RNA–Protein interactions for RNA: ENST00000357475.8

SSBP3-202, Transcript of single stranded DNA binding protein 3, humanhuman

TSL 1 (best) BASIC

Gene SSBP3, Length 1,533 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SSBP3-202ENST00000357475 KIAA0319LQ8IZA0 1049 aa28.14■■■□□ 2.1
SSBP3-202ENST00000357475 MCPH1Q8NEM0 835 aa28.14■■■□□ 2.1
SSBP3-202ENST00000357475 ZNF668Q96K58 619 aaPredicted RBP28.14■■■□□ 2.1
SSBP3-202ENST00000357475 FAM49AQ9H0Q0 323 aaPredicted RBP28.14■■■□□ 2.1
SSBP3-202ENST00000357475 ZHX3Q9H4I2 956 aa28.14■■■□□ 2.1
SSBP3-202ENST00000357475 CCDC183Q5T5S1 534 aa28.13■■■□□ 2.09
SSBP3-202ENST00000357475 FAM126BQ8IXS8 530 aa28.13■■■□□ 2.09
SSBP3-202ENST00000357475 RETREG2Q8NC44 543 aa28.13■■■□□ 2.09
SSBP3-202ENST00000357475 DNAJB3Q8WWF6 145 aa28.13■■■□□ 2.09
SSBP3-202ENST00000357475 PPP1R16BQ96T49 567 aa28.13■■■□□ 2.09
SSBP3-202ENST00000357475 LRRC27Q9C0I9 530 aa28.13■■■□□ 2.09
SSBP3-202ENST00000357475 VTNP04004 478 aa28.13■■■□□ 2.09
SSBP3-202ENST00000357475 GLRA2P23416 452 aa28.13■■■□□ 2.09
SSBP3-202ENST00000357475 SKOR2Q2VWA4 1001 aaPredicted RBP28.13■■■□□ 2.09
SSBP3-202ENST00000357475 TRIM60Q495X7 471 aa28.13■■■□□ 2.09
SSBP3-202ENST00000357475 NECAB2Q7Z6G3 386 aa28.13■■■□□ 2.09
SSBP3-202ENST00000357475 SERINC5Q86VE9 423 aa28.13■■■□□ 2.09
SSBP3-202ENST00000357475 PRPF31Q8WWY3 499 aaKnown RBP28.13■■■□□ 2.09
SSBP3-202ENST00000357475 DHX38Q92620 1227 aaKnown RBP28.13■■■□□ 2.09
SSBP3-202ENST00000357475 PANK4Q9NVE7 773 aa28.13■■■□□ 2.09
SSBP3-202ENST00000357475 SUCLA2Q9P2R7 463 aaPredicted RBP28.13■■■□□ 2.09
SSBP3-202ENST00000357475 ALPK3Q96L96 1907 aa28.12■■■□□ 2.09
SSBP3-202ENST00000357475 FRMD3A2A2Y4 597 aa28.12■■■□□ 2.09
SSBP3-202ENST00000357475 PQBP1O60828 265 aaKnown RBP28.12■■■□□ 2.09
SSBP3-202ENST00000357475 RPN1P04843 607 aaKnown RBP28.12■■■□□ 2.09
SSBP3-202ENST00000357475 TMEM62Q0P6H9 643 aa28.12■■■□□ 2.09
SSBP3-202ENST00000357475 SNX17Q15036 470 aa28.12■■■□□ 2.09
SSBP3-202ENST00000357475 LRRC26Q2I0M4 334 aa28.12■■■□□ 2.09
SSBP3-202ENST00000357475 ODF2LQ9ULJ1 636 aa28.12■■■□□ 2.09
SSBP3-202ENST00000357475 SMIM35A0A1B0GVV1 85 aa28.11■■■□□ 2.09
SSBP3-202ENST00000357475 FAM13AO94988 1023 aa28.11■■■□□ 2.09
SSBP3-202ENST00000357475 MYL1P05976 194 aa28.11■■■□□ 2.09
SSBP3-202ENST00000357475 ZNF131P52739 623 aa28.11■■■□□ 2.09
SSBP3-202ENST00000357475 COASYQ13057 564 aa28.11■■■□□ 2.09
SSBP3-202ENST00000357475 KMT5BQ4FZB7 885 aa28.11■■■□□ 2.09
SSBP3-202ENST00000357475 UNC13DQ70J99 1090 aa28.11■■■□□ 2.09
SSBP3-202ENST00000357475 SFR1Q86XK3 245 aa28.11■■■□□ 2.09
SSBP3-202ENST00000357475 TNS4Q8IZW8 715 aa28.11■■■□□ 2.09
SSBP3-202ENST00000357475 SPATA20Q8TB22 786 aa28.11■■■□□ 2.09
SSBP3-202ENST00000357475 JPH2Q9BR39 696 aaPredicted RBP28.11■■■□□ 2.09
SSBP3-202ENST00000357475 FGFBP2Q9BYJ0 223 aa28.11■■■□□ 2.09
SSBP3-202ENST00000357475 TBC1D7Q9P0N9 293 aa28.11■■■□□ 2.09
SSBP3-202ENST00000357475 HOOK1Q9UJC3 728 aaKnown RBP28.11■■■□□ 2.09
SSBP3-202ENST00000357475 SIP14410 1827 aa28.11■■■□□ 2.09
SSBP3-202ENST00000357475 CCDC85CA6NKD9 419 aa28.1■■■□□ 2.09
SSBP3-202ENST00000357475 TBCAO75347 108 aaKnown RBP28.1■■■□□ 2.09
SSBP3-202ENST00000357475 SARSP49591 514 aaKnown RBP28.1■■■□□ 2.09
SSBP3-202ENST00000357475 IER5Q5VY09 327 aa28.1■■■□□ 2.09
SSBP3-202ENST00000357475 ISM2Q6H9L7 571 aa28.1■■■□□ 2.09
SSBP3-202ENST00000357475 RHPN2Q8IUC4 686 aa28.1■■■□□ 2.09
SSBP3-202ENST00000357475 EXOC8Q8IYI6 725 aa28.1■■■□□ 2.09
SSBP3-202ENST00000357475 KIFAP3Q92845 792 aa28.1■■■□□ 2.09
SSBP3-202ENST00000357475 CCDC34Q96HJ3 373 aa28.1■■■□□ 2.09
SSBP3-202ENST00000357475 DRC1Q96MC2 740 aa28.1■■■□□ 2.09
SSBP3-202ENST00000357475 KIFC3Q9BVG8 833 aa28.1■■■□□ 2.09
SSBP3-202ENST00000357475 TIPINQ9BVW5 301 aa28.1■■■□□ 2.09
SSBP3-202ENST00000357475 AKT3Q9Y243 479 aa28.1■■■□□ 2.09
SSBP3-202ENST00000357475 GAS2O43903 313 aaKnown RBP28.09■■■□□ 2.09
SSBP3-202ENST00000357475 CD4P01730 458 aa28.09■■■□□ 2.09
SSBP3-202ENST00000357475 CAPN2P17655 700 aa28.09■■■□□ 2.09
SSBP3-202ENST00000357475 PEX3P56589 373 aa28.09■■■□□ 2.09
SSBP3-202ENST00000357475 EHHADHQ08426 723 aa28.09■■■□□ 2.09
SSBP3-202ENST00000357475 CAPSQ13938 189 aa28.09■■■□□ 2.09
SSBP3-202ENST00000357475 MYCT1Q8N699 235 aa28.09■■■□□ 2.09
SSBP3-202ENST00000357475 GLIS3Q8NEA6 775 aa28.09■■■□□ 2.09
SSBP3-202ENST00000357475 TCP11Q8WWU5 503 aa28.09■■■□□ 2.09
SSBP3-202ENST00000357475 PSPC1Q8WXF1 523 aaKnown RBP28.09■■■□□ 2.09
SSBP3-202ENST00000357475 SMARCE1Q969G3 411 aa28.09■■■□□ 2.09
SSBP3-202ENST00000357475 FIZ1Q96SL8 496 aa28.09■■■□□ 2.09
SSBP3-202ENST00000357475 PARVGQ9HBI0 331 aa28.09■■■□□ 2.09
SSBP3-202ENST00000357475 KIAA1468Q9P260 1216 aa28.09■■■□□ 2.09
SSBP3-202ENST00000357475 BIN1O00499 593 aa28.08■■■□□ 2.09
SSBP3-202ENST00000357475 LAMTOR4Q0VGL1 99 aa28.08■■■□□ 2.09
SSBP3-202ENST00000357475 TRIM71Q2Q1W2 868 aaKnown RBP28.08■■■□□ 2.09
SSBP3-202ENST00000357475 RBM43Q6ZSC3 357 aaKnown RBP28.08■■■□□ 2.09
SSBP3-202ENST00000357475 MAN1B1Q9UKM7 699 aa28.08■■■□□ 2.09
SSBP3-202ENST00000357475 NOD1Q9Y239 953 aa28.08■■■□□ 2.09
SSBP3-202ENST00000357475 ADGRA3Q8IWK6 1321 aa28.08■■■□□ 2.09
SSBP3-202ENST00000357475 PVALEFA0A1B0GWK0 134 aa28.08■■■□□ 2.08
SSBP3-202ENST00000357475 PLS3P13797 630 aa28.08■■■□□ 2.08
SSBP3-202ENST00000357475 TMOD1P28289 359 aa28.08■■■□□ 2.08
SSBP3-202ENST00000357475 DNM2P50570 870 aa28.08■■■□□ 2.08
SSBP3-202ENST00000357475 RTP1P59025 263 aa28.08■■■□□ 2.08
SSBP3-202ENST00000357475 TLE2Q04725 743 aa28.08■■■□□ 2.08
SSBP3-202ENST00000357475 HERC4Q5GLZ8 1057 aaPredicted RBP28.08■■■□□ 2.08
SSBP3-202ENST00000357475 C1orf53Q5VUE5 145 aa28.08■■■□□ 2.08
SSBP3-202ENST00000357475 ANKRD33Q7Z3H0 272 aa28.08■■■□□ 2.08
SSBP3-202ENST00000357475 CCDC65Q8IXS2 484 aa28.08■■■□□ 2.08
SSBP3-202ENST00000357475 ATP11BQ9Y2G3 1177 aa28.08■■■□□ 2.08
SSBP3-202ENST00000357475 COL4A3BPQ9Y5P4 624 aa28.08■■■□□ 2.08
SSBP3-202ENST00000357475 NPTX2P47972 431 aa28.07■■■□□ 2.08
SSBP3-202ENST00000357475 PTK7Q13308 1070 aa28.07■■■□□ 2.08
SSBP3-202ENST00000357475 ODR4Q5SWX8 454 aa28.07■■■□□ 2.08
SSBP3-202ENST00000357475 NT5DC1Q5TFE4 455 aa28.07■■■□□ 2.08
SSBP3-202ENST00000357475 TAF2Q6P1X5 1199 aa28.07■■■□□ 2.08
SSBP3-202ENST00000357475 NLRP4Q96MN2 994 aa28.07■■■□□ 2.08
SSBP3-202ENST00000357475 MAP7D2Q96T17 732 aa28.07■■■□□ 2.08
SSBP3-202ENST00000357475 CDHR5Q9HBB8 845 aa28.07■■■□□ 2.08
SSBP3-202ENST00000357475 SMC2O95347 1197 aa28.06■■■□□ 2.08
SSBP3-202ENST00000357475 SRGAP2CP0DJJ0 459 aa28.06■■■□□ 2.08
Retrieved 100 of 20,778 RNA–protein pairs in 24.3 ms