa9.15□□□□□ -0.94
USP54-203ENST00000418501 ECM1Q16610 540 aa9.15□□□□□ -0.94
USP54-203ENST00000418501 FAM110CQ1W6H9 321 aa9.15□□□□□ -0.94
USP54-203ENST00000418501 TRIM59Q8IWR1 403 aa9.15□□□□□ -0.94
USP54-203ENST00000418501 JAKMIP2Q96AA8 810 aa9.15□□□□□ -0.94
USP54-203ENST00000418501 ERAP1Q9NZ08 941 aa9.15□□□□□ -0.94
USP54-203ENST00000418501 RIPK3Q9Y572 518 aa9.15□□□□□ -0.94
USP54-203ENST00000418501 DENND3A2RUS2 1198 aa9.15□□□□□ -0.94
USP54-203ENST00000418501 LRRIQ4A6NIV6 560 aa9.15□□□□□ -0.94
USP54-203ENST00000418501 EIF3CLB5ME19 914 aaKnown RBP9.15□□□□□ -0.94
USP54-203ENST00000418501 PHACTR2O75167 634 aa9.15□□□□□ -0.94
USP54-203ENST00000418501 URI1O94763 535 aaPredicted RBP9.15□□□□□ -0.94
USP54-203ENST00000418501 MYBP10242 640 aa9.15□□□□□ -0.94
USP54-203ENST00000418501 PBX1P40424 430 aa9.15□□□□□ -0.94
USP54-203ENST00000418501 TNFAIP2Q03169 654 aa9.15□□□□□ -0.94
USP54-203ENST00000418501 ARSHQ5FYA8 562 aa9.15□□□□□ -0.94
USP54-203ENST00000418501 CCDC122Q5T0U0 273 aa9.15□□□□□ -0.94
USP54-203ENST00000418501 UTP14CQ5TAP6 766 aaKnown RBP9.15□□□□□ -0.94
USP54-203ENST00000418501 EIF3CQ99613 913 aaKnown RBP9.15□□□□□ -0.94
USP54-203ENST00000418501 DHX15O43143 795 aaKnown RBP9.15□□□□□ -0.95
USP54-203ENST00000418501 NMT1P30419 496 aaKnown RBP9.15□□□□□ -0.95
USP54-203ENST00000418501 MFAP3P55082 362 aa9.15□□□□□ -0.95
USP54-203ENST00000418501 TAF1CQ15572 869 aaPredicted RBP9.15□□□□□ -0.95
USP54-203ENST00000418501 SPRYD7Q5W111 196 aa9.15□□□□□ -0.95
USP54-203ENST00000418501 B3GNT9Q6UX72 402 aa9.15□□□□□ -0.95
USP54-203ENST00000418501 PAXIP1Q6ZW49 1069 aaPredicted RBP9.15□□□□□ -0.95
USP54-203ENST00000418501 EPM2AIP1Q7L775 607 aaPredicted RBP9.15□□□□□ -0.95
USP54-203ENST00000418501 CAGE1Q8TC20 777 aa9.15□□□□□ -0.95
Retrieved 100 of 20,778 RNA–protein pairs in 58.6 ms