RNA–Protein interactions for RNA: ENST00000378825.4

CCDC3-201, Transcript of coiled-coil domain containing 3, humanhuman

APPRIS P3 TSL 1 (best) BASIC

Gene CCDC3, Length 2,731 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC3-201ENST00000378825 ATXN2LQ8WWM7 1075 aaKnown RBP20.04■□□□□ 0.8
CCDC3-201ENST00000378825 ELAC2Q9BQ52 826 aaKnown RBP20.04■□□□□ 0.8
CCDC3-201ENST00000378825 MXD3Q9BW11 206 aa20.04■□□□□ 0.8
CCDC3-201ENST00000378825 GPR75-ASB3A0A0A6YYF3 556 aa20.04■□□□□ 0.8
CCDC3-201ENST00000378825 FOXO6A8MYZ6 492 aa20.04■□□□□ 0.8
CCDC3-201ENST00000378825 C21orf2O43822 256 aa20.04■□□□□ 0.8
CCDC3-201ENST00000378825 GTF2IP78347 998 aa20.04■□□□□ 0.8
CCDC3-201ENST00000378825 SLC29A2Q14542 456 aa20.04■□□□□ 0.8
CCDC3-201ENST00000378825 KNOP1Q1ED39 458 aaKnown RBP20.04■□□□□ 0.8
CCDC3-201ENST00000378825 EDRF1Q3B7T1 1238 aa20.04■□□□□ 0.8
CCDC3-201ENST00000378825 HYIQ5T013 277 aa20.04■□□□□ 0.8
CCDC3-201ENST00000378825 C10orf76Q5T2E6 689 aa20.04■□□□□ 0.8
CCDC3-201ENST00000378825 EPS8L3Q8TE67 593 aaKnown RBP20.04■□□□□ 0.8
CCDC3-201ENST00000378825 C18orf8Q96DM3 657 aa20.04■□□□□ 0.8
CCDC3-201ENST00000378825 PRMT1Q99873 361 aaKnown RBP20.04■□□□□ 0.8
CCDC3-201ENST00000378825 SEMA4AQ9H3S1 761 aa20.04■□□□□ 0.8
CCDC3-201ENST00000378825 PSTPIP2Q9H939 334 aa20.04■□□□□ 0.8
CCDC3-201ENST00000378825 ZNF287Q9HBT7 754 aa20.04■□□□□ 0.8
CCDC3-201ENST00000378825 AMFRQ9UKV5 643 aa20.04■□□□□ 0.8
CCDC3-201ENST00000378825 L3MBTL1Q9Y468 752 aa20.04■□□□□ 0.8
CCDC3-201ENST00000378825 CEP83Q9Y592 693 aa20.04■□□□□ 0.8
CCDC3-201ENST00000378825 ASTN1O14525 1302 aa20.03■□□□□ 0.8
CCDC3-201ENST00000378825 CCT8L1PA6NM43 557 aa20.03■□□□□ 0.8
CCDC3-201ENST00000378825 MARCKSL1P49006 195 aa20.03■□□□□ 0.8
CCDC3-201ENST00000378825 SNAP25P60880 206 aa20.03■□□□□ 0.8
CCDC3-201ENST00000378825 DR1Q01658 176 aa20.03■□□□□ 0.8
CCDC3-201ENST00000378825 ZDHHC24Q6UX98 284 aa20.03■□□□□ 0.8
CCDC3-201ENST00000378825 NT5C3AQ9H0P0 336 aa20.03■□□□□ 0.8
CCDC3-201ENST00000378825 AGAP1Q9UPQ3 857 aa20.03■□□□□ 0.8
CCDC3-201ENST00000378825 MGRN1O60291 552 aa20.03■□□□□ 0.8
CCDC3-201ENST00000378825 CLTAP09496 248 aa20.03■□□□□ 0.8
CCDC3-201ENST00000378825 SMARCA1P28370 1054 aa20.03■□□□□ 0.8
CCDC3-201ENST00000378825 KLRC3Q07444 240 aa20.03■□□□□ 0.8
CCDC3-201ENST00000378825 SHROOM1Q2M3G4 852 aaPredicted RBP20.03■□□□□ 0.8
CCDC3-201ENST00000378825 DUPD1Q68J44 220 aa20.03■□□□□ 0.8
CCDC3-201ENST00000378825 TBC1D1Q86TI0 1168 aaPredicted RBP20.03■□□□□ 0.8
CCDC3-201ENST00000378825 ZDHHC14Q8IZN3 488 aa20.03■□□□□ 0.8
CCDC3-201ENST00000378825 CCDC197Q8NCU1 140 aa20.03■□□□□ 0.8
CCDC3-201ENST00000378825 C3orf20Q8ND61 904 aa20.03■□□□□ 0.8
CCDC3-201ENST00000378825 CUL5Q93034 780 aa20.03■□□□□ 0.8
CCDC3-201ENST00000378825 FAM114A2Q9NRY5 505 aa20.03■□□□□ 0.8
CCDC3-201ENST00000378825 ABCF3Q9NUQ8 709 aa20.03■□□□□ 0.8
CCDC3-201ENST00000378825 COG5Q9UP83 839 aa20.03■□□□□ 0.8
CCDC3-201ENST00000378825 CD2APQ9Y5K6 639 aa20.03■□□□□ 0.8
CCDC3-201ENST00000378825 PNMA6FA0A0J9YX94 578 aa20.02■□□□□ 0.8
CCDC3-201ENST00000378825 ATP6V1G2O95670 118 aa20.02■□□□□ 0.8
CCDC3-201ENST00000378825 NR3C1P04150 777 aa20.02■□□□□ 0.8
CCDC3-201ENST00000378825 FGFR4P22455 802 aa20.02■□□□□ 0.8
CCDC3-201ENST00000378825 FRMD5Q7Z6J6 570 aa20.02■□□□□ 0.8
CCDC3-201ENST00000378825 PNMA8AQ86V59 439 aaPredicted RBP20.02■□□□□ 0.8
CCDC3-201ENST00000378825 TBC1D16Q8TBP0 767 aa20.02■□□□□ 0.8
CCDC3-201ENST00000378825 STAMBPL1Q96FJ0 436 aa20.02■□□□□ 0.8
CCDC3-201ENST00000378825 VEZTQ9HBM0 779 aa20.02■□□□□ 0.8
CCDC3-201ENST00000378825 NOD2Q9HC29 1040 aa20.02■□□□□ 0.8
CCDC3-201ENST00000378825 SEPT11Q9NVA2 429 aaKnown RBP20.02■□□□□ 0.8
CCDC3-201ENST00000378825 BZW2Q9Y6E2 419 aaKnown RBP20.02■□□□□ 0.8
CCDC3-201ENST00000378825 COG2Q14746 738 aa20.02■□□□□ 0.79
CCDC3-201ENST00000378825 MSL1Q68DK7 614 aa20.02■□□□□ 0.79
CCDC3-201ENST00000378825 ERP44Q9BS26 406 aa20.02■□□□□ 0.79
CCDC3-201ENST00000378825 CCDC113Q9H0I3 377 aa20.02■□□□□ 0.79
CCDC3-201ENST00000378825 KRT13P13646 458 aa20.01■□□□□ 0.79
CCDC3-201ENST00000378825 PMS2P54278 862 aa20.01■□□□□ 0.79
CCDC3-201ENST00000378825 PTENP60484 403 aa20.01■□□□□ 0.79
CCDC3-201ENST00000378825 ZNF543Q08ER8 600 aa20.01■□□□□ 0.79
CCDC3-201ENST00000378825 CPNE8Q86YQ8 564 aa20.01■□□□□ 0.79
CCDC3-201ENST00000378825 THAP2Q9H0W7 228 aa20.01■□□□□ 0.79
CCDC3-201ENST00000378825 DBR1Q9UK59 544 aaKnown RBP20.01■□□□□ 0.79
CCDC3-201ENST00000378825 TRAF3IP3Q9Y228 551 aa20.01■□□□□ 0.79
CCDC3-201ENST00000378825 DAAM1Q9Y4D1 1078 aa20.01■□□□□ 0.79
CCDC3-201ENST00000378825 RPTORQ8N122 1335 aa20.01■□□□□ 0.79
CCDC3-201ENST00000378825 KDM3AQ9Y4C1 1321 aa20.01■□□□□ 0.79
CCDC3-201ENST00000378825 LRRN2O75325 713 aa20.01■□□□□ 0.79
CCDC3-201ENST00000378825 ATP2B4P23634 1241 aa20.01■□□□□ 0.79
CCDC3-201ENST00000378825 LRRC14Q15048 493 aa20.01■□□□□ 0.79
CCDC3-201ENST00000378825 JAMLQ86YT9 394 aa20.01■□□□□ 0.79
CCDC3-201ENST00000378825 KRT35Q92764 455 aa20.01■□□□□ 0.79
CCDC3-201ENST00000378825 MIEF2Q96C03 454 aa20.01■□□□□ 0.79
CCDC3-201ENST00000378825 KDM4CQ9H3R0 1056 aa20.01■□□□□ 0.79
CCDC3-201ENST00000378825 IL1R1P14778 569 aa20■□□□□ 0.79
CCDC3-201ENST00000378825 PAX7P23759 505 aa20■□□□□ 0.79
CCDC3-201ENST00000378825 CDC25CP30307 473 aa20■□□□□ 0.79
CCDC3-201ENST00000378825 NOVP48745 357 aa20■□□□□ 0.79
CCDC3-201ENST00000378825 PLS1Q14651 629 aa20■□□□□ 0.79
CCDC3-201ENST00000378825 ASPRV1Q53RT3 343 aa20■□□□□ 0.79
CCDC3-201ENST00000378825 PRR16Q569H4 304 aa20■□□□□ 0.79
CCDC3-201ENST00000378825 SLC30A5Q8TAD4 765 aa20■□□□□ 0.79
CCDC3-201ENST00000378825 RUSC1Q9BVN2 902 aa20■□□□□ 0.79
CCDC3-201ENST00000378825 MLXIPLQ9NP71 852 aa20■□□□□ 0.79
CCDC3-201ENST00000378825 ANKRD63C9JTQ0 380 aa20■□□□□ 0.79
CCDC3-201ENST00000378825 HGSO14964 777 aaPredicted RBP20■□□□□ 0.79
CCDC3-201ENST00000378825 SKAP2O75563 359 aaPredicted RBP20■□□□□ 0.79
CCDC3-201ENST00000378825 DNAJC8O75937 253 aaPredicted RBP20■□□□□ 0.79
CCDC3-201ENST00000378825 GCNT3O95395 438 aa20■□□□□ 0.79
CCDC3-201ENST00000378825 VIMP08670 466 aaKnown RBP20■□□□□ 0.79
CCDC3-201ENST00000378825 SPATA31C1P0DKV0 1188 aa20■□□□□ 0.79
CCDC3-201ENST00000378825 SNHG28P0DPA3 235 aa20■□□□□ 0.79
CCDC3-201ENST00000378825 CREB1P16220 341 aa20■□□□□ 0.79
CCDC3-201ENST00000378825 CRY2Q49AN0 593 aa20■□□□□ 0.79
CCDC3-201ENST00000378825 ZC2HC1CQ53FD0 456 aaPredicted RBP20■□□□□ 0.79
CCDC3-201ENST00000378825 MEX3CQ5U5Q3 659 aaKnown RBP20■□□□□ 0.79
Retrieved 100 of 20,778 RNA–protein pairs in 45.9 ms