RNA–Protein interactions for RNA: ENST00000414879.5

PTPRF-205, Transcript of protein tyrosine phosphatase, receptor type F, humanhuman

TSL 2

Gene PTPRF, Length 4,836 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTPRF-205ENST00000414879 TOGARAM2Q6ZUX3 1019 aa12.89□□□□□ -0.35
PTPRF-205ENST00000414879 PROCA1Q8NCQ7 364 aaPredicted RBP12.89□□□□□ -0.35
PTPRF-205ENST00000414879 NXF1Q9UBU9 619 aaKnown RBP12.89□□□□□ -0.35
PTPRF-205ENST00000414879 ZDHHC9Q9Y397 364 aa12.89□□□□□ -0.35
PTPRF-205ENST00000414879 PRPSAP2O60256 369 aa12.89□□□□□ -0.35
PTPRF-205ENST00000414879 RNF40O75150 1001 aa12.89□□□□□ -0.35
PTPRF-205ENST00000414879 RPA1P27694 616 aa12.89□□□□□ -0.35
PTPRF-205ENST00000414879 YWHABP31946 246 aaKnown RBP12.89□□□□□ -0.35
PTPRF-205ENST00000414879 HAUS6Q7Z4H7 955 aa12.89□□□□□ -0.35
PTPRF-205ENST00000414879 EFCAB13Q8IY85 973 aa12.89□□□□□ -0.35
PTPRF-205ENST00000414879 SCFD2Q8WU76 684 aa12.89□□□□□ -0.35
PTPRF-205ENST00000414879 CPVLQ9H3G5 476 aa12.89□□□□□ -0.35
PTPRF-205ENST00000414879 GJB4Q9NTQ9 266 aa12.89□□□□□ -0.35
PTPRF-205ENST00000414879 LIMA1Q9UHB6 759 aaKnown RBP12.89□□□□□ -0.35
PTPRF-205ENST00000414879 P4HA2O15460 535 aa12.88□□□□□ -0.35
PTPRF-205ENST00000414879 HUS1O60921 280 aa12.88□□□□□ -0.35
PTPRF-205ENST00000414879 GABPAQ06546 454 aa12.88□□□□□ -0.35
PTPRF-205ENST00000414879 POTEFA5A3E0 1075 aa12.88□□□□□ -0.35
PTPRF-205ENST00000414879 H7C0C1 242 aa12.88□□□□□ -0.35
PTPRF-205ENST00000414879 TNPO2O14787 897 aaKnown RBP12.88□□□□□ -0.35
PTPRF-205ENST00000414879 SART1O43290 800 aaKnown RBP12.88□□□□□ -0.35
PTPRF-205ENST00000414879 ECEL1O95672 775 aa12.88□□□□□ -0.35
PTPRF-205ENST00000414879 POTEIP0CG38 1075 aa12.88□□□□□ -0.35
PTPRF-205ENST00000414879 ARHGAP25P42331 645 aa12.88□□□□□ -0.35
PTPRF-205ENST00000414879 ATP5OP48047 213 aa12.88□□□□□ -0.35
PTPRF-205ENST00000414879 GTF2A2P52657 109 aa12.88□□□□□ -0.35
PTPRF-205ENST00000414879 RWDD2BP57060 319 aa12.88□□□□□ -0.35
PTPRF-205ENST00000414879 TFDP2Q14188 446 aa12.88□□□□□ -0.35
PTPRF-205ENST00000414879 POTEGQ6S5H5 508 aa12.88□□□□□ -0.35
PTPRF-205ENST00000414879 POTEEQ6S8J3 1075 aa12.88□□□□□ -0.35
PTPRF-205ENST00000414879 VPS52Q8N1B4 723 aa12.88□□□□□ -0.35
PTPRF-205ENST00000414879 FAM149B1Q96BN6 582 aa12.88□□□□□ -0.35
PTPRF-205ENST00000414879 AGXT2Q9BYV1 514 aa12.88□□□□□ -0.35
PTPRF-205ENST00000414879 ELP3Q9H9T3 547 aa12.88□□□□□ -0.35
PTPRF-205ENST00000414879 TUBE1Q9UJT0 475 aa12.88□□□□□ -0.35
PTPRF-205ENST00000414879 PPAN-P2RY11A0A0B4J1V8 794 aaPredicted RBP12.88□□□□□ -0.35
PTPRF-205ENST00000414879 NDUFAB1O14561 156 aa12.88□□□□□ -0.35
PTPRF-205ENST00000414879 LRRN2O75325 713 aa12.88□□□□□ -0.35
PTPRF-205ENST00000414879 TXNP10599 105 aaKnown RBP12.88□□□□□ -0.35
PTPRF-205ENST00000414879 ERO1BQ86YB8 467 aa12.88□□□□□ -0.35
PTPRF-205ENST00000414879 RFX6Q8HWS3 928 aa12.88□□□□□ -0.35
PTPRF-205ENST00000414879 GPRC5AQ8NFJ5 357 aa12.88□□□□□ -0.35
PTPRF-205ENST00000414879 PPANQ9NQ55 473 aaKnown RBP12.88□□□□□ -0.35
PTPRF-205ENST00000414879 BCAP29Q9UHQ4 241 aa12.88□□□□□ -0.35
PTPRF-205ENST00000414879 SYNGAP1Q96PV0 1343 aa12.88□□□□□ -0.35
PTPRF-205ENST00000414879 NFAT5O94916 1531 aa12.88□□□□□ -0.35
PTPRF-205ENST00000414879 BAATQ14032 418 aaPredicted RBP12.88□□□□□ -0.35
PTPRF-205ENST00000414879 ZNF699Q32M78 642 aa12.88□□□□□ -0.35
PTPRF-205ENST00000414879 TTBK2Q6IQ55 1244 aa12.88□□□□□ -0.35
PTPRF-205ENST00000414879 ZNF746Q6NUN9 644 aaPredicted RBP12.88□□□□□ -0.35
PTPRF-205ENST00000414879 HEXIM2Q96MH2 286 aaKnown RBP12.88□□□□□ -0.35
PTPRF-205ENST00000414879 RRN3P2A6NIE6 340 aa12.87□□□□□ -0.35
PTPRF-205ENST00000414879 TAF1CQ15572 869 aaPredicted RBP12.87□□□□□ -0.35
PTPRF-205ENST00000414879 DUOXA2Q1HG44 320 aa12.87□□□□□ -0.35
PTPRF-205ENST00000414879 TRIM42Q8IWZ5 723 aa12.87□□□□□ -0.35
PTPRF-205ENST00000414879 RNF139Q8WU17 664 aa12.87□□□□□ -0.35
PTPRF-205ENST00000414879 ANKS1AQ92625 1134 aa12.87□□□□□ -0.35
PTPRF-205ENST00000414879 DPF2Q92785 391 aa12.87□□□□□ -0.35
PTPRF-205ENST00000414879 ABHD10Q9NUJ1 306 aa12.87□□□□□ -0.35
PTPRF-205ENST00000414879 ITIH6Q6UXX5 1313 aa12.87□□□□□ -0.35
PTPRF-205ENST00000414879 PODXLO00592 558 aa12.87□□□□□ -0.35
PTPRF-205ENST00000414879 SLC16A4O15374 487 aa12.87□□□□□ -0.35
PTPRF-205ENST00000414879 GPC5P78333 572 aa12.87□□□□□ -0.35
PTPRF-205ENST00000414879 SGO2Q562F6 1265 aa12.87□□□□□ -0.35
PTPRF-205ENST00000414879 MUM1L1Q5H9M0 696 aa12.87□□□□□ -0.35
PTPRF-205ENST00000414879 WHAMMQ8TF30 809 aa12.87□□□□□ -0.35
PTPRF-205ENST00000414879 CHAMP1Q96JM3 812 aa12.87□□□□□ -0.35
PTPRF-205ENST00000414879 GCNAQ96QF7 691 aa12.87□□□□□ -0.35
PTPRF-205ENST00000414879 IDI2Q9BXS1 227 aa12.87□□□□□ -0.35
PTPRF-205ENST00000414879 MROH8Q9H579 483 aa12.87□□□□□ -0.35
PTPRF-205ENST00000414879 TMX2Q9Y320 296 aa12.87□□□□□ -0.35
PTPRF-205ENST00000414879 TROVE2P10155 538 aaKnown RBP eCLIP12.87□□□□□ -0.35
PTPRF-205ENST00000414879 MARK3P27448 753 aa12.87□□□□□ -0.35
PTPRF-205ENST00000414879 GUCY1A2P33402 732 aa12.87□□□□□ -0.35
PTPRF-205ENST00000414879 RASSF2P50749 326 aa12.87□□□□□ -0.35
PTPRF-205ENST00000414879 NME8Q8N427 588 aa12.87□□□□□ -0.35
PTPRF-205ENST00000414879 FAM49AQ9H0Q0 323 aaPredicted RBP12.87□□□□□ -0.35
PTPRF-205ENST00000414879 ELF1P32519 619 aa12.87□□□□□ -0.35
PTPRF-205ENST00000414879 HPDP32754 393 aaPredicted RBP12.87□□□□□ -0.35
PTPRF-205ENST00000414879 TSPY1Q01534 308 aa12.87□□□□□ -0.35
PTPRF-205ENST00000414879 CUL1Q13616 776 aa12.87□□□□□ -0.35
PTPRF-205ENST00000414879 OR6B2Q6IFH4 312 aa12.87□□□□□ -0.35
PTPRF-205ENST00000414879 FAM71BQ8TC56 605 aa12.87□□□□□ -0.35
PTPRF-205ENST00000414879 TTC1Q99614 292 aa12.87□□□□□ -0.35
PTPRF-205ENST00000414879 MAD2L2Q9UI95 211 aa12.87□□□□□ -0.35
PTPRF-205ENST00000414879 LTN1O94822 1766 aa12.87□□□□□ -0.35
PTPRF-205ENST00000414879 HIP1RO75146 1068 aa12.86□□□□□ -0.35
PTPRF-205ENST00000414879 CIB2O75838 187 aa12.86□□□□□ -0.35
PTPRF-205ENST00000414879 KRT1P04264 644 aa12.86□□□□□ -0.35
PTPRF-205ENST00000414879 KPNA2P52292 529 aaKnown RBP12.86□□□□□ -0.35
PTPRF-205ENST00000414879 ASPHQ12797 758 aa12.86□□□□□ -0.35
PTPRF-205ENST00000414879 LAMC2Q13753 1193 aa12.86□□□□□ -0.35
PTPRF-205ENST00000414879 THNSL1Q8IYQ7 743 aa12.86□□□□□ -0.35
PTPRF-205ENST00000414879 ADSSL1Q8N142 457 aa12.86□□□□□ -0.35
PTPRF-205ENST00000414879 SMC1BQ8NDV3 1235 aa12.86□□□□□ -0.35
PTPRF-205ENST00000414879 FBXL13Q8NEE6 735 aa12.86□□□□□ -0.35
PTPRF-205ENST00000414879 MOV10L1Q9BXT6 1211 aaKnown RBP12.86□□□□□ -0.35
PTPRF-205ENST00000414879 CCDC68Q9H2F9 335 aa12.86□□□□□ -0.35
PTPRF-205ENST00000414879 RRAGDQ9NQL2 400 aaPredicted RBP12.86□□□□□ -0.35
PTPRF-205ENST00000414879 ASNSD1Q9NWL6 643 aa12.86□□□□□ -0.35
Retrieved 100 of 20,778 RNA–protein pairs in 17.7 ms