RNA–Protein interactions for RNA: ENST00000375405.7

SCN1A-202, Transcript of sodium voltage-gated channel alpha subunit 1, humanhuman

APPRIS P3 TSL 5 BASIC

Gene SCN1A, Length 8,097 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCN1A-202ENST00000375405 ARHGAP9Q9BRR9 750 aa4.94□□□□□ -1.62
SCN1A-202ENST00000375405 NOC4LQ9BVI4 516 aaKnown RBP4.94□□□□□ -1.62
SCN1A-202ENST00000375405 GPBP1L1Q9HC44 474 aaPredicted RBP4.94□□□□□ -1.62
SCN1A-202ENST00000375405 BABAM1Q9NWV8 329 aa4.94□□□□□ -1.62
SCN1A-202ENST00000375405 ERAP1Q9NZ08 941 aa4.94□□□□□ -1.62
SCN1A-202ENST00000375405 MAPK8IP1Q9UQF2 711 aa4.94□□□□□ -1.62
SCN1A-202ENST00000375405 PLCG2P16885 1265 aa4.94□□□□□ -1.62
SCN1A-202ENST00000375405 S100GP29377 79 aa4.94□□□□□ -1.62
SCN1A-202ENST00000375405 HNMTP50135 292 aa4.94□□□□□ -1.62
SCN1A-202ENST00000375405 CYP2J2P51589 502 aa4.94□□□□□ -1.62
SCN1A-202ENST00000375405 CCNIQ14094 377 aa4.94□□□□□ -1.62
SCN1A-202ENST00000375405 EFTUD2Q15029 972 aaKnown RBP eCLIP4.94□□□□□ -1.62
SCN1A-202ENST00000375405 CFAP221Q4G0U5 840 aa4.94□□□□□ -1.62
SCN1A-202ENST00000375405 CENPPQ6IPU0 288 aa4.94□□□□□ -1.62
SCN1A-202ENST00000375405 LRRC8EQ6NSJ5 796 aa4.94□□□□□ -1.62
SCN1A-202ENST00000375405 ANKLE2Q86XL3 938 aa4.94□□□□□ -1.62
SCN1A-202ENST00000375405 THEM5Q8N1Q8 247 aa4.94□□□□□ -1.62
SCN1A-202ENST00000375405 SPATA16Q9BXB7 569 aa4.94□□□□□ -1.62
SCN1A-202ENST00000375405 TBC1D10AQ9BXI6 508 aa4.94□□□□□ -1.62
SCN1A-202ENST00000375405 OLFML3Q9NRN5 406 aa4.94□□□□□ -1.62
SCN1A-202ENST00000375405 SAE1Q9UBE0 346 aaPredicted RBP4.94□□□□□ -1.62
SCN1A-202ENST00000375405 TMCO1Q9UM00 188 aa4.94□□□□□ -1.62
SCN1A-202ENST00000375405 L1RE1Q9UN81 338 aa4.94□□□□□ -1.62
SCN1A-202ENST00000375405 CTNND2Q9UQB3 1225 aa4.94□□□□□ -1.62
SCN1A-202ENST00000375405 PAXBP1Q9Y5B6 917 aa4.94□□□□□ -1.62
SCN1A-202ENST00000375405 POTECB2RU33 542 aa4.94□□□□□ -1.62
SCN1A-202ENST00000375405 TNNI3P19429 210 aa4.94□□□□□ -1.62
SCN1A-202ENST00000375405 CDC27P30260 824 aa4.94□□□□□ -1.62
SCN1A-202ENST00000375405 STARP49675 285 aa4.94□□□□□ -1.62
SCN1A-202ENST00000375405 CACNB1Q02641 598 aaPredicted RBP4.94□□□□□ -1.62
SCN1A-202ENST00000375405 MAMLD1Q13495 774 aa4.94□□□□□ -1.62
SCN1A-202ENST00000375405 BTBD8Q5XKL5 378 aa4.94□□□□□ -1.62
SCN1A-202ENST00000375405 RASSF6Q6ZTQ3 369 aa4.94□□□□□ -1.62
SCN1A-202ENST00000375405 CYLDQ9NQC7 956 aa4.94□□□□□ -1.62
SCN1A-202ENST00000375405 SH3BGRL2Q9UJC5 107 aa4.94□□□□□ -1.62
SCN1A-202ENST00000375405 DSEQ9UL01 958 aa4.94□□□□□ -1.62
SCN1A-202ENST00000375405 CHKBQ9Y259 395 aa4.94□□□□□ -1.62
SCN1A-202ENST00000375405 RIPOR2Q9Y4F9 1068 aa4.94□□□□□ -1.62
SCN1A-202ENST00000375405 KDRP35968 1356 aa4.94□□□□□ -1.62
SCN1A-202ENST00000375405 ZC3H4Q9UPT8 1303 aaKnown RBP4.94□□□□□ -1.62
SCN1A-202ENST00000375405 S100A9P06702 114 aaKnown RBP4.94□□□□□ -1.62
SCN1A-202ENST00000375405 SKILP12757 684 aa4.94□□□□□ -1.62
SCN1A-202ENST00000375405 SLC16A2P36021 539 aa4.94□□□□□ -1.62
SCN1A-202ENST00000375405 CBX5P45973 191 aa4.94□□□□□ -1.62
SCN1A-202ENST00000375405 DYNLT1P63172 113 aa4.94□□□□□ -1.62
SCN1A-202ENST00000375405 TERF2Q15554 542 aa4.94□□□□□ -1.62
SCN1A-202ENST00000375405 LONRF3Q496Y0 759 aa4.94□□□□□ -1.62
SCN1A-202ENST00000375405 PYHIN1Q6K0P9 492 aa4.94□□□□□ -1.62
SCN1A-202ENST00000375405 HMBOX1Q6NT76 420 aa4.94□□□□□ -1.62
SCN1A-202ENST00000375405 PACS1Q6VY07 963 aa4.94□□□□□ -1.62
SCN1A-202ENST00000375405 EPYCQ99645 322 aa4.94□□□□□ -1.62
SCN1A-202ENST00000375405 CARD14Q9BXL6 1004 aa4.94□□□□□ -1.62
SCN1A-202ENST00000375405 BCL2L12Q9HB09 334 aa4.94□□□□□ -1.62
SCN1A-202ENST00000375405 KLHL1Q9NR64 748 aa4.94□□□□□ -1.62
SCN1A-202ENST00000375405 SNX13Q9Y5W8 968 aa4.94□□□□□ -1.62
SCN1A-202ENST00000375405 LINC00854A0A1B0GVQ3 168 aa4.94□□□□□ -1.62
SCN1A-202ENST00000375405 TARSL2A2RTX5 802 aaKnown RBP4.94□□□□□ -1.62
SCN1A-202ENST00000375405 SEMA3EO15041 775 aa4.94□□□□□ -1.62
SCN1A-202ENST00000375405 TTI1O43156 1089 aa4.94□□□□□ -1.62
SCN1A-202ENST00000375405 CEP104O60308 925 aa4.94□□□□□ -1.62
SCN1A-202ENST00000375405 TLR2O60603 784 aa4.94□□□□□ -1.62
SCN1A-202ENST00000375405 BPNT1O95861 308 aa4.94□□□□□ -1.62
SCN1A-202ENST00000375405 MPOP05164 745 aa4.94□□□□□ -1.62
SCN1A-202ENST00000375405 RPSAP08865 295 aaKnown RBP4.94□□□□□ -1.62
SCN1A-202ENST00000375405 COPAP53621 1224 aa4.94□□□□□ -1.62
SCN1A-202ENST00000375405 BMP2KLQ5H9B9 411 aa4.94□□□□□ -1.62
SCN1A-202ENST00000375405 TREML1Q86YW5 311 aa4.94□□□□□ -1.62
SCN1A-202ENST00000375405 KIAA0825Q8IV33 1275 aa4.94□□□□□ -1.62
SCN1A-202ENST00000375405 BBS7Q8IWZ6 715 aa4.94□□□□□ -1.62
SCN1A-202ENST00000375405 RIN3Q8TB24 985 aa4.94□□□□□ -1.62
SCN1A-202ENST00000375405 CPT1CQ8TCG5 803 aa4.94□□□□□ -1.62
SCN1A-202ENST00000375405 PRAM1Q96QH2 718 aa4.94□□□□□ -1.62
SCN1A-202ENST00000375405 AS3MTQ9HBK9 375 aa4.94□□□□□ -1.62
SCN1A-202ENST00000375405 TAB2Q9NYJ8 693 aa4.94□□□□□ -1.62
SCN1A-202ENST00000375405 RGS16O15492 202 aaPredicted RBP4.93□□□□□ -1.62
SCN1A-202ENST00000375405 TOM1O60784 492 aa4.93□□□□□ -1.62
SCN1A-202ENST00000375405 SUPT3HO75486 399 aa4.93□□□□□ -1.62
SCN1A-202ENST00000375405 CLTAP09496 248 aa4.93□□□□□ -1.62
SCN1A-202ENST00000375405 LSP1P33241 339 aa4.93□□□□□ -1.62
SCN1A-202ENST00000375405 SCNN1AP37088 669 aa4.93□□□□□ -1.62
SCN1A-202ENST00000375405 SRSF11Q05519 484 aaKnown RBP4.93□□□□□ -1.62
SCN1A-202ENST00000375405 CACNB2Q08289 660 aaPredicted RBP4.93□□□□□ -1.62
SCN1A-202ENST00000375405 KLHL12Q53G59 568 aa4.93□□□□□ -1.62
SCN1A-202ENST00000375405 CCDC81Q6ZN84 652 aa4.93□□□□□ -1.62
SCN1A-202ENST00000375405 TBC1D9Q6ZT07 1266 aa4.93□□□□□ -1.62
SCN1A-202ENST00000375405 RAET1EQ8TD07 263 aa4.93□□□□□ -1.62
SCN1A-202ENST00000375405 TTC17Q96AE7 1141 aa4.93□□□□□ -1.62
SCN1A-202ENST00000375405 REXO5Q96IC2 774 aaKnown RBP4.93□□□□□ -1.62
SCN1A-202ENST00000375405 BTBD9Q96Q07 612 aa4.93□□□□□ -1.62
SCN1A-202ENST00000375405 SH3GL1Q99961 368 aa4.93□□□□□ -1.62
SCN1A-202ENST00000375405 CCDC3Q9BQI4 270 aa4.93□□□□□ -1.62
SCN1A-202ENST00000375405 SLC12A5Q9H2X9 1139 aa4.93□□□□□ -1.62
SCN1A-202ENST00000375405 GTSE1Q9NYZ3 720 aa4.93□□□□□ -1.62
SCN1A-202ENST00000375405 VPS54Q9P1Q0 977 aa4.93□□□□□ -1.62
SCN1A-202ENST00000375405 KLHL14Q9P2G3 628 aa4.93□□□□□ -1.62
SCN1A-202ENST00000375405 PCDHA5Q9Y5H7 936 aa4.93□□□□□ -1.62
SCN1A-202ENST00000375405 DYNC1LI2O43237 492 aaPredicted RBP4.93□□□□□ -1.62
SCN1A-202ENST00000375405 IGHDP01880 384 aa4.93□□□□□ -1.62
SCN1A-202ENST00000375405 BRAFP15056 766 aa4.93□□□□□ -1.62
SCN1A-202ENST00000375405 INPP5BP32019 993 aa4.93□□□□□ -1.62
Retrieved 100 of 20,778 RNA–protein pairs in 13.6 ms