RNA–Protein interactions for RNA: ENST00000341247.8

LIMA1-201, Transcript of LIM domain and actin binding 1, humanhuman

APPRIS P3 TSL 1 (best) BASIC

Gene LIMA1, Length 3,706 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMA1-201ENST00000341247 ZKSCAN4Q969J2 545 aaPredicted RBP11.29□□□□□ -0.6
LIMA1-201ENST00000341247 CHORDC1Q9UHD1 332 aaPredicted RBP11.29□□□□□ -0.6
LIMA1-201ENST00000341247 DNAJC12Q9UKB3 198 aa11.29□□□□□ -0.6
LIMA1-201ENST00000341247 STK24Q9Y6E0 443 aa11.29□□□□□ -0.6
LIMA1-201ENST00000341247 PHF20L1A8MW92 1017 aa11.28□□□□□ -0.6
LIMA1-201ENST00000341247 EVI5O60447 810 aa11.28□□□□□ -0.6
LIMA1-201ENST00000341247 HOXA7P31268 230 aaPredicted RBP11.28□□□□□ -0.6
LIMA1-201ENST00000341247 FMO5P49326 533 aa11.28□□□□□ -0.6
LIMA1-201ENST00000341247 DRAP1Q14919 205 aaPredicted RBP11.28□□□□□ -0.6
LIMA1-201ENST00000341247 TKFCQ3LXA3 575 aa11.28□□□□□ -0.6
LIMA1-201ENST00000341247 CFAP221Q4G0U5 840 aa11.28□□□□□ -0.6
LIMA1-201ENST00000341247 NBPF12Q5TAG4 269 aaPredicted RBP11.28□□□□□ -0.6
LIMA1-201ENST00000341247 FAM84AQ96KN4 292 aa11.28□□□□□ -0.6
LIMA1-201ENST00000341247 TEPSINQ96N21 525 aa11.28□□□□□ -0.6
LIMA1-201ENST00000341247 CBWD1Q9BRT8 395 aa11.28□□□□□ -0.6
LIMA1-201ENST00000341247 HPCAL4Q9UM19 191 aa11.28□□□□□ -0.6
LIMA1-201ENST00000341247 FRMPD4Q14CM0 1322 aa11.28□□□□□ -0.6
LIMA1-201ENST00000341247 BRCA1P38398 1863 aaKnown RBP11.28□□□□□ -0.6
LIMA1-201ENST00000341247 SLC26A4O43511 780 aa11.28□□□□□ -0.6
LIMA1-201ENST00000341247 GGCXP38435 758 aa11.28□□□□□ -0.6
LIMA1-201ENST00000341247 RNF10Q8N5U6 811 aaKnown RBP11.28□□□□□ -0.6
LIMA1-201ENST00000341247 AGBL3Q8NEM8 1001 aa11.28□□□□□ -0.6
LIMA1-201ENST00000341247 RPAP3Q9H6T3 665 aaPredicted RBP11.28□□□□□ -0.6
LIMA1-201ENST00000341247 ATAD5Q96QE3 1844 aa11.27□□□□□ -0.6
LIMA1-201ENST00000341247 SLC16A4O15374 487 aa11.27□□□□□ -0.6
LIMA1-201ENST00000341247 CEP104O60308 925 aa11.27□□□□□ -0.6
LIMA1-201ENST00000341247 GCLMP48507 274 aa11.27□□□□□ -0.6
LIMA1-201ENST00000341247 PEX3P56589 373 aa11.27□□□□□ -0.6
LIMA1-201ENST00000341247 SETQ01105 290 aaPredicted RBP11.27□□□□□ -0.6
LIMA1-201ENST00000341247 FAM83AQ86UY5 434 aa11.27□□□□□ -0.6
LIMA1-201ENST00000341247 TXLNBQ8N3L3 684 aa11.27□□□□□ -0.6
LIMA1-201ENST00000341247 SYTL5Q8TDW5 730 aaPredicted RBP11.27□□□□□ -0.6
LIMA1-201ENST00000341247 TAF4BQ92750 862 aa11.27□□□□□ -0.6
LIMA1-201ENST00000341247 ATG4CQ96DT6 458 aa11.27□□□□□ -0.6
LIMA1-201ENST00000341247 AP1M1Q9BXS5 423 aa11.27□□□□□ -0.6
LIMA1-201ENST00000341247 TAOK3Q9H2K8 898 aa11.27□□□□□ -0.6
LIMA1-201ENST00000341247 PLCB1Q9NQ66 1216 aa11.27□□□□□ -0.6
LIMA1-201ENST00000341247 PIM2Q9P1W9 311 aa11.27□□□□□ -0.6
LIMA1-201ENST00000341247 RIPK3Q9Y572 518 aa11.27□□□□□ -0.6
LIMA1-201ENST00000341247 DDX3XO00571 662 aaKnown RBP eCLIP11.27□□□□□ -0.61
LIMA1-201ENST00000341247 RNF40O75150 1001 aa11.27□□□□□ -0.61
LIMA1-201ENST00000341247 VCAM1P19320 739 aa11.27□□□□□ -0.61
LIMA1-201ENST00000341247 GUCY2FP51841 1108 aa11.27□□□□□ -0.61
LIMA1-201ENST00000341247 GUCY2DQ02846 1103 aa11.27□□□□□ -0.61
LIMA1-201ENST00000341247 MAPK7Q13164 816 aa11.27□□□□□ -0.61
LIMA1-201ENST00000341247 TNIP1Q15025 636 aa11.27□□□□□ -0.61
LIMA1-201ENST00000341247 FAM102BQ5T8I3 360 aa11.27□□□□□ -0.61
LIMA1-201ENST00000341247 MICALL2Q8IY33 904 aa11.27□□□□□ -0.61
LIMA1-201ENST00000341247 RMDN3Q96TC7 470 aa11.27□□□□□ -0.61
LIMA1-201ENST00000341247 FAM204AQ9H8W3 233 aa11.27□□□□□ -0.61
LIMA1-201ENST00000341247 OSGEPQ9NPF4 335 aa11.27□□□□□ -0.61
LIMA1-201ENST00000341247 TELO2Q9Y4R8 837 aa11.27□□□□□ -0.61
LIMA1-201ENST00000341247 CCDC169A6NNP5 214 aa11.27□□□□□ -0.61
LIMA1-201ENST00000341247 EIF3DO15371 548 aaKnown RBP eCLIP11.27□□□□□ -0.61
LIMA1-201ENST00000341247 SLC16A3O15427 465 aaKnown RBP11.27□□□□□ -0.61
LIMA1-201ENST00000341247 GLI1P08151 1106 aa11.27□□□□□ -0.61
LIMA1-201ENST00000341247 STAT1P42224 750 aa11.27□□□□□ -0.61
LIMA1-201ENST00000341247 MYL7Q01449 175 aa11.27□□□□□ -0.61
LIMA1-201ENST00000341247 RPS6KA1Q15418 735 aa11.27□□□□□ -0.61
LIMA1-201ENST00000341247 DNAJC21Q5F1R6 531 aaKnown RBP11.27□□□□□ -0.61
LIMA1-201ENST00000341247 ADAT2Q7Z6V5 191 aaKnown RBP11.27□□□□□ -0.61
LIMA1-201ENST00000341247 MMGT1Q8N4V1 131 aa11.27□□□□□ -0.61
LIMA1-201ENST00000341247 TARSL2A2RTX5 802 aaKnown RBP11.26□□□□□ -0.61
LIMA1-201ENST00000341247 BACH1O14867 736 aa11.26□□□□□ -0.61
LIMA1-201ENST00000341247 TBC1D12O60347 775 aa11.26□□□□□ -0.61
LIMA1-201ENST00000341247 PEX10O60683 326 aa11.26□□□□□ -0.61
LIMA1-201ENST00000341247 P4HBP07237 508 aaKnown RBP11.26□□□□□ -0.61
LIMA1-201ENST00000341247 HSD17B4P51659 736 aa11.26□□□□□ -0.61
LIMA1-201ENST00000341247 XKR9Q5GH70 373 aa11.26□□□□□ -0.61
LIMA1-201ENST00000341247 PALB2Q86YC2 1186 aa11.26□□□□□ -0.61
LIMA1-201ENST00000341247 BORCS6Q96GS4 357 aa11.26□□□□□ -0.61
LIMA1-201ENST00000341247 INTS2Q9H0H0 1204 aaKnown RBP11.26□□□□□ -0.61
LIMA1-201ENST00000341247 AGO4Q9HCK5 861 aaKnown RBP11.26□□□□□ -0.61
LIMA1-201ENST00000341247 EPB41L5Q9HCM4 733 aa11.26□□□□□ -0.61
LIMA1-201ENST00000341247 NFU1Q9UMS0 254 aa11.26□□□□□ -0.61
LIMA1-201ENST00000341247 DHX15O43143 795 aaKnown RBP11.26□□□□□ -0.61
LIMA1-201ENST00000341247 HEXIM1O94992 359 aaKnown RBP11.26□□□□□ -0.61
LIMA1-201ENST00000341247 TUBBP07437 444 aa11.26□□□□□ -0.61
LIMA1-201ENST00000341247 CAPN2P17655 700 aa11.26□□□□□ -0.61
LIMA1-201ENST00000341247 MCM3P25205 808 aa11.26□□□□□ -0.61
LIMA1-201ENST00000341247 CARSP49589 748 aaKnown RBP11.26□□□□□ -0.61
LIMA1-201ENST00000341247 MEI1Q5TIA1 1274 aa11.26□□□□□ -0.61
LIMA1-201ENST00000341247 ARHGEF16Q5VV41 709 aa11.26□□□□□ -0.61
LIMA1-201ENST00000341247 NAA35Q5VZE5 725 aa11.26□□□□□ -0.61
LIMA1-201ENST00000341247 ZNF746Q6NUN9 644 aaPredicted RBP11.26□□□□□ -0.61
LIMA1-201ENST00000341247 STXBP4Q6ZWJ1 553 aa11.26□□□□□ -0.61
LIMA1-201ENST00000341247 VPS36Q86VN1 386 aa11.26□□□□□ -0.61
LIMA1-201ENST00000341247 LNX1Q8TBB1 728 aaPredicted RBP11.26□□□□□ -0.61
LIMA1-201ENST00000341247 CCDC127Q96BQ5 260 aa11.26□□□□□ -0.61
LIMA1-201ENST00000341247 DEFB129Q9H1M3 183 aa11.26□□□□□ -0.61
LIMA1-201ENST00000341247 ACBD3Q9H3P7 528 aa11.26□□□□□ -0.61
LIMA1-201ENST00000341247 RABEP2Q9H5N1 569 aa11.26□□□□□ -0.61
LIMA1-201ENST00000341247 ACP6Q9NPH0 428 aa11.26□□□□□ -0.61
LIMA1-201ENST00000341247 TAS2R14Q9NYV8 317 aa11.26□□□□□ -0.61
LIMA1-201ENST00000341247 STIM2Q9P246 746 aa11.26□□□□□ -0.61
LIMA1-201ENST00000341247 HACL1Q9UJ83 578 aa11.26□□□□□ -0.61
LIMA1-201ENST00000341247 USP20Q9Y2K6 914 aa11.26□□□□□ -0.61
LIMA1-201ENST00000341247 EMSYQ7Z589 1322 aa11.26□□□□□ -0.61
LIMA1-201ENST00000341247 COL2A1P02458 1487 aaPredicted RBP11.26□□□□□ -0.61
LIMA1-201ENST00000341247 SYF2O95926 243 aaKnown RBP11.26□□□□□ -0.61
Retrieved 100 of 20,778 RNA–protein pairs in 15.4 ms