RNA–Protein interactions for RNA: ENST00000392003.6

COL6A3-204, Transcript of collagen type VI alpha 3 chain, humanhuman

TSL 2 BASIC

Gene COL6A3, Length 3,464 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL6A3-204ENST00000392003 CAP2P40123 477 aa10.51□□□□□ -0.73
COL6A3-204ENST00000392003 GMPSP49915 693 aaPredicted RBP10.51□□□□□ -0.73
COL6A3-204ENST00000392003 APBA1Q02410 837 aa10.51□□□□□ -0.73
COL6A3-204ENST00000392003 SYCP3Q8IZU3 236 aa10.51□□□□□ -0.73
COL6A3-204ENST00000392003 CCDC43Q96MW1 224 aaKnown RBP10.51□□□□□ -0.73
COL6A3-204ENST00000392003 ETAA1Q9NY74 926 aa10.51□□□□□ -0.73
COL6A3-204ENST00000392003 GCNT4Q9P109 453 aa10.51□□□□□ -0.73
COL6A3-204ENST00000392003 CNOT7Q9UIV1 285 aaKnown RBP10.51□□□□□ -0.73
COL6A3-204ENST00000392003 ANKRD33BA6NCL7 494 aa10.5□□□□□ -0.73
COL6A3-204ENST00000392003 PSMD10O75832 226 aa10.5□□□□□ -0.73
COL6A3-204ENST00000392003 PON1P27169 355 aa10.5□□□□□ -0.73
COL6A3-204ENST00000392003 PPP2R5CQ13362 524 aa10.5□□□□□ -0.73
COL6A3-204ENST00000392003 EPHA7Q15375 998 aa10.5□□□□□ -0.73
COL6A3-204ENST00000392003 FKBP1CQ5VVH2 108 aa10.5□□□□□ -0.73
COL6A3-204ENST00000392003 SLC5A5Q92911 643 aa10.5□□□□□ -0.73
COL6A3-204ENST00000392003 RUFY1Q96T51 708 aa10.5□□□□□ -0.73
COL6A3-204ENST00000392003 HSD17B14Q9BPX1 270 aa10.5□□□□□ -0.73
COL6A3-204ENST00000392003 WDR18Q9BV38 432 aa10.5□□□□□ -0.73
COL6A3-204ENST00000392003 TLR10Q9BXR5 811 aa10.5□□□□□ -0.73
COL6A3-204ENST00000392003 MAF1Q9H063 256 aa10.5□□□□□ -0.73
COL6A3-204ENST00000392003 RANBP17Q9H2T7 1088 aaKnown RBP10.5□□□□□ -0.73
COL6A3-204ENST00000392003 HOMER2Q9NSB8 354 aa10.5□□□□□ -0.73
COL6A3-204ENST00000392003 PSD3Q9NYI0 1048 aa10.5□□□□□ -0.73
COL6A3-204ENST00000392003 TCEAL9Q9UHQ7 104 aa10.5□□□□□ -0.73
COL6A3-204ENST00000392003 SLITRK3O94933 977 aa10.5□□□□□ -0.73
COL6A3-204ENST00000392003 FTCDO95954 541 aa10.5□□□□□ -0.73
COL6A3-204ENST00000392003 KLRC1P26715 233 aa10.5□□□□□ -0.73
COL6A3-204ENST00000392003 GLE1Q53GS7 698 aaKnown RBP10.5□□□□□ -0.73
COL6A3-204ENST00000392003 ZNF572Q7Z3I7 529 aaPredicted RBP10.5□□□□□ -0.73
COL6A3-204ENST00000392003 LDHDQ86WU2 507 aa10.5□□□□□ -0.73
COL6A3-204ENST00000392003 CCDC125Q86Z20 511 aa10.5□□□□□ -0.73
COL6A3-204ENST00000392003 GOLGA5Q8TBA6 731 aa10.5□□□□□ -0.73
COL6A3-204ENST00000392003 LMBR1Q8WVP7 490 aa10.5□□□□□ -0.73
COL6A3-204ENST00000392003 GDAP1L1Q96MZ0 367 aa10.5□□□□□ -0.73
COL6A3-204ENST00000392003 PAIP2Q9BPZ3 127 aaKnown RBP10.5□□□□□ -0.73
COL6A3-204ENST00000392003 LRRC1Q9BTT6 524 aa10.5□□□□□ -0.73
COL6A3-204ENST00000392003 SELENOOQ9BVL4 669 aa10.5□□□□□ -0.73
COL6A3-204ENST00000392003 FBXO28Q9NVF7 368 aa10.5□□□□□ -0.73
COL6A3-204ENST00000392003 CWC15Q9P013 229 aaKnown RBP10.5□□□□□ -0.73
COL6A3-204ENST00000392003 SALL4Q9UJQ4 1053 aa10.5□□□□□ -0.73
COL6A3-204ENST00000392003 MYH10P35580 1976 aa10.5□□□□□ -0.73
COL6A3-204ENST00000392003 GOLGA6CA6NDK9 693 aa10.5□□□□□ -0.73
COL6A3-204ENST00000392003 GOLGA6BA6NDN3 693 aa10.5□□□□□ -0.73
COL6A3-204ENST00000392003 GOLGA6DP0CG33 693 aa10.5□□□□□ -0.73
COL6A3-204ENST00000392003 FERP16591 822 aa10.5□□□□□ -0.73
COL6A3-204ENST00000392003 ANXA13P27216 316 aa10.5□□□□□ -0.73
COL6A3-204ENST00000392003 NMT1P30419 496 aaKnown RBP10.5□□□□□ -0.73
COL6A3-204ENST00000392003 MAGEA9P43362 315 aa10.5□□□□□ -0.73
COL6A3-204ENST00000392003 RPS6KA1Q15418 735 aa10.5□□□□□ -0.73
COL6A3-204ENST00000392003 ODR4Q5SWX8 454 aa10.5□□□□□ -0.73
COL6A3-204ENST00000392003 SND1Q7KZF4 910 aaKnown RBP eCLIP10.5□□□□□ -0.73
COL6A3-204ENST00000392003 FMNL3Q8IVF7 1028 aa10.5□□□□□ -0.73
COL6A3-204ENST00000392003 ARL10Q8N8L6 244 aa10.5□□□□□ -0.73
COL6A3-204ENST00000392003 GOLGA6AQ9NYA3 693 aa10.5□□□□□ -0.73
COL6A3-204ENST00000392003 KCND2Q9NZV8 630 aa10.5□□□□□ -0.73
COL6A3-204ENST00000392003 CCPG1Q9ULG6 757 aa10.5□□□□□ -0.73
COL6A3-204ENST00000392003 ODF2LQ9ULJ1 636 aa10.5□□□□□ -0.73
COL6A3-204ENST00000392003 ASTN1O14525 1302 aa10.5□□□□□ -0.73
COL6A3-204ENST00000392003 N4BP1O75113 896 aaKnown RBP10.49□□□□□ -0.73
COL6A3-204ENST00000392003 STAT1P42224 750 aa10.49□□□□□ -0.73
COL6A3-204ENST00000392003 CASP4P49662 377 aa10.49□□□□□ -0.73
COL6A3-204ENST00000392003 CCNHP51946 323 aaPredicted RBP10.49□□□□□ -0.73
COL6A3-204ENST00000392003 ALKBH5Q6P6C2 394 aaKnown RBP10.49□□□□□ -0.73
COL6A3-204ENST00000392003 C1orf186Q6ZWK4 172 aa10.49□□□□□ -0.73
COL6A3-204ENST00000392003 HPCAL4Q9UM19 191 aa10.49□□□□□ -0.73
COL6A3-204ENST00000392003 UBE4BO95155 1302 aa10.49□□□□□ -0.73
COL6A3-204ENST00000392003 IPO5O00410 1097 aaKnown RBP10.49□□□□□ -0.73
COL6A3-204ENST00000392003 PLA2G6O60733 806 aa10.49□□□□□ -0.73
COL6A3-204ENST00000392003 ALAS1P13196 640 aa10.49□□□□□ -0.73
COL6A3-204ENST00000392003 PTK2Q05397 1052 aa10.49□□□□□ -0.73
COL6A3-204ENST00000392003 MIER3Q7Z3K6 550 aa10.49□□□□□ -0.73
COL6A3-204ENST00000392003 SUGP1Q8IWZ8 645 aaKnown RBP10.49□□□□□ -0.73
COL6A3-204ENST00000392003 IFT20Q8IY31 132 aa10.49□□□□□ -0.73
COL6A3-204ENST00000392003 NEK9Q8TD19 979 aa10.49□□□□□ -0.73
COL6A3-204ENST00000392003 MIEF2Q96C03 454 aa10.49□□□□□ -0.73
COL6A3-204ENST00000392003 FAM210AQ96ND0 272 aa10.49□□□□□ -0.73
COL6A3-204ENST00000392003 MKNK1Q9BUB5 465 aa10.49□□□□□ -0.73
COL6A3-204ENST00000392003 STIM2Q9P246 746 aa10.49□□□□□ -0.73
COL6A3-204ENST00000392003 GTPBP10A4D1E9 387 aaKnown RBP10.49□□□□□ -0.73
COL6A3-204ENST00000392003 GRID2IPA4D2P6 1211 aa10.49□□□□□ -0.73
COL6A3-204ENST00000392003 DDX39AO00148 427 aaKnown RBP10.49□□□□□ -0.73
COL6A3-204ENST00000392003 H2AFZP0C0S5 128 aa10.49□□□□□ -0.73
COL6A3-204ENST00000392003 KRT13P13646 458 aa10.49□□□□□ -0.73
COL6A3-204ENST00000392003 HOXD13P35453 343 aa10.49□□□□□ -0.73
COL6A3-204ENST00000392003 CYP2J2P51589 502 aa10.49□□□□□ -0.73
COL6A3-204ENST00000392003 EPHB4P54760 987 aa10.49□□□□□ -0.73
COL6A3-204ENST00000392003 TNNC1P63316 161 aa10.49□□□□□ -0.73
COL6A3-204ENST00000392003 PRKG1Q13976 671 aa10.49□□□□□ -0.73
COL6A3-204ENST00000392003 H2AFVQ71UI9 128 aa10.49□□□□□ -0.73
COL6A3-204ENST00000392003 GSPT2Q8IYD1 628 aaKnown RBP10.49□□□□□ -0.73
COL6A3-204ENST00000392003 SLC35C1Q96A29 364 aa10.49□□□□□ -0.73
COL6A3-204ENST00000392003 PKD2L1Q9P0L9 805 aa10.49□□□□□ -0.73
COL6A3-204ENST00000392003 RNF40O75150 1001 aa10.48□□□□□ -0.73
COL6A3-204ENST00000392003 RPS12P25398 132 aaKnown RBP10.48□□□□□ -0.73
COL6A3-204ENST00000392003 SLC7A5Q01650 507 aa10.48□□□□□ -0.73
COL6A3-204ENST00000392003 ZC2HC1CQ53FD0 456 aaPredicted RBP10.48□□□□□ -0.73
COL6A3-204ENST00000392003 KIAA1755Q5JYT7 1200 aa10.48□□□□□ -0.73
COL6A3-204ENST00000392003 DCAF15Q66K64 600 aa10.48□□□□□ -0.73
COL6A3-204ENST00000392003 SLC30A10Q6XR72 485 aa10.48□□□□□ -0.73
COL6A3-204ENST00000392003 AFAP1L1Q8TED9 768 aa10.48□□□□□ -0.73
Retrieved 100 of 20,778 RNA–protein pairs in 39.7 ms