RNA–Protein interactions for RNA: ENST00000348544.4

VPS39-202, Transcript of VPS39, HOPS complex subunit, humanhuman

TSL 1 (best) BASIC

Gene VPS39, Length 2,661 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS39-202ENST00000348544 VSTM1Q6UX27 236 aa7.35□□□□□ -1.23
VPS39-202ENST00000348544 OTUD6AQ7L8S5 288 aa7.35□□□□□ -1.23
VPS39-202ENST00000348544 SPATA21Q7Z572 469 aa7.35□□□□□ -1.23
VPS39-202ENST00000348544 ZC3H3Q8IXZ2 948 aaKnown RBP7.35□□□□□ -1.23
VPS39-202ENST00000348544 LNX1Q8TBB1 728 aaPredicted RBP7.35□□□□□ -1.23
VPS39-202ENST00000348544 SNX29Q8TEQ0 813 aa7.35□□□□□ -1.23
VPS39-202ENST00000348544 PIGBQ92521 554 aa7.35□□□□□ -1.23
VPS39-202ENST00000348544 C18orf8Q96DM3 657 aa7.35□□□□□ -1.23
VPS39-202ENST00000348544 CDK5RAP3Q96JB5 506 aa7.35□□□□□ -1.23
VPS39-202ENST00000348544 SYT15Q9BQS2 421 aa7.35□□□□□ -1.23
VPS39-202ENST00000348544 MOV10L1Q9BXT6 1211 aaKnown RBP7.35□□□□□ -1.23
VPS39-202ENST00000348544 RXFP1Q9HBX9 757 aa7.35□□□□□ -1.23
VPS39-202ENST00000348544 TMOD3Q9NYL9 352 aa7.35□□□□□ -1.23
VPS39-202ENST00000348544 BIN2Q9UBW5 565 aaPredicted RBP7.35□□□□□ -1.23
VPS39-202ENST00000348544 CNOT7Q9UIV1 285 aaKnown RBP7.35□□□□□ -1.23
VPS39-202ENST00000348544 LRRC42Q9Y546 428 aa7.35□□□□□ -1.23
VPS39-202ENST00000348544 PCDHA3Q9Y5H8 950 aa7.35□□□□□ -1.23
VPS39-202ENST00000348544 NPHP3-ACAD11A0A0J9YXS1 232 aa7.34□□□□□ -1.23
VPS39-202ENST00000348544 TMEM120BA0PK00 339 aa7.34□□□□□ -1.23
VPS39-202ENST00000348544 PALM3A6NDB9 673 aaPredicted RBP7.34□□□□□ -1.23
VPS39-202ENST00000348544 ANKRD63C9JTQ0 380 aa7.34□□□□□ -1.23
VPS39-202ENST00000348544 RASGRF2O14827 1237 aa7.34□□□□□ -1.23
VPS39-202ENST00000348544 PEX11AO75192 247 aa7.34□□□□□ -1.23
VPS39-202ENST00000348544 FLOT1O75955 427 aa7.34□□□□□ -1.23
VPS39-202ENST00000348544 ADAMTS2O95450 1211 aa7.34□□□□□ -1.23
VPS39-202ENST00000348544 GH1P01241 217 aa7.34□□□□□ -1.23
VPS39-202ENST00000348544 USP17L8P0C7I0 530 aa7.34□□□□□ -1.23
VPS39-202ENST00000348544 CYP19A1P11511 503 aaPredicted RBP7.34□□□□□ -1.23
VPS39-202ENST00000348544 NEFHP12036 1026 aa7.34□□□□□ -1.23
VPS39-202ENST00000348544 FERP16591 822 aa7.34□□□□□ -1.23
VPS39-202ENST00000348544 PON1P27169 355 aa7.34□□□□□ -1.23
VPS39-202ENST00000348544 PAPOLAP51003 745 aaKnown RBP7.34□□□□□ -1.23
VPS39-202ENST00000348544 GALCP54803 685 aa7.34□□□□□ -1.23
VPS39-202ENST00000348544 NPEPPSP55786 919 aa7.34□□□□□ -1.23
VPS39-202ENST00000348544 ATP11AP98196 1134 aa7.34□□□□□ -1.23
VPS39-202ENST00000348544 PPATQ06203 517 aa7.34□□□□□ -1.23
VPS39-202ENST00000348544 MAPK7Q13164 816 aa7.34□□□□□ -1.23
VPS39-202ENST00000348544 CALCRLQ16602 461 aa7.34□□□□□ -1.23
VPS39-202ENST00000348544 GJB7Q6PEY0 223 aa7.34□□□□□ -1.23
VPS39-202ENST00000348544 BTNL9Q6UXG8 535 aa7.34□□□□□ -1.23
VPS39-202ENST00000348544 DGKHQ86XP1 1220 aa7.34□□□□□ -1.23
VPS39-202ENST00000348544 ZDHHC14Q8IZN3 488 aa7.34□□□□□ -1.23
VPS39-202ENST00000348544 SYCE1Q8N0S2 351 aa7.34□□□□□ -1.23
VPS39-202ENST00000348544 GBP7Q8N8V2 638 aaPredicted RBP7.34□□□□□ -1.23
VPS39-202ENST00000348544 CNBD1Q8NA66 436 aa7.34□□□□□ -1.23
VPS39-202ENST00000348544 U2AF1L4Q8WU68 220 aaKnown RBP7.34□□□□□ -1.23
VPS39-202ENST00000348544 SCFD1Q8WVM8 642 aa7.34□□□□□ -1.23
VPS39-202ENST00000348544 ALG3Q92685 438 aa7.34□□□□□ -1.23
VPS39-202ENST00000348544 GJA10Q969M2 543 aa7.34□□□□□ -1.23
VPS39-202ENST00000348544 NSUN4Q96CB9 384 aaKnown RBP7.34□□□□□ -1.23
VPS39-202ENST00000348544 DYNLL2Q96FJ2 89 aa7.34□□□□□ -1.23
VPS39-202ENST00000348544 IFT74Q96LB3 600 aa7.34□□□□□ -1.23
VPS39-202ENST00000348544 SIX2Q9NPC8 291 aa7.34□□□□□ -1.23
VPS39-202ENST00000348544 PAPOLBQ9NRJ5 636 aaKnown RBP7.34□□□□□ -1.23
VPS39-202ENST00000348544 HDAC9Q9UKV0 1011 aa7.34□□□□□ -1.23
VPS39-202ENST00000348544 AMFRQ9UKV5 643 aa7.34□□□□□ -1.23
VPS39-202ENST00000348544 ARL2BPQ9Y2Y0 163 aa7.34□□□□□ -1.23
VPS39-202ENST00000348544 BZW2Q9Y6E2 419 aaKnown RBP7.34□□□□□ -1.23
VPS39-202ENST00000348544 DCCP43146 1447 aa7.34□□□□□ -1.23
VPS39-202ENST00000348544 SCN7AQ01118 1682 aa7.34□□□□□ -1.23
VPS39-202ENST00000348544 GPR75-ASB3A0A0A6YYF3 556 aa7.34□□□□□ -1.23
VPS39-202ENST00000348544 FAM187AA6NFU0 413 aa7.34□□□□□ -1.23
VPS39-202ENST00000348544 O00370 1275 aa7.34□□□□□ -1.23
VPS39-202ENST00000348544 GNA14O95837 355 aa7.34□□□□□ -1.23
VPS39-202ENST00000348544 PDHA1P08559 390 aa7.34□□□□□ -1.23
VPS39-202ENST00000348544 GNAQP50148 359 aa7.34□□□□□ -1.23
VPS39-202ENST00000348544 DRG2P55039 364 aaKnown RBP7.34□□□□□ -1.23
VPS39-202ENST00000348544 JAM2P57087 298 aa7.34□□□□□ -1.23
VPS39-202ENST00000348544 MECOMQ03112 1051 aa7.34□□□□□ -1.23
VPS39-202ENST00000348544 ADAM9Q13443 819 aa7.34□□□□□ -1.23
VPS39-202ENST00000348544 SLC5A9Q2M3M2 681 aa7.34□□□□□ -1.23
VPS39-202ENST00000348544 MFSD5Q6N075 450 aa7.34□□□□□ -1.23
VPS39-202ENST00000348544 TTC27Q6P3X3 843 aa7.34□□□□□ -1.23
VPS39-202ENST00000348544 ECHDC2Q86YB7 292 aa7.34□□□□□ -1.23
VPS39-202ENST00000348544 HOMEZQ8IX15 550 aa7.34□□□□□ -1.23
VPS39-202ENST00000348544 TSC22D3Q99576 134 aa7.34□□□□□ -1.23
VPS39-202ENST00000348544 CPSF2Q9P2I0 782 aaKnown RBP7.34□□□□□ -1.23
VPS39-202ENST00000348544 ASB3Q9Y575 518 aa7.34□□□□□ -1.23
VPS39-202ENST00000348544 PFASO15067 1338 aa7.34□□□□□ -1.23
VPS39-202ENST00000348544 ATP8B3O60423 1300 aa7.34□□□□□ -1.23
VPS39-202ENST00000348544 GOLGA6L10A0A0M3HER8 536 aa7.34□□□□□ -1.24
VPS39-202ENST00000348544 UNC5CO95185 931 aa7.34□□□□□ -1.24
VPS39-202ENST00000348544 RTN3O95197 1032 aaPredicted RBP7.34□□□□□ -1.24
VPS39-202ENST00000348544 VCAM1P19320 739 aa7.34□□□□□ -1.24
VPS39-202ENST00000348544 IGHMBP2P38935 993 aaKnown RBP7.34□□□□□ -1.24
VPS39-202ENST00000348544 EPS15P42566 896 aa7.34□□□□□ -1.24
VPS39-202ENST00000348544 TRAF1Q13077 416 aa7.34□□□□□ -1.24
VPS39-202ENST00000348544 DHX34Q14147 1143 aaKnown RBP7.34□□□□□ -1.24
VPS39-202ENST00000348544 LONRF1Q17RB8 773 aa7.34□□□□□ -1.24
VPS39-202ENST00000348544 ZNF568Q3ZCX4 644 aa7.34□□□□□ -1.24
VPS39-202ENST00000348544 SBK1Q52WX2 424 aa7.34□□□□□ -1.24
VPS39-202ENST00000348544 MFN1Q8IWA4 741 aa7.34□□□□□ -1.24
VPS39-202ENST00000348544 TEX9Q8N6V9 391 aa7.34□□□□□ -1.24
VPS39-202ENST00000348544 PRELID2Q8N945 189 aa7.34□□□□□ -1.24
VPS39-202ENST00000348544 GDAP1Q8TB36 358 aa7.34□□□□□ -1.24
VPS39-202ENST00000348544 SLC35G2Q8TBE7 412 aa7.34□□□□□ -1.24
VPS39-202ENST00000348544 DYDC1Q8WWB3 177 aa7.34□□□□□ -1.24
VPS39-202ENST00000348544 ARHGEF26Q96DR7 871 aa7.34□□□□□ -1.24
VPS39-202ENST00000348544 ANKRD27Q96NW4 1050 aa7.34□□□□□ -1.24
VPS39-202ENST00000348544 DDX23Q9BUQ8 820 aaKnown RBP7.34□□□□□ -1.24
Retrieved 100 of 20,778 RNA–protein pairs in 21.5 ms