RNA–Protein interactions for RNA: ENST00000339859.8

USP54-201, Transcript of ubiquitin specific peptidase 54, humanhuman

APPRIS P1 TSL 5 BASIC

Gene USP54, Length 6,247 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP54-201ENST00000339859 SREBF1P36956 1147 aa10.99□□□□□ -0.65
USP54-201ENST00000339859 TROAPQ12815 778 aa10.99□□□□□ -0.65
USP54-201ENST00000339859 VEPH1Q14D04 833 aa10.99□□□□□ -0.65
USP54-201ENST00000339859 ZNF365Q70YC5 407 aa10.99□□□□□ -0.65
USP54-201ENST00000339859 PEX26Q7Z412 305 aa10.99□□□□□ -0.65
USP54-201ENST00000339859 MAATS1Q7Z4T9 603 aa10.99□□□□□ -0.65
USP54-201ENST00000339859 MAP7D3Q8IWC1 876 aa10.99□□□□□ -0.65
USP54-201ENST00000339859 GPR161Q8N6U8 529 aaKnown RBP10.99□□□□□ -0.65
USP54-201ENST00000339859 KLRG1Q96E93 195 aa10.99□□□□□ -0.65
USP54-201ENST00000339859 CAPZA3Q96KX2 299 aa10.99□□□□□ -0.65
USP54-201ENST00000339859 CAPNS2Q96L46 248 aa10.99□□□□□ -0.65
USP54-201ENST00000339859 APBA2Q99767 749 aa10.99□□□□□ -0.65
USP54-201ENST00000339859 RANBP17Q9H2T7 1088 aaKnown RBP10.99□□□□□ -0.65
USP54-201ENST00000339859 AGO2Q9UKV8 859 aaKnown RBP10.99□□□□□ -0.65
USP54-201ENST00000339859 CD58P19256 250 aa10.99□□□□□ -0.65
USP54-201ENST00000339859 Q4G0T1 1027 aa10.99□□□□□ -0.65
USP54-201ENST00000339859 RINT1Q6NUQ1 792 aa10.99□□□□□ -0.65
USP54-201ENST00000339859 GLB1LQ6UWU2 654 aa10.99□□□□□ -0.65
USP54-201ENST00000339859 SHCBP1Q8NEM2 672 aa10.99□□□□□ -0.65
USP54-201ENST00000339859 TMEM143Q96AN5 459 aa10.99□□□□□ -0.65
USP54-201ENST00000339859 POLR3CQ9BUI4 534 aaPredicted RBP10.99□□□□□ -0.65
USP54-201ENST00000339859 UNC45AQ9H3U1 944 aa10.99□□□□□ -0.65
USP54-201ENST00000339859 HSF2BPO75031 334 aa10.99□□□□□ -0.65
USP54-201ENST00000339859 NOTUMQ6P988 496 aa10.99□□□□□ -0.65
USP54-201ENST00000339859 HAUS6Q7Z4H7 955 aa10.99□□□□□ -0.65
USP54-201ENST00000339859 SMYD4Q8IYR2 804 aaPredicted RBP10.99□□□□□ -0.65
USP54-201ENST00000339859 XPO4Q9C0E2 1151 aaKnown RBP10.99□□□□□ -0.65
USP54-201ENST00000339859 IQCGQ9H095 443 aaKnown RBP10.99□□□□□ -0.65
USP54-201ENST00000339859 SLITRK6Q9H5Y7 841 aa10.99□□□□□ -0.65
USP54-201ENST00000339859 RIOX1Q9H6W3 641 aa10.99□□□□□ -0.65
USP54-201ENST00000339859 KIF9Q9HAQ2 790 aa10.99□□□□□ -0.65
USP54-201ENST00000339859 SLC38A10Q9HBR0 1119 aa10.99□□□□□ -0.65
USP54-201ENST00000339859 UQCRHLA0A096LP55 91 aa10.99□□□□□ -0.65
USP54-201ENST00000339859 TADA2AO75478 443 aa10.99□□□□□ -0.65
USP54-201ENST00000339859 UQCRHP07919 91 aa10.99□□□□□ -0.65
USP54-201ENST00000339859 IQSEC1Q6DN90 963 aa10.99□□□□□ -0.65
USP54-201ENST00000339859 SYTL5Q8TDW5 730 aaPredicted RBP10.99□□□□□ -0.65
USP54-201ENST00000339859 NAPGQ99747 312 aaPredicted RBP10.99□□□□□ -0.65
USP54-201ENST00000339859 RGL1Q9NZL6 768 aa10.99□□□□□ -0.65
USP54-201ENST00000339859 FZD9O00144 591 aa10.99□□□□□ -0.65
USP54-201ENST00000339859 ARHGAP6O43182 974 aa10.99□□□□□ -0.65
USP54-201ENST00000339859 FXR2P51116 673 aaKnown RBP eCLIP10.99□□□□□ -0.65
USP54-201ENST00000339859 ACVR2BQ13705 512 aa10.99□□□□□ -0.65
USP54-201ENST00000339859 ANKS1AQ92625 1134 aa10.99□□□□□ -0.65
USP54-201ENST00000339859 MKL1Q969V6 931 aa10.99□□□□□ -0.65
USP54-201ENST00000339859 ZNF668Q96K58 619 aaPredicted RBP10.99□□□□□ -0.65
USP54-201ENST00000339859 SENP2Q9HC62 589 aa10.99□□□□□ -0.65
USP54-201ENST00000339859 EIF4ENIF1Q9NRA8 985 aaKnown RBP10.99□□□□□ -0.65
USP54-201ENST00000339859 RGPD2P0DJD1 1756 aa10.99□□□□□ -0.65
USP54-201ENST00000339859 IL18RAPO95256 599 aa10.98□□□□□ -0.65
USP54-201ENST00000339859 RNASE9P60153 205 aaKnown RBP10.98□□□□□ -0.65
USP54-201ENST00000339859 SNRPFP62306 86 aaKnown RBP10.98□□□□□ -0.65
USP54-201ENST00000339859 KRT17Q04695 432 aa10.98□□□□□ -0.65
USP54-201ENST00000339859 PGM5Q15124 567 aa10.98□□□□□ -0.65
USP54-201ENST00000339859 METTL7BQ6UX53 244 aa10.98□□□□□ -0.65
USP54-201ENST00000339859 EXOC4Q96A65 974 aa10.98□□□□□ -0.65
USP54-201ENST00000339859 RNF208Q9H0X6 261 aa10.98□□□□□ -0.65
USP54-201ENST00000339859 C4BP0C0L5 1744 aa10.98□□□□□ -0.65
USP54-201ENST00000339859 SYNJ2BP-COX16A0A087WUM0 186 aa10.98□□□□□ -0.65
USP54-201ENST00000339859 UPP2O95045 317 aa10.98□□□□□ -0.65
USP54-201ENST00000339859 CPB1P15086 417 aa10.98□□□□□ -0.65
USP54-201ENST00000339859 SEC23AQ15436 765 aa10.98□□□□□ -0.65
USP54-201ENST00000339859 FAM149B1Q96BN6 582 aa10.98□□□□□ -0.65
USP54-201ENST00000339859 RBAKQ9NYW8 714 aaPredicted RBP10.98□□□□□ -0.65
USP54-201ENST00000339859 COX16Q9P0S2 106 aa10.98□□□□□ -0.65
USP54-201ENST00000339859 CD4P01730 458 aa10.98□□□□□ -0.65
USP54-201ENST00000339859 KRT10P13645 584 aa10.98□□□□□ -0.65
USP54-201ENST00000339859 ABCB4P21439 1286 aa10.98□□□□□ -0.65
USP54-201ENST00000339859 LEKR1Q6ZMV7 388 aa10.98□□□□□ -0.65
USP54-201ENST00000339859 ZNF771Q7L3S4 317 aaPredicted RBP10.98□□□□□ -0.65
USP54-201ENST00000339859 NKX2-3Q8TAU0 364 aa10.98□□□□□ -0.65
USP54-201ENST00000339859 HVCN1Q96D96 273 aa10.98□□□□□ -0.65
USP54-201ENST00000339859 NR2E3Q9Y5X4 410 aa10.98□□□□□ -0.65
USP54-201ENST00000339859 CA12O43570 354 aa10.98□□□□□ -0.65
USP54-201ENST00000339859 RPS6KA1Q15418 735 aa10.98□□□□□ -0.65
USP54-201ENST00000339859 PPP1R14CQ8TAE6 165 aa10.98□□□□□ -0.65
USP54-201ENST00000339859 CCSER1Q9C0I3 900 aa10.98□□□□□ -0.65
USP54-201ENST00000339859 TOMM70O94826 608 aa10.98□□□□□ -0.65
USP54-201ENST00000339859 VAMP7P51809 220 aa10.98□□□□□ -0.65
USP54-201ENST00000339859 FSTL1Q12841 308 aa10.98□□□□□ -0.65
USP54-201ENST00000339859 ARL13BQ3SXY8 428 aa10.98□□□□□ -0.65
USP54-201ENST00000339859 CCDC89Q8N998 374 aa10.98□□□□□ -0.65
USP54-201ENST00000339859 RBSNQ9H1K0 784 aa10.98□□□□□ -0.65
USP54-201ENST00000339859 AGO4Q9HCK5 861 aaKnown RBP10.98□□□□□ -0.65
USP54-201ENST00000339859 LCMT1Q9UIC8 334 aa10.98□□□□□ -0.65
USP54-201ENST00000339859 DLG5Q8TDM6 1919 aa10.98□□□□□ -0.65
USP54-201ENST00000339859 SPDYE5A6NIY4 337 aa10.97□□□□□ -0.65
USP54-201ENST00000339859 NFKBIEO00221 500 aa10.97□□□□□ -0.65
USP54-201ENST00000339859 MAP2K5Q13163 448 aa10.97□□□□□ -0.65
USP54-201ENST00000339859 TLK2Q86UE8 772 aa10.97□□□□□ -0.65
USP54-201ENST00000339859 ENOX1Q8TC92 643 aaKnown RBP10.97□□□□□ -0.65
USP54-201ENST00000339859 TRIM62Q9BVG3 475 aa10.97□□□□□ -0.65
USP54-201ENST00000339859 TMEM63CQ9P1W3 806 aa10.97□□□□□ -0.65
USP54-201ENST00000339859 A0A1W2PRG0 241 aa10.97□□□□□ -0.65
USP54-201ENST00000339859 NFIBO00712 420 aa10.97□□□□□ -0.65
USP54-201ENST00000339859 TERF1P54274 439 aa10.97□□□□□ -0.65
USP54-201ENST00000339859 OR6B2Q6IFH4 312 aa10.97□□□□□ -0.65
USP54-201ENST00000339859 MRPL47Q9HD33 250 aaKnown RBP10.97□□□□□ -0.65
USP54-201ENST00000339859 CYP26B1Q9NR63 512 aa10.97□□□□□ -0.65
USP54-201ENST00000339859 TMEM39AQ9NV64 488 aa10.97□□□□□ -0.65
Retrieved 100 of 20,778 RNA–protein pairs in 13.8 ms