RNA–Protein interactions for RNA: ENST00000359947.8

PTPRF-201, Transcript of protein tyrosine phosphatase, receptor type F, humanhuman

TSL 1 (best) BASIC

Gene PTPRF, Length 7,727 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTPRF-201ENST00000359947 MGEA5O60502 916 aa16.69■□□□□ 0.26
PTPRF-201ENST00000359947 CAPS2Q9BXY5 557 aa16.69■□□□□ 0.26
PTPRF-201ENST00000359947 DYRK4Q9NR20 520 aa16.69■□□□□ 0.26
PTPRF-201ENST00000359947 SFMBT1Q9UHJ3 866 aa16.69■□□□□ 0.26
PTPRF-201ENST00000359947 UBE4BO95155 1302 aa16.69■□□□□ 0.26
PTPRF-201ENST00000359947 F8W8V4 182 aa16.69■□□□□ 0.26
PTPRF-201ENST00000359947 CELF2O95319 508 aaKnown RBP16.69■□□□□ 0.26
PTPRF-201ENST00000359947 SP8Q8IXZ3 490 aa16.69■□□□□ 0.26
PTPRF-201ENST00000359947 ENAHQ8N8S7 591 aaPredicted RBP16.69■□□□□ 0.26
PTPRF-201ENST00000359947 LXNQ9BS40 222 aa16.69■□□□□ 0.26
PTPRF-201ENST00000359947 ADAMTS1Q9UHI8 967 aa16.69■□□□□ 0.26
PTPRF-201ENST00000359947 A8MXQ7 604 aa16.68■□□□□ 0.26
PTPRF-201ENST00000359947 IGKV5-2P06315 115 aa16.68■□□□□ 0.26
PTPRF-201ENST00000359947 SEC23IPQ9Y6Y8 1000 aaKnown RBP16.68■□□□□ 0.26
PTPRF-201ENST00000359947 HECW2Q9P2P5 1572 aa16.68■□□□□ 0.26
PTPRF-201ENST00000359947 SPECC1L-ADORA2AF8WAN1 911 aa16.68■□□□□ 0.26
PTPRF-201ENST00000359947 CFLARO15519 480 aa16.68■□□□□ 0.26
PTPRF-201ENST00000359947 CLTAP09496 248 aa16.68■□□□□ 0.26
PTPRF-201ENST00000359947 HADHAP40939 763 aa16.68■□□□□ 0.26
PTPRF-201ENST00000359947 AP1B1Q10567 949 aa16.68■□□□□ 0.26
PTPRF-201ENST00000359947 QRICH1Q2TAL8 776 aa16.68■□□□□ 0.26
PTPRF-201ENST00000359947 PYROXD1Q8WU10 500 aa16.68■□□□□ 0.26
PTPRF-201ENST00000359947 CCNE1P24864 410 aa16.68■□□□□ 0.26
PTPRF-201ENST00000359947 QARSP47897 775 aaKnown RBP16.68■□□□□ 0.26
PTPRF-201ENST00000359947 OCRLQ01968 901 aa16.68■□□□□ 0.26
PTPRF-201ENST00000359947 SH3KBP1Q96B97 665 aa16.68■□□□□ 0.26
PTPRF-201ENST00000359947 ZNRF3Q9ULT6 936 aa16.68■□□□□ 0.26
PTPRF-201ENST00000359947 KRT76Q01546 638 aa16.68■□□□□ 0.26
PTPRF-201ENST00000359947 SP110Q9HB58 689 aa16.68■□□□□ 0.26
PTPRF-201ENST00000359947 LIFRP42702 1097 aa16.68■□□□□ 0.26
PTPRF-201ENST00000359947 VEPH1Q14D04 833 aa16.68■□□□□ 0.26
PTPRF-201ENST00000359947 KIF19Q2TAC6 998 aa16.68■□□□□ 0.26
PTPRF-201ENST00000359947 TRIM49BA6NDI0 452 aa16.68■□□□□ 0.26
PTPRF-201ENST00000359947 MYRIPQ8NFW9 859 aa16.68■□□□□ 0.26
PTPRF-201ENST00000359947 SCYL3Q8IZE3 742 aa16.67■□□□□ 0.26
PTPRF-201ENST00000359947 OXER1Q8TDS5 423 aa16.67■□□□□ 0.26
PTPRF-201ENST00000359947 MRPL4Q9BYD3 311 aaKnown RBP16.67■□□□□ 0.26
PTPRF-201ENST00000359947 GGA3Q9NZ52 723 aa16.67■□□□□ 0.26
PTPRF-201ENST00000359947 EXOC1LA0A1B0GW35 172 aa16.67■□□□□ 0.26
PTPRF-201ENST00000359947 DFFAO00273 331 aa16.67■□□□□ 0.26
PTPRF-201ENST00000359947 TADA2AO75478 443 aa16.67■□□□□ 0.26
PTPRF-201ENST00000359947 PAMP19021 973 aa16.67■□□□□ 0.26
PTPRF-201ENST00000359947 LMBRD2Q68DH5 695 aaPredicted RBP16.67■□□□□ 0.26
PTPRF-201ENST00000359947 THAP9Q9H5L6 903 aa16.67■□□□□ 0.26
PTPRF-201ENST00000359947 SNX2O60749 519 aa16.67■□□□□ 0.26
PTPRF-201ENST00000359947 AKR1B1P15121 316 aa16.67■□□□□ 0.26
PTPRF-201ENST00000359947 HUNKP57058 714 aa16.67■□□□□ 0.26
PTPRF-201ENST00000359947 PHEXP78562 749 aa16.67■□□□□ 0.26
PTPRF-201ENST00000359947 ZFYVE28Q9HCC9 887 aa16.67■□□□□ 0.26
PTPRF-201ENST00000359947 SH3GLB2Q9NR46 395 aa16.67■□□□□ 0.26
PTPRF-201ENST00000359947 MARCH10Q8NA82 808 aaPredicted RBP16.67■□□□□ 0.26
PTPRF-201ENST00000359947 XXYLT1Q8NBI6 393 aa16.67■□□□□ 0.26
PTPRF-201ENST00000359947 RNF149Q8NC42 400 aa16.67■□□□□ 0.26
PTPRF-201ENST00000359947 MAP3K20Q9NYL2 800 aaKnown RBP16.67■□□□□ 0.26
PTPRF-201ENST00000359947 ACSL3O95573 720 aa16.67■□□□□ 0.26
PTPRF-201ENST00000359947 TFRCP02786 760 aaKnown RBP16.67■□□□□ 0.26
PTPRF-201ENST00000359947 NR3C1P04150 777 aa16.67■□□□□ 0.26
PTPRF-201ENST00000359947 KCNA1Q09470 495 aa16.67■□□□□ 0.26
PTPRF-201ENST00000359947 KRT82Q9NSB4 513 aa16.67■□□□□ 0.26
PTPRF-201ENST00000359947 JRKLQ9Y4A0 524 aa16.67■□□□□ 0.26
PTPRF-201ENST00000359947 CAPN7Q9Y6W3 813 aa16.67■□□□□ 0.26
PTPRF-201ENST00000359947 HMBSP08397 361 aa16.67■□□□□ 0.26
PTPRF-201ENST00000359947 PFKFB3Q16875 520 aaPredicted RBP16.67■□□□□ 0.26
PTPRF-201ENST00000359947 YIPF2Q9BWQ6 316 aa16.67■□□□□ 0.26
PTPRF-201ENST00000359947 ORC6Q9Y5N6 252 aa16.67■□□□□ 0.26
PTPRF-201ENST00000359947 E5RI56 91 aa16.66■□□□□ 0.26
PTPRF-201ENST00000359947 IRF1P10914 325 aa16.66■□□□□ 0.26
PTPRF-201ENST00000359947 UBE2Q2Q8WVN8 375 aa16.66■□□□□ 0.26
PTPRF-201ENST00000359947 GRIN3BO60391 1043 aa16.66■□□□□ 0.26
PTPRF-201ENST00000359947 KDM6BO15054 1643 aa16.66■□□□□ 0.26
PTPRF-201ENST00000359947 ASB14A6NK59 587 aa16.66■□□□□ 0.26
PTPRF-201ENST00000359947 KPNA2P52292 529 aaKnown RBP16.66■□□□□ 0.26
PTPRF-201ENST00000359947 PPP1R2P3Q6NXS1 205 aa16.66■□□□□ 0.26
PTPRF-201ENST00000359947 BZW1Q7L1Q6 419 aaKnown RBP16.66■□□□□ 0.26
PTPRF-201ENST00000359947 LDHDQ86WU2 507 aa16.66■□□□□ 0.26
PTPRF-201ENST00000359947 DHX9Q08211 1270 aaKnown RBP16.66■□□□□ 0.26
PTPRF-201ENST00000359947 SPZ1Q9BXG8 430 aa16.66■□□□□ 0.26
PTPRF-201ENST00000359947 CNOT8Q9UFF9 292 aaKnown RBP16.66■□□□□ 0.26
PTPRF-201ENST00000359947 ZCCHC11Q5TAX3 1644 aaKnown RBP16.66■□□□□ 0.26
PTPRF-201ENST00000359947 CD2BP2O95400 341 aaKnown RBP16.66■□□□□ 0.26
PTPRF-201ENST00000359947 SNAPC2Q13487 334 aa16.66■□□□□ 0.26
PTPRF-201ENST00000359947 MAML1Q92585 1016 aa16.66■□□□□ 0.26
PTPRF-201ENST00000359947 DHX38Q92620 1227 aaKnown RBP16.66■□□□□ 0.26
PTPRF-201ENST00000359947 C11orf70Q9BRQ4 267 aa16.66■□□□□ 0.26
PTPRF-201ENST00000359947 PDE11AQ9HCR9 933 aa16.66■□□□□ 0.26
PTPRF-201ENST00000359947 SLC9A2Q9UBY0 812 aa16.66■□□□□ 0.26
PTPRF-201ENST00000359947 CHEK2O96017 543 aa16.65■□□□□ 0.26
PTPRF-201ENST00000359947 ETF1P62495 437 aaKnown RBP16.65■□□□□ 0.26
PTPRF-201ENST00000359947 TAS2R42Q7RTR8 314 aa16.65■□□□□ 0.26
PTPRF-201ENST00000359947 TJP3O95049 919 aa16.65■□□□□ 0.26
PTPRF-201ENST00000359947 LRRC63Q05C16 580 aa16.65■□□□□ 0.26
PTPRF-201ENST00000359947 ZNF746Q6NUN9 644 aaPredicted RBP16.65■□□□□ 0.26
PTPRF-201ENST00000359947 TOGARAM2Q6ZUX3 1019 aa16.65■□□□□ 0.26
PTPRF-201ENST00000359947 CHD1O14646 1710 aa16.65■□□□□ 0.26
PTPRF-201ENST00000359947 ART3Q13508 389 aa16.65■□□□□ 0.26
PTPRF-201ENST00000359947 PHLDB3Q6NSJ2 640 aa16.65■□□□□ 0.26
PTPRF-201ENST00000359947 PBXIP1Q96AQ6 731 aa16.65■□□□□ 0.26
PTPRF-201ENST00000359947 SLC4A7Q9Y6M7 1214 aa16.65■□□□□ 0.26
PTPRF-201ENST00000359947 DNAJC6O75061 913 aa16.65■□□□□ 0.26
PTPRF-201ENST00000359947 P4HBP07237 508 aaKnown RBP16.65■□□□□ 0.26
Retrieved 100 of 20,778 RNA–protein pairs in 20.7 ms