RNA–Protein interactions for RNA: ENST00000374876.4

CCDC40-202, Transcript of coiled-coil domain containing 40, humanhuman

TSL 1 (best) BASIC

Gene CCDC40, Length 2,010 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC40-202ENST00000374876 FKBP3Q00688 224 aaKnown RBP17.08■□□□□ 0.33
CCDC40-202ENST00000374876 PGM5Q15124 567 aa17.08■□□□□ 0.33
CCDC40-202ENST00000374876 PDCD2LQ9BRP1 358 aa17.08■□□□□ 0.33
CCDC40-202ENST00000374876 MMRN2Q9H8L6 949 aa17.08■□□□□ 0.33
CCDC40-202ENST00000374876 PAK6Q9NQU5 681 aaPredicted RBP17.08■□□□□ 0.33
CCDC40-202ENST00000374876 MYO6Q9UM54 1294 aa17.08■□□□□ 0.33
CCDC40-202ENST00000374876 SIK3Q9Y2K2 1263 aa17.08■□□□□ 0.33
CCDC40-202ENST00000374876 POTEFA5A3E0 1075 aa17.08■□□□□ 0.32
CCDC40-202ENST00000374876 SEC31AO94979 1220 aaKnown RBP17.08■□□□□ 0.32
CCDC40-202ENST00000374876 SOX10P56693 466 aa17.08■□□□□ 0.32
CCDC40-202ENST00000374876 TMEM63BQ5T3F8 832 aa17.08■□□□□ 0.32
CCDC40-202ENST00000374876 CC2D1AQ6P1N0 951 aaPredicted RBP17.08■□□□□ 0.32
CCDC40-202ENST00000374876 ERMNQ8TAM6 284 aa17.08■□□□□ 0.32
CCDC40-202ENST00000374876 CRYGNQ8WXF5 182 aa17.08■□□□□ 0.32
CCDC40-202ENST00000374876 CCDC42Q96M95 316 aa17.08■□□□□ 0.32
CCDC40-202ENST00000374876 ARFGAP3Q9NP61 516 aa17.08■□□□□ 0.32
CCDC40-202ENST00000374876 TBC1D7Q9P0N9 293 aa17.08■□□□□ 0.32
CCDC40-202ENST00000374876 CTAGE15A4D2H0 777 aa17.07■□□□□ 0.32
CCDC40-202ENST00000374876 TBX3O15119 743 aa17.07■□□□□ 0.32
CCDC40-202ENST00000374876 ATP8B1O43520 1251 aa17.07■□□□□ 0.32
CCDC40-202ENST00000374876 MED24O75448 989 aa17.07■□□□□ 0.32
CCDC40-202ENST00000374876 KIF20AO95235 890 aa17.07■□□□□ 0.32
CCDC40-202ENST00000374876 CTAGE8P0CG41 777 aa17.07■□□□□ 0.32
CCDC40-202ENST00000374876 GABPB1Q06547 395 aaPredicted RBP17.07■□□□□ 0.32
CCDC40-202ENST00000374876 DMTNQ08495 405 aa17.07■□□□□ 0.32
CCDC40-202ENST00000374876 SPA17Q15506 151 aa17.07■□□□□ 0.32
CCDC40-202ENST00000374876 Q4G0T1 1027 aa17.07■□□□□ 0.32
CCDC40-202ENST00000374876 ZCWPW2Q504Y3 356 aa17.07■□□□□ 0.32
CCDC40-202ENST00000374876 HERC4Q5GLZ8 1057 aaPredicted RBP17.07■□□□□ 0.32
CCDC40-202ENST00000374876 TAPT1Q6NXT6 567 aa17.07■□□□□ 0.32
CCDC40-202ENST00000374876 CTAGE6Q86UF2 777 aa17.07■□□□□ 0.32
CCDC40-202ENST00000374876 CTAGE4Q8IX94 777 aa17.07■□□□□ 0.32
CCDC40-202ENST00000374876 ETNPPLQ8TBG4 499 aa17.07■□□□□ 0.32
CCDC40-202ENST00000374876 LENG1Q96BZ8 264 aaPredicted RBP17.07■□□□□ 0.32
CCDC40-202ENST00000374876 IWS1Q96ST2 819 aa17.07■□□□□ 0.32
CCDC40-202ENST00000374876 TFR2Q9UP52 801 aa17.07■□□□□ 0.32
CCDC40-202ENST00000374876 PLAGL2Q9UPG8 496 aa17.07■□□□□ 0.32
CCDC40-202ENST00000374876 COL4A3BPQ9Y5P4 624 aa17.07■□□□□ 0.32
CCDC40-202ENST00000374876 C11orf97A0A1B0GVM6 126 aaPredicted RBP17.06■□□□□ 0.32
CCDC40-202ENST00000374876 SEPT4O43236 478 aa17.06■□□□□ 0.32
CCDC40-202ENST00000374876 ADCY6O43306 1168 aa17.06■□□□□ 0.32
CCDC40-202ENST00000374876 HNRNPH3P31942 346 aaKnown RBP17.06■□□□□ 0.32
CCDC40-202ENST00000374876 SREBF1P36956 1147 aa17.06■□□□□ 0.32
CCDC40-202ENST00000374876 ADCYAP1R1P41586 468 aa17.06■□□□□ 0.32
CCDC40-202ENST00000374876 AMPD2Q01433 879 aa17.06■□□□□ 0.32
CCDC40-202ENST00000374876 STXBP2Q15833 593 aa17.06■□□□□ 0.32
CCDC40-202ENST00000374876 CCDC40Q4G0X9 1142 aa17.06■□□□□ 0.32
CCDC40-202ENST00000374876 LHX8Q68G74 356 aa17.06■□□□□ 0.32
CCDC40-202ENST00000374876 U2AF1L4Q8WU68 220 aaKnown RBP17.06■□□□□ 0.32
CCDC40-202ENST00000374876 MPHOSPH6Q99547 160 aaKnown RBP17.06■□□□□ 0.32
CCDC40-202ENST00000374876 ZMYND15Q9H091 742 aa17.06■□□□□ 0.32
CCDC40-202ENST00000374876 NPHP3-ACAD11A0A0J9YXS1 232 aa17.06■□□□□ 0.32
CCDC40-202ENST00000374876 CAPN15O75808 1086 aa17.06■□□□□ 0.32
CCDC40-202ENST00000374876 GJB1P08034 283 aa17.06■□□□□ 0.32
CCDC40-202ENST00000374876 CYP11B2P19099 503 aa17.06■□□□□ 0.32
CCDC40-202ENST00000374876 CACNB1Q02641 598 aaPredicted RBP17.06■□□□□ 0.32
CCDC40-202ENST00000374876 NCAPH2Q6IBW4 605 aa17.06■□□□□ 0.32
CCDC40-202ENST00000374876 POTEGQ6S5H5 508 aa17.06■□□□□ 0.32
CCDC40-202ENST00000374876 SEPT14Q6ZU15 432 aa17.06■□□□□ 0.32
CCDC40-202ENST00000374876 VSIG10LQ86VR7 867 aa17.06■□□□□ 0.32
CCDC40-202ENST00000374876 DDX20Q9UHI6 824 aaKnown RBP17.06■□□□□ 0.32
CCDC40-202ENST00000374876 LOC102724159A0A0B4J2E5 919 aa17.05■□□□□ 0.32
CCDC40-202ENST00000374876 EPHB6O15197 1021 aa17.05■□□□□ 0.32
CCDC40-202ENST00000374876 SGPL1O95470 568 aa17.05■□□□□ 0.32
CCDC40-202ENST00000374876 EN2P19622 333 aaPredicted RBP17.05■□□□□ 0.32
CCDC40-202ENST00000374876 SLC12A3P55017 1021 aa17.05■□□□□ 0.32
CCDC40-202ENST00000374876 SPIRE1Q08AE8 756 aa17.05■□□□□ 0.32
CCDC40-202ENST00000374876 RAD51AP2Q09MP3 1159 aa17.05■□□□□ 0.32
CCDC40-202ENST00000374876 KIF5AQ12840 1032 aa17.05■□□□□ 0.32
CCDC40-202ENST00000374876 BRD3Q15059 726 aa17.05■□□□□ 0.32
CCDC40-202ENST00000374876 PWP2Q15269 919 aaKnown RBP17.05■□□□□ 0.32
CCDC40-202ENST00000374876 CATSPER3Q86XQ3 398 aa17.05■□□□□ 0.32
CCDC40-202ENST00000374876 NEK11Q8NG66 645 aa17.05■□□□□ 0.32
CCDC40-202ENST00000374876 FAM20AQ96MK3 541 aa17.05■□□□□ 0.32
CCDC40-202ENST00000374876 CEP63Q96MT8 703 aa17.05■□□□□ 0.32
CCDC40-202ENST00000374876 TSGA10Q9BZW7 698 aa17.05■□□□□ 0.32
CCDC40-202ENST00000374876 ZHX3Q9H4I2 956 aa17.05■□□□□ 0.32
CCDC40-202ENST00000374876 FAM184BQ9ULE4 1060 aa17.05■□□□□ 0.32
CCDC40-202ENST00000374876 PCDHA2Q9Y5H9 948 aa17.05■□□□□ 0.32
CCDC40-202ENST00000374876 STK24Q9Y6E0 443 aa17.05■□□□□ 0.32
CCDC40-202ENST00000374876 CCDC151A5D8V7 595 aa17.04■□□□□ 0.32
CCDC40-202ENST00000374876 GNA14O95837 355 aa17.04■□□□□ 0.32
CCDC40-202ENST00000374876 TFRCP02786 760 aaKnown RBP17.04■□□□□ 0.32
CCDC40-202ENST00000374876 MRPS9P82933 396 aaKnown RBP17.04■□□□□ 0.32
CCDC40-202ENST00000374876 CYP27A1Q02318 531 aa17.04■□□□□ 0.32
CCDC40-202ENST00000374876 GJC2Q5T442 439 aaPredicted RBP17.04■□□□□ 0.32
CCDC40-202ENST00000374876 UTP14CQ5TAP6 766 aaKnown RBP17.04■□□□□ 0.32
CCDC40-202ENST00000374876 RRAGAQ7L523 313 aa17.04■□□□□ 0.32
CCDC40-202ENST00000374876 NELFCDQ8IXH7 590 aa17.04■□□□□ 0.32
CCDC40-202ENST00000374876 FGFBP2Q9BYJ0 223 aa17.04■□□□□ 0.32
CCDC40-202ENST00000374876 LACRTQ9GZZ8 138 aa17.04■□□□□ 0.32
CCDC40-202ENST00000374876 DEF6Q9H4E7 631 aa17.04■□□□□ 0.32
CCDC40-202ENST00000374876 VTA1Q9NP79 307 aa17.04■□□□□ 0.32
CCDC40-202ENST00000374876 DNM3Q9UQ16 869 aa17.04■□□□□ 0.32
CCDC40-202ENST00000374876 RCCD1A6NED2 376 aa17.04■□□□□ 0.32
CCDC40-202ENST00000374876 FAM86B1E9PN63 330 aa17.04■□□□□ 0.32
CCDC40-202ENST00000374876 ENC1O14682 589 aa17.04■□□□□ 0.32
CCDC40-202ENST00000374876 EIF3JO75822 258 aaKnown RBP17.04■□□□□ 0.32
CCDC40-202ENST00000374876 RGS20O76081 388 aa17.04■□□□□ 0.32
CCDC40-202ENST00000374876 FAM86B2P0C5J1 330 aa17.04■□□□□ 0.32
Retrieved 100 of 20,778 RNA–protein pairs in 35.2 ms