RNA–Protein interactions for RNA: ENST00000341307.6

RTN3-203, Transcript of reticulon 3, humanhuman

TSL 2 BASIC

Gene RTN3, Length 2,524 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
RTN3-203ENST00000341307 ATP11AP98196 1134 aa12.84□□□□□ -0.35
RTN3-203ENST00000341307 TRIM14Q14142 442 aa12.84□□□□□ -0.35
RTN3-203ENST00000341307 TYW1BQ6NUM6 668 aa12.84□□□□□ -0.35
RTN3-203ENST00000341307 SPATA31D4Q6ZUB0 917 aa12.84□□□□□ -0.35
RTN3-203ENST00000341307 CACNA2D4Q7Z3S7 1137 aa12.84□□□□□ -0.35
RTN3-203ENST00000341307 SLF2Q8IX21 1173 aa12.84□□□□□ -0.35
RTN3-203ENST00000341307 WHAMMQ8TF30 809 aa12.84□□□□□ -0.35
RTN3-203ENST00000341307 NCSTNQ92542 709 aa12.84□□□□□ -0.35
RTN3-203ENST00000341307 CEP95Q96GE4 821 aa12.84□□□□□ -0.35
RTN3-203ENST00000341307 PSMB7Q99436 277 aa12.84□□□□□ -0.35
RTN3-203ENST00000341307 NOVA2Q9UNW9 492 aaKnown RBP12.84□□□□□ -0.35
RTN3-203ENST00000341307 TTC26A0AVF1 554 aa12.84□□□□□ -0.35
RTN3-203ENST00000341307 USO1O60763 962 aaKnown RBP12.84□□□□□ -0.35
RTN3-203ENST00000341307 KRT83P78385 493 aa12.84□□□□□ -0.35
RTN3-203ENST00000341307 ZNF174Q15697 407 aa12.84□□□□□ -0.35
RTN3-203ENST00000341307 PFKFB3Q16875 520 aaPredicted RBP12.84□□□□□ -0.35
RTN3-203ENST00000341307 ODF2Q5BJF6 829 aa12.84□□□□□ -0.35
RTN3-203ENST00000341307 AGBL2Q5U5Z8 902 aa12.84□□□□□ -0.35
RTN3-203ENST00000341307 RUFY4Q6ZNE9 571 aa12.84□□□□□ -0.35
RTN3-203ENST00000341307 PIK3AP1Q6ZUJ8 805 aa12.84□□□□□ -0.35
RTN3-203ENST00000341307 ZBTB8BQ8NAP8 495 aaPredicted RBP12.84□□□□□ -0.35
RTN3-203ENST00000341307 SPATA20Q8TB22 786 aa12.84□□□□□ -0.35
RTN3-203ENST00000341307 RASGRP4Q8TDF6 673 aa12.84□□□□□ -0.35
RTN3-203ENST00000341307 DYDC1Q8WWB3 177 aa12.84□□□□□ -0.35
RTN3-203ENST00000341307 VCXQ9H320 206 aa12.84□□□□□ -0.35
RTN3-203ENST00000341307 USP40Q9NVE5 1235 aa12.84□□□□□ -0.35
RTN3-203ENST00000341307 SWAP70Q9UH65 585 aa12.84□□□□□ -0.35
RTN3-203ENST00000341307 CAPN6Q9Y6Q1 641 aa12.84□□□□□ -0.35
RTN3-203ENST00000341307 GOLGA6L10A0A0M3HER8 536 aa12.83□□□□□ -0.36
RTN3-203ENST00000341307 HIP1RO75146 1068 aa12.83□□□□□ -0.36
RTN3-203ENST00000341307 MAGOHP61326 146 aaKnown RBP12.83□□□□□ -0.36
RTN3-203ENST00000341307 LACTBP83111 547 aaPredicted RBP12.83□□□□□ -0.36
RTN3-203ENST00000341307 USP17L2Q6R6M4 530 aa12.83□□□□□ -0.36
RTN3-203ENST00000341307 ASRGL1Q7L266 308 aa12.83□□□□□ -0.36
RTN3-203ENST00000341307 RNF168Q8IYW5 571 aaPredicted RBP12.83□□□□□ -0.36
RTN3-203ENST00000341307 SPIRE2Q8WWL2 714 aa12.83□□□□□ -0.36
RTN3-203ENST00000341307 PTPRN2Q92932 1015 aa12.83□□□□□ -0.36
RTN3-203ENST00000341307 TNFRSF25Q93038 417 aa12.83□□□□□ -0.36
RTN3-203ENST00000341307 MAGOHBQ96A72 148 aaKnown RBP12.83□□□□□ -0.36
RTN3-203ENST00000341307 KLHL29Q96CT2 875 aa12.83□□□□□ -0.36
RTN3-203ENST00000341307 DNAJC7Q99615 494 aa12.83□□□□□ -0.36
RTN3-203ENST00000341307 CSRNP2Q9H175 543 aa12.83□□□□□ -0.36
RTN3-203ENST00000341307 VPS16Q9H269 839 aa12.83□□□□□ -0.36
RTN3-203ENST00000341307 GGT7Q9UJ14 662 aa12.83□□□□□ -0.36
RTN3-203ENST00000341307 CTNND1O60716 968 aaKnown RBP12.83□□□□□ -0.36
RTN3-203ENST00000341307 TMCC1O94876 653 aa12.83□□□□□ -0.36
RTN3-203ENST00000341307 GNA14O95837 355 aa12.83□□□□□ -0.36
RTN3-203ENST00000341307 PTPREP23469 700 aa12.83□□□□□ -0.36
RTN3-203ENST00000341307 RAD23BP54727 409 aa12.83□□□□□ -0.36
RTN3-203ENST00000341307 NFIAQ12857 509 aa12.83□□□□□ -0.36
RTN3-203ENST00000341307 GRM4Q14833 912 aa12.83□□□□□ -0.36
RTN3-203ENST00000341307 BRD8Q9H0E9 1235 aa12.83□□□□□ -0.36
RTN3-203ENST00000341307 TRIM33Q9UPN9 1127 aa12.83□□□□□ -0.36
RTN3-203ENST00000341307 COBLO75128 1261 aa12.82□□□□□ -0.36
RTN3-203ENST00000341307 SHBGP04278 402 aa12.82□□□□□ -0.36
RTN3-203ENST00000341307 GSTA2P09210 222 aa12.82□□□□□ -0.36
RTN3-203ENST00000341307 CCDC166P0CW27 439 aa12.82□□□□□ -0.36
RTN3-203ENST00000341307 ZNF131P52739 623 aa12.82□□□□□ -0.36
RTN3-203ENST00000341307 MCL1Q07820 350 aa12.82□□□□□ -0.36
RTN3-203ENST00000341307 BNIP1Q12981 228 aa12.82□□□□□ -0.36
RTN3-203ENST00000341307 IRGCQ6NXR0 463 aa12.82□□□□□ -0.36
RTN3-203ENST00000341307 CDC42EP5Q6NZY7 148 aa12.82□□□□□ -0.36
RTN3-203ENST00000341307 TMEM110Q86TL2 294 aa12.82□□□□□ -0.36
RTN3-203ENST00000341307 ZFPM1Q8IX07 1006 aa12.82□□□□□ -0.36
RTN3-203ENST00000341307 LRRC34Q8IZ02 419 aa12.82□□□□□ -0.36
RTN3-203ENST00000341307 SLC17A8Q8NDX2 589 aa12.82□□□□□ -0.36
RTN3-203ENST00000341307 ANKS1AQ92625 1134 aa12.82□□□□□ -0.36
RTN3-203ENST00000341307 CENPTQ96BT3 561 aa12.82□□□□□ -0.36
RTN3-203ENST00000341307 FAM81BQ96LP2 452 aa12.82□□□□□ -0.36
RTN3-203ENST00000341307 LRRC4CQ9HCJ2 640 aa12.82□□□□□ -0.36
RTN3-203ENST00000341307 TCP11L1Q9NUJ3 509 aa12.82□□□□□ -0.36
RTN3-203ENST00000341307 LIMA1Q9UHB6 759 aaKnown RBP12.82□□□□□ -0.36
RTN3-203ENST00000341307 TRIM75PA6NK02 468 aa12.82□□□□□ -0.36
RTN3-203ENST00000341307 F8VZ95 297 aa12.82□□□□□ -0.36
RTN3-203ENST00000341307 POLR2DO15514 142 aaKnown RBP12.82□□□□□ -0.36
RTN3-203ENST00000341307 HNRNPRO43390 633 aaKnown RBP12.82□□□□□ -0.36
RTN3-203ENST00000341307 PFDN1O60925 122 aa12.82□□□□□ -0.36
RTN3-203ENST00000341307 CALB2P22676 271 aa12.82□□□□□ -0.36
RTN3-203ENST00000341307 COPB1P53618 953 aaKnown RBP12.82□□□□□ -0.36
RTN3-203ENST00000341307 COPS2P61201 443 aa12.82□□□□□ -0.36
RTN3-203ENST00000341307 CCNJLQ8IV13 435 aa12.82□□□□□ -0.36
RTN3-203ENST00000341307 GBP7Q8N8V2 638 aaPredicted RBP12.82□□□□□ -0.36
RTN3-203ENST00000341307 EPSTI1Q96J88 318 aa12.82□□□□□ -0.36
RTN3-203ENST00000341307 ELAC2Q9BQ52 826 aaKnown RBP12.82□□□□□ -0.36
RTN3-203ENST00000341307 OXCT2Q9BYC2 517 aaPredicted RBP12.82□□□□□ -0.36
RTN3-203ENST00000341307 RNPEPL1Q9HAU8 725 aa12.82□□□□□ -0.36
RTN3-203ENST00000341307 BARX2Q9UMQ3 279 aaPredicted RBP12.82□□□□□ -0.36
RTN3-203ENST00000341307 E7ENQ6 273 aa12.81□□□□□ -0.36
RTN3-203ENST00000341307 PEX11AO75192 247 aa12.81□□□□□ -0.36
RTN3-203ENST00000341307 TPBGLP0DKB5 382 aa12.81□□□□□ -0.36
RTN3-203ENST00000341307 AKR1B1P15121 316 aa12.81□□□□□ -0.36
RTN3-203ENST00000341307 PHEXP78562 749 aa12.81□□□□□ -0.36
RTN3-203ENST00000341307 DPYDQ12882 1025 aa12.81□□□□□ -0.36
RTN3-203ENST00000341307 AOC3Q16853 763 aa12.81□□□□□ -0.36
RTN3-203ENST00000341307 CNPY1Q3B7I2 92 aa12.81□□□□□ -0.36
RTN3-203ENST00000341307 KBTBD12Q3ZCT8 623 aa12.81□□□□□ -0.36
RTN3-203ENST00000341307 APOBEC3HQ6NTF7 200 aaKnown RBP12.81□□□□□ -0.36
RTN3-203ENST00000341307 HEATR3Q7Z4Q2 680 aa12.81□□□□□ -0.36
RTN3-203ENST00000341307 SMC1BQ8NDV3 1235 aa12.81□□□□□ -0.36
RTN3-203ENST00000341307 NEDD1Q8NHV4 660 aa12.81□□□□□ -0.36
Retrieved 100 of 20,778 RNA–protein pairs in 36.2 ms