RNA–Protein interactions for RNA: ENST00000393310.5

LIMS1-203, Transcript of LIM zinc finger domain containing 1, humanhuman

APPRIS P3 TSL 1 (best) BASIC

Gene LIMS1, Length 4,392 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMS1-203ENST00000393310 ANKRD33Q7Z3H0 272 aa8.86□□□□□ -0.99
LIMS1-203ENST00000393310 PLA2G4DQ86XP0 818 aa8.86□□□□□ -0.99
LIMS1-203ENST00000393310 GMCL1P1Q8NEA9 526 aa8.86□□□□□ -0.99
LIMS1-203ENST00000393310 ZFP37Q9Y6Q3 630 aaPredicted RBP8.86□□□□□ -0.99
LIMS1-203ENST00000393310 SBF2Q86WG5 1849 aa8.86□□□□□ -0.99
LIMS1-203ENST00000393310 CXCL14O95715 111 aa8.86□□□□□ -0.99
LIMS1-203ENST00000393310 ITGB8P26012 769 aa8.86□□□□□ -0.99
LIMS1-203ENST00000393310 ZNF394Q53GI3 561 aa8.86□□□□□ -0.99
LIMS1-203ENST00000393310 GPAT2Q6NUI2 795 aa8.86□□□□□ -0.99
LIMS1-203ENST00000393310 CCDC89Q8N998 374 aa8.86□□□□□ -0.99
LIMS1-203ENST00000393310 NSUN7Q8NE18 718 aaKnown RBP8.86□□□□□ -0.99
LIMS1-203ENST00000393310 UCMAQ8WVF2 138 aa8.86□□□□□ -0.99
LIMS1-203ENST00000393310 GMCL1Q96IK5 515 aa8.86□□□□□ -0.99
LIMS1-203ENST00000393310 PHF7Q9BWX1 381 aaPredicted RBP8.86□□□□□ -0.99
LIMS1-203ENST00000393310 EMILIN3Q9NT22 766 aa8.86□□□□□ -0.99
LIMS1-203ENST00000393310 ARFGEF1Q9Y6D6 1849 aa8.85□□□□□ -0.99
LIMS1-203ENST00000393310 RNF8O76064 485 aa8.85□□□□□ -0.99
LIMS1-203ENST00000393310 SFNP31947 248 aa8.85□□□□□ -0.99
LIMS1-203ENST00000393310 GJA5P36382 358 aa8.85□□□□□ -0.99
LIMS1-203ENST00000393310 CCDC40Q4G0X9 1142 aa8.85□□□□□ -0.99
LIMS1-203ENST00000393310 HSP90AA5PQ58FG0 334 aa8.85□□□□□ -0.99
LIMS1-203ENST00000393310 AKAP7Q9P0M2 348 aaPredicted RBP8.85□□□□□ -0.99
LIMS1-203ENST00000393310 SEL1LQ9UBV2 794 aa8.85□□□□□ -0.99
LIMS1-203ENST00000393310 H3BQV1 296 aa8.85□□□□□ -0.99
LIMS1-203ENST00000393310 ADCY6O43306 1168 aa8.85□□□□□ -0.99
LIMS1-203ENST00000393310 E2F6O75461 281 aa8.85□□□□□ -0.99
LIMS1-203ENST00000393310 GLUD1P00367 558 aa8.85□□□□□ -0.99
LIMS1-203ENST00000393310 ADD2P35612 726 aa8.85□□□□□ -0.99
LIMS1-203ENST00000393310 ALDH5A1P51649 535 aaPredicted RBP8.85□□□□□ -0.99
LIMS1-203ENST00000393310 CLUL1Q15846 466 aa8.85□□□□□ -0.99
LIMS1-203ENST00000393310 TTC19Q6DKK2 380 aaPredicted RBP8.85□□□□□ -0.99
LIMS1-203ENST00000393310 ITIH5Q86UX2 942 aa8.85□□□□□ -0.99
LIMS1-203ENST00000393310 ADHFE1Q8IWW8 467 aa8.85□□□□□ -0.99
LIMS1-203ENST00000393310 IQCF2Q8IXL9 164 aa8.85□□□□□ -0.99
LIMS1-203ENST00000393310 CEP57L1Q8IYX8 460 aa8.85□□□□□ -0.99
LIMS1-203ENST00000393310 SAAL1Q96ER3 474 aa8.85□□□□□ -0.99
LIMS1-203ENST00000393310 TMEM87BQ96K49 555 aa8.85□□□□□ -0.99
LIMS1-203ENST00000393310 TMEM117Q9H0C3 514 aa8.85□□□□□ -0.99
LIMS1-203ENST00000393310 TMEM221A6NGB7 291 aa8.85□□□□□ -0.99
LIMS1-203ENST00000393310 SMTNL1A8MU46 457 aa8.85□□□□□ -0.99
LIMS1-203ENST00000393310 KLRF2D3W0D1 207 aa8.85□□□□□ -0.99
LIMS1-203ENST00000393310 M0R296 226 aa8.85□□□□□ -0.99
LIMS1-203ENST00000393310 PFDN1O60925 122 aa8.85□□□□□ -0.99
LIMS1-203ENST00000393310 IRS1P35568 1242 aa8.85□□□□□ -0.99
LIMS1-203ENST00000393310 STAT5BP51692 787 aa8.85□□□□□ -0.99
LIMS1-203ENST00000393310 KIZQ2M2Z5 673 aa8.85□□□□□ -0.99
LIMS1-203ENST00000393310 TMEM240Q5SV17 173 aa8.85□□□□□ -0.99
LIMS1-203ENST00000393310 TMEM57Q8N5G2 664 aa8.85□□□□□ -0.99
LIMS1-203ENST00000393310 CCDC110Q8TBZ0 833 aa8.85□□□□□ -0.99
LIMS1-203ENST00000393310 PABPC5Q96DU9 382 aaKnown RBP8.85□□□□□ -0.99
LIMS1-203ENST00000393310 GPR88Q9GZN0 384 aa8.85□□□□□ -0.99
LIMS1-203ENST00000393310 ZW10O43264 779 aa8.84□□□□□ -0.99
LIMS1-203ENST00000393310 RHOBTB1O94844 696 aa8.84□□□□□ -0.99
LIMS1-203ENST00000393310 SSBP05455 408 aaKnown RBP eCLIP8.84□□□□□ -0.99
LIMS1-203ENST00000393310 RTN1Q16799 776 aa8.84□□□□□ -0.99
LIMS1-203ENST00000393310 LEXMQ3ZCV2 418 aa8.84□□□□□ -0.99
LIMS1-203ENST00000393310 SPECC1Q5M775 1068 aa8.84□□□□□ -0.99
LIMS1-203ENST00000393310 OLFML1Q6UWY5 402 aa8.84□□□□□ -0.99
LIMS1-203ENST00000393310 CMTR2Q8IYT2 770 aaKnown RBP8.84□□□□□ -0.99
LIMS1-203ENST00000393310 SMG7Q92540 1137 aaKnown RBP8.84□□□□□ -0.99
LIMS1-203ENST00000393310 RUBCNQ92622 972 aa8.84□□□□□ -0.99
LIMS1-203ENST00000393310 TEPSINQ96N21 525 aa8.84□□□□□ -0.99
LIMS1-203ENST00000393310 R3HDMLQ9H3Y0 253 aa8.84□□□□□ -0.99
LIMS1-203ENST00000393310 SORCS3Q9UPU3 1222 aa8.84□□□□□ -0.99
LIMS1-203ENST00000393310 LY75O60449 1722 aa8.84□□□□□ -0.99
LIMS1-203ENST00000393310 BICDL2A1A5D9 508 aa8.84□□□□□ -0.99
LIMS1-203ENST00000393310 COL6A1P12109 1028 aa8.84□□□□□ -0.99
LIMS1-203ENST00000393310 CCT2P78371 535 aaKnown RBP8.84□□□□□ -0.99
LIMS1-203ENST00000393310 NAA30Q147X3 362 aaPredicted RBP8.84□□□□□ -0.99
LIMS1-203ENST00000393310 RNF187Q5TA31 235 aaPredicted RBP8.84□□□□□ -0.99
LIMS1-203ENST00000393310 ZNF512Q96ME7 567 aaPredicted RBP8.84□□□□□ -0.99
LIMS1-203ENST00000393310 BRD9Q9H8M2 597 aa8.84□□□□□ -0.99
LIMS1-203ENST00000393310 ITGA4P13612 1032 aa8.84□□□□□ -0.99
LIMS1-203ENST00000393310 SUZ12Q15022 739 aaKnown RBP8.84□□□□□ -0.99
LIMS1-203ENST00000393310 DISC1Q9NRI5 854 aa8.84□□□□□ -0.99
LIMS1-203ENST00000393310 SFMBT1Q9UHJ3 866 aa8.84□□□□□ -0.99
LIMS1-203ENST00000393310 RPSAP08865 295 aaKnown RBP8.84□□□□□ -0.99
LIMS1-203ENST00000393310 XRCC6P12956 609 aaKnown RBP eCLIP8.84□□□□□ -0.99
LIMS1-203ENST00000393310 TRAPPC10P48553 1259 aa8.84□□□□□ -0.99
LIMS1-203ENST00000393310 KYAT1Q16773 422 aa8.84□□□□□ -0.99
LIMS1-203ENST00000393310 CCDC121Q6ZUS5 278 aa8.84□□□□□ -0.99
LIMS1-203ENST00000393310 APPL2Q8NEU8 664 aa8.84□□□□□ -0.99
LIMS1-203ENST00000393310 GPRASP2Q96D09 838 aa8.84□□□□□ -0.99
LIMS1-203ENST00000393310 C2orf40Q9H1Z8 148 aa8.84□□□□□ -0.99
LIMS1-203ENST00000393310 RUBCNLQ9H714 662 aa8.84□□□□□ -0.99
LIMS1-203ENST00000393310 TLR9Q9NR96 1032 aa8.84□□□□□ -0.99
LIMS1-203ENST00000393310 SLC38A7Q9NVC3 462 aa8.84□□□□□ -0.99
LIMS1-203ENST00000393310 MTMR4Q9NYA4 1195 aa8.84□□□□□ -0.99
LIMS1-203ENST00000393310 EIF2AK3Q9NZJ5 1116 aaKnown RBP8.84□□□□□ -0.99
LIMS1-203ENST00000393310 CHMP5Q9NZZ3 219 aa8.84□□□□□ -0.99
LIMS1-203ENST00000393310 ATRNL1Q5VV63 1379 aa8.83□□□□□ -1
LIMS1-203ENST00000393310 GAS2O43903 313 aaKnown RBP8.83□□□□□ -1
LIMS1-203ENST00000393310 LMNAP02545 664 aaKnown RBP8.83□□□□□ -1
LIMS1-203ENST00000393310 GHRP10912 638 aa8.83□□□□□ -1
LIMS1-203ENST00000393310 BMPR1AP36894 532 aa8.83□□□□□ -1
LIMS1-203ENST00000393310 BFSP1Q12934 665 aa8.83□□□□□ -1
LIMS1-203ENST00000393310 HNRNPDQ14103 355 aaKnown RBP8.83□□□□□ -1
LIMS1-203ENST00000393310 MAP7Q14244 749 aa8.83□□□□□ -1
LIMS1-203ENST00000393310 GRIN2CQ14957 1233 aa8.83□□□□□ -1
LIMS1-203ENST00000393310 LUZP1Q86V48 1076 aa8.83□□□□□ -1
Retrieved 100 of 20,778 RNA–protein pairs in 39.3 ms