RNA–Protein interactions for RNA: ENST00000403076.5

SDC1-203, Transcript of syndecan 1, humanhuman

TSL 1 (best) BASIC

Gene SDC1, Length 1,523 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SDC1-203ENST00000403076 RHOBTB3O94955 611 aa19.99■□□□□ 0.79
SDC1-203ENST00000403076 GJA8P48165 433 aa19.99■□□□□ 0.79
SDC1-203ENST00000403076 ODR4Q5SWX8 454 aa19.99■□□□□ 0.79
SDC1-203ENST00000403076 MARCH8Q5T0T0 291 aa19.99■□□□□ 0.79
SDC1-203ENST00000403076 DAW1Q8N136 415 aa19.99■□□□□ 0.79
SDC1-203ENST00000403076 TRIML1Q8N9V2 468 aa19.99■□□□□ 0.79
SDC1-203ENST00000403076 SCN10AQ9Y5Y9 1956 aa19.99■□□□□ 0.79
SDC1-203ENST00000403076 A0A0U1RQG5 324 aaPredicted RBP19.98■□□□□ 0.79
SDC1-203ENST00000403076 FRMD3A2A2Y4 597 aa19.98■□□□□ 0.79
SDC1-203ENST00000403076 CCDC192P0DO97 292 aa19.98■□□□□ 0.79
SDC1-203ENST00000403076 CYP2C9P11712 490 aa19.98■□□□□ 0.79
SDC1-203ENST00000403076 PLS3P13797 630 aa19.98■□□□□ 0.79
SDC1-203ENST00000403076 CLCN3P51790 818 aa19.98■□□□□ 0.79
SDC1-203ENST00000403076 ZNF200P98182 395 aaPredicted RBP19.98■□□□□ 0.79
SDC1-203ENST00000403076 PSMD2Q13200 908 aa19.98■□□□□ 0.79
SDC1-203ENST00000403076 FAM26FQ5R3K3 315 aa19.98■□□□□ 0.79
SDC1-203ENST00000403076 MAP7D2Q96T17 732 aa19.98■□□□□ 0.79
SDC1-203ENST00000403076 SUCLA2Q9P2R7 463 aaPredicted RBP19.98■□□□□ 0.79
SDC1-203ENST00000403076 SEL1LQ9UBV2 794 aa19.98■□□□□ 0.79
SDC1-203ENST00000403076 GTF2IRD1Q9UHL9 959 aa19.98■□□□□ 0.79
SDC1-203ENST00000403076 GRIN2DO15399 1336 aa19.98■□□□□ 0.79
SDC1-203ENST00000403076 TREHO43280 583 aa19.97■□□□□ 0.79
SDC1-203ENST00000403076 ZNF131P52739 623 aa19.97■□□□□ 0.79
SDC1-203ENST00000403076 PEX3P56589 373 aa19.97■□□□□ 0.79
SDC1-203ENST00000403076 NLRP12P59046 1061 aa19.97■□□□□ 0.79
SDC1-203ENST00000403076 PTPN11Q06124 597 aaPredicted RBP19.97■□□□□ 0.79
SDC1-203ENST00000403076 DMP1Q13316 513 aaPredicted RBP19.97■□□□□ 0.79
SDC1-203ENST00000403076 MORC3Q14149 939 aa19.97■□□□□ 0.79
SDC1-203ENST00000403076 FAM178BQ8IXR5 827 aa19.97■□□□□ 0.79
SDC1-203ENST00000403076 PRPF31Q8WWY3 499 aaKnown RBP19.97■□□□□ 0.79
SDC1-203ENST00000403076 PSPC1Q8WXF1 523 aaKnown RBP19.97■□□□□ 0.79
SDC1-203ENST00000403076 HPS3Q969F9 1004 aa19.97■□□□□ 0.79
SDC1-203ENST00000403076 GTPBP4Q9BZE4 634 aaKnown RBP19.97■□□□□ 0.79
SDC1-203ENST00000403076 SENP6Q9GZR1 1112 aaPredicted RBP19.97■□□□□ 0.79
SDC1-203ENST00000403076 MRPL44Q9H9J2 332 aaKnown RBP19.97■□□□□ 0.79
SDC1-203ENST00000403076 SLC39A2Q9NP94 309 aa19.97■□□□□ 0.79
SDC1-203ENST00000403076 AKT3Q9Y243 479 aa19.97■□□□□ 0.79
SDC1-203ENST00000403076 HTTP42858 3142 aa19.97■□□□□ 0.79
SDC1-203ENST00000403076 CCDC169A6NNP5 214 aa19.97■□□□□ 0.79
SDC1-203ENST00000403076 ARL2P36404 184 aa19.97■□□□□ 0.79
SDC1-203ENST00000403076 SMTNP53814 917 aa19.97■□□□□ 0.79
SDC1-203ENST00000403076 TYRO3Q06418 890 aa19.97■□□□□ 0.79
SDC1-203ENST00000403076 MKRN4PQ13434 485 aaPredicted RBP19.97■□□□□ 0.79
SDC1-203ENST00000403076 DRP2Q13474 957 aa19.97■□□□□ 0.79
SDC1-203ENST00000403076 HIC1Q14526 733 aa19.97■□□□□ 0.79
SDC1-203ENST00000403076 PPP2R5AQ15172 486 aa19.97■□□□□ 0.79
SDC1-203ENST00000403076 STX1AQ16623 288 aa19.97■□□□□ 0.79
SDC1-203ENST00000403076 ZNF658Q5TYW1 1059 aaPredicted RBP19.97■□□□□ 0.79
SDC1-203ENST00000403076 GDF6Q6KF10 455 aaPredicted RBP19.97■□□□□ 0.79
SDC1-203ENST00000403076 SESTD1Q86VW0 696 aa19.97■□□□□ 0.79
SDC1-203ENST00000403076 FAM49AQ9H0Q0 323 aaPredicted RBP19.97■□□□□ 0.79
SDC1-203ENST00000403076 C17orf75Q9HAS0 396 aa19.97■□□□□ 0.79
SDC1-203ENST00000403076 ANO10Q9NW15 660 aa19.97■□□□□ 0.79
SDC1-203ENST00000403076 NOD1Q9Y239 953 aa19.97■□□□□ 0.79
SDC1-203ENST00000403076 PCDHA2Q9Y5H9 948 aa19.97■□□□□ 0.79
SDC1-203ENST00000403076 SMIM35A0A1B0GVV1 85 aa19.96■□□□□ 0.79
SDC1-203ENST00000403076 MBLAC1A4D2B0 266 aaPredicted RBP19.96■□□□□ 0.79
SDC1-203ENST00000403076 RTP1P59025 263 aa19.96■□□□□ 0.79
SDC1-203ENST00000403076 ADAM17P78536 824 aa19.96■□□□□ 0.79
SDC1-203ENST00000403076 MXD4Q14582 209 aaPredicted RBP19.96■□□□□ 0.79
SDC1-203ENST00000403076 RHPN2Q8IUC4 686 aa19.96■□□□□ 0.79
SDC1-203ENST00000403076 ANKLE1Q8NAG6 615 aa19.96■□□□□ 0.79
SDC1-203ENST00000403076 ASAP3Q8TDY4 903 aa19.96■□□□□ 0.79
SDC1-203ENST00000403076 KMT5AQ9NQR1 393 aa19.96■□□□□ 0.79
SDC1-203ENST00000403076 KCNG1Q9UIX4 513 aa19.96■□□□□ 0.79
SDC1-203ENST00000403076 GDAQ9Y2T3 454 aa19.96■□□□□ 0.79
SDC1-203ENST00000403076 LRRIQ4A6NIV6 560 aa19.95■□□□□ 0.78
SDC1-203ENST00000403076 ARVCFO00192 962 aa19.95■□□□□ 0.78
SDC1-203ENST00000403076 ASAP2O43150 1006 aa19.95■□□□□ 0.78
SDC1-203ENST00000403076 CAPN2P17655 700 aa19.95■□□□□ 0.78
SDC1-203ENST00000403076 GLRA2P23416 452 aa19.95■□□□□ 0.78
SDC1-203ENST00000403076 HOXC8P31273 242 aa19.95■□□□□ 0.78
SDC1-203ENST00000403076 EHHADHQ08426 723 aa19.95■□□□□ 0.78
SDC1-203ENST00000403076 STK4Q13043 487 aa19.95■□□□□ 0.78
SDC1-203ENST00000403076 PTGISQ16647 500 aa19.95■□□□□ 0.78
SDC1-203ENST00000403076 RUFY4Q6ZNE9 571 aa19.95■□□□□ 0.78
SDC1-203ENST00000403076 SMYD4Q8IYR2 804 aaPredicted RBP19.95■□□□□ 0.78
SDC1-203ENST00000403076 BSNDQ8WZ55 320 aa19.95■□□□□ 0.78
SDC1-203ENST00000403076 SEZ6LQ9BYH1 1024 aa19.95■□□□□ 0.78
SDC1-203ENST00000403076 OLFML3Q9NRN5 406 aa19.95■□□□□ 0.78
SDC1-203ENST00000403076 K7ENM7 598 aa19.94■□□□□ 0.78
SDC1-203ENST00000403076 SLC16A4O15374 487 aa19.94■□□□□ 0.78
SDC1-203ENST00000403076 GCNT3O95395 438 aa19.94■□□□□ 0.78
SDC1-203ENST00000403076 SRGAP2CP0DJJ0 459 aa19.94■□□□□ 0.78
SDC1-203ENST00000403076 NMT1P30419 496 aaKnown RBP19.94■□□□□ 0.78
SDC1-203ENST00000403076 NPTX2P47972 431 aa19.94■□□□□ 0.78
SDC1-203ENST00000403076 LAMTOR4Q0VGL1 99 aa19.94■□□□□ 0.78
SDC1-203ENST00000403076 STIM1Q13586 685 aa19.94■□□□□ 0.78
SDC1-203ENST00000403076 TFDP1Q14186 410 aa19.94■□□□□ 0.78
SDC1-203ENST00000403076 L1TD1Q5T7N2 865 aaKnown RBP19.94■□□□□ 0.78
SDC1-203ENST00000403076 TAF2Q6P1X5 1199 aa19.94■□□□□ 0.78
SDC1-203ENST00000403076 LRSAM1Q6UWE0 723 aa19.94■□□□□ 0.78
SDC1-203ENST00000403076 STXBP4Q6ZWJ1 553 aa19.94■□□□□ 0.78
SDC1-203ENST00000403076 KIAA0319LQ8IZA0 1049 aa19.94■□□□□ 0.78
SDC1-203ENST00000403076 LINC01465Q8N7H1 131 aa19.94■□□□□ 0.78
SDC1-203ENST00000403076 DNAJB3Q8WWF6 145 aa19.94■□□□□ 0.78
SDC1-203ENST00000403076 SCLT1Q96NL6 688 aa19.94■□□□□ 0.78
SDC1-203ENST00000403076 EVPLQ92817 2033 aa19.94■□□□□ 0.78
SDC1-203ENST00000403076 MYH11P35749 1972 aa19.93■□□□□ 0.78
SDC1-203ENST00000403076 VTNP04004 478 aa19.93■□□□□ 0.78
Retrieved 100 of 20,778 RNA–protein pairs in 32.7 ms