RNA–Protein interactions for RNA: ENST00000339394.6

SDC3-202, Transcript of syndecan 3, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene SDC3, Length 1,580 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SDC3-202ENST00000339394 PRPF31Q8WWY3 499 aaKnown RBP24.59■■□□□ 1.53
SDC3-202ENST00000339394 PSPC1Q8WXF1 523 aaKnown RBP24.59■■□□□ 1.53
SDC3-202ENST00000339394 MAP7D2Q96T17 732 aa24.59■■□□□ 1.53
SDC3-202ENST00000339394 C7orf25Q9BPX7 421 aa24.59■■□□□ 1.53
SDC3-202ENST00000339394 VTNP04004 478 aa24.58■■□□□ 1.52
SDC3-202ENST00000339394 CLTBP09497 229 aa24.58■■□□□ 1.52
SDC3-202ENST00000339394 CASP1P29466 404 aa24.58■■□□□ 1.52
SDC3-202ENST00000339394 THPOP40225 353 aa24.58■■□□□ 1.52
SDC3-202ENST00000339394 TRIM71Q2Q1W2 868 aaKnown RBP24.58■■□□□ 1.52
SDC3-202ENST00000339394 RSPH3Q86UC2 560 aa24.58■■□□□ 1.52
SDC3-202ENST00000339394 NME8Q8N427 588 aa24.58■■□□□ 1.52
SDC3-202ENST00000339394 DNAJC19Q96DA6 116 aa24.58■■□□□ 1.52
SDC3-202ENST00000339394 HTATIP2Q9BUP3 242 aa24.58■■□□□ 1.52
SDC3-202ENST00000339394 POLR3FQ9H1D9 316 aaPredicted RBP24.58■■□□□ 1.52
SDC3-202ENST00000339394 BLZF1Q9H2G9 400 aa24.58■■□□□ 1.52
SDC3-202ENST00000339394 SFI1A8K8P3 1242 aa24.57■■□□□ 1.52
SDC3-202ENST00000339394 RSPH10B2B2RC85 870 aa24.57■■□□□ 1.52
SDC3-202ENST00000339394 RSPH10BP0C881 870 aa24.57■■□□□ 1.52
SDC3-202ENST00000339394 TMEM62Q0P6H9 643 aa24.57■■□□□ 1.52
SDC3-202ENST00000339394 MAPK7Q13164 816 aa24.57■■□□□ 1.52
SDC3-202ENST00000339394 CUL4BQ13620 913 aa24.57■■□□□ 1.52
SDC3-202ENST00000339394 RHPN2Q8IUC4 686 aa24.57■■□□□ 1.52
SDC3-202ENST00000339394 KIFAP3Q92845 792 aa24.57■■□□□ 1.52
SDC3-202ENST00000339394 CCDC34Q96HJ3 373 aa24.57■■□□□ 1.52
SDC3-202ENST00000339394 DRC1Q96MC2 740 aa24.57■■□□□ 1.52
SDC3-202ENST00000339394 TMEM39AQ9NV64 488 aa24.57■■□□□ 1.52
SDC3-202ENST00000339394 ODF2LQ9ULJ1 636 aa24.57■■□□□ 1.52
SDC3-202ENST00000339394 RPLP2P05387 115 aaKnown RBP24.56■■□□□ 1.52
SDC3-202ENST00000339394 MDM2Q00987 491 aaPredicted RBP24.56■■□□□ 1.52
SDC3-202ENST00000339394 CNNM4Q6P4Q7 775 aa24.56■■□□□ 1.52
SDC3-202ENST00000339394 KSR1Q8IVT5 923 aa24.56■■□□□ 1.52
SDC3-202ENST00000339394 CAGE1Q8TC20 777 aa24.56■■□□□ 1.52
SDC3-202ENST00000339394 ASAP3Q8TDY4 903 aa24.56■■□□□ 1.52
SDC3-202ENST00000339394 TBX21Q9UL17 535 aa24.56■■□□□ 1.52
SDC3-202ENST00000339394 COL4A3BPQ9Y5P4 624 aa24.56■■□□□ 1.52
SDC3-202ENST00000339394 MBD3O95983 291 aa24.55■■□□□ 1.52
SDC3-202ENST00000339394 CKBP12277 381 aa24.55■■□□□ 1.52
SDC3-202ENST00000339394 GLRA2P23416 452 aa24.55■■□□□ 1.52
SDC3-202ENST00000339394 LAMTOR4Q0VGL1 99 aa24.55■■□□□ 1.52
SDC3-202ENST00000339394 MXD4Q14582 209 aaPredicted RBP24.55■■□□□ 1.52
SDC3-202ENST00000339394 MYL1P05976 194 aa24.54■■□□□ 1.52
SDC3-202ENST00000339394 PRR29P0C7W0 189 aa24.54■■□□□ 1.52
SDC3-202ENST00000339394 NLRP11P59045 1033 aaKnown RBP24.54■■□□□ 1.52
SDC3-202ENST00000339394 RBL2Q08999 1139 aa24.54■■□□□ 1.52
SDC3-202ENST00000339394 BFSP2Q13515 415 aa24.54■■□□□ 1.52
SDC3-202ENST00000339394 ELOA2Q8IYF1 753 aaPredicted RBP24.54■■□□□ 1.52
SDC3-202ENST00000339394 ZNF668Q96K58 619 aaPredicted RBP24.54■■□□□ 1.52
SDC3-202ENST00000339394 PPP1R16BQ96T49 567 aa24.54■■□□□ 1.52
SDC3-202ENST00000339394 NOC4LQ9BVI4 516 aaKnown RBP24.54■■□□□ 1.52
SDC3-202ENST00000339394 HIPK3Q9H422 1215 aa24.54■■□□□ 1.52
SDC3-202ENST00000339394 ASAP2O43150 1006 aa24.54■■□□□ 1.52
SDC3-202ENST00000339394 GTPBP6O43824 516 aaPredicted RBP24.54■■□□□ 1.52
SDC3-202ENST00000339394 CAND2O75155 1236 aa24.54■■□□□ 1.52
SDC3-202ENST00000339394 TBCAO75347 108 aaKnown RBP24.54■■□□□ 1.52
SDC3-202ENST00000339394 GPR32O75388 356 aa24.54■■□□□ 1.52
SDC3-202ENST00000339394 CTSHP09668 335 aa24.54■■□□□ 1.52
SDC3-202ENST00000339394 IDEP14735 1019 aa24.54■■□□□ 1.52
SDC3-202ENST00000339394 GPC3P51654 580 aa24.54■■□□□ 1.52
SDC3-202ENST00000339394 ZNF131P52739 623 aa24.54■■□□□ 1.52
SDC3-202ENST00000339394 ASIC1P78348 528 aa24.54■■□□□ 1.52
SDC3-202ENST00000339394 CDC42EP1Q00587 391 aa24.54■■□□□ 1.52
SDC3-202ENST00000339394 POSTNQ15063 836 aa24.54■■□□□ 1.52
SDC3-202ENST00000339394 KIZQ2M2Z5 673 aa24.54■■□□□ 1.52
SDC3-202ENST00000339394 ZNF618Q5T7W0 954 aa24.54■■□□□ 1.52
SDC3-202ENST00000339394 CCDC155Q8N6L0 562 aa24.54■■□□□ 1.52
SDC3-202ENST00000339394 BSNDQ8WZ55 320 aa24.54■■□□□ 1.52
SDC3-202ENST00000339394 ZHX3Q9H4I2 956 aa24.54■■□□□ 1.52
SDC3-202ENST00000339394 PARVGQ9HBI0 331 aa24.54■■□□□ 1.52
SDC3-202ENST00000339394 PRDM5Q9NQX1 630 aaPredicted RBP24.54■■□□□ 1.52
SDC3-202ENST00000339394 KAT6AQ92794 2004 aa24.53■■□□□ 1.52
SDC3-202ENST00000339394 TRIM43BA6NCK2 446 aa24.53■■□□□ 1.52
SDC3-202ENST00000339394 PITPNM1O00562 1244 aa24.53■■□□□ 1.52
SDC3-202ENST00000339394 FAM13AO94988 1023 aa24.53■■□□□ 1.52
SDC3-202ENST00000339394 SRGAP2CP0DJJ0 459 aa24.53■■□□□ 1.52
SDC3-202ENST00000339394 PTMSP20962 102 aa24.53■■□□□ 1.52
SDC3-202ENST00000339394 MRPS6P82932 125 aaKnown RBP24.53■■□□□ 1.52
SDC3-202ENST00000339394 DPYDQ12882 1025 aa24.53■■□□□ 1.52
SDC3-202ENST00000339394 PNOCQ13519 176 aa24.53■■□□□ 1.52
SDC3-202ENST00000339394 NFKBIBQ15653 356 aa24.53■■□□□ 1.52
SDC3-202ENST00000339394 TRIM43Q96BQ3 446 aaPredicted RBP24.53■■□□□ 1.52
SDC3-202ENST00000339394 NLRP4Q96MN2 994 aa24.53■■□□□ 1.52
SDC3-202ENST00000339394 ADAMTS10Q9H324 1103 aa24.53■■□□□ 1.52
SDC3-202ENST00000339394 C17orf75Q9HAS0 396 aa24.53■■□□□ 1.52
SDC3-202ENST00000339394 LARSQ9P2J5 1176 aaKnown RBP24.53■■□□□ 1.52
SDC3-202ENST00000339394 HOOK1Q9UJC3 728 aaKnown RBP24.53■■□□□ 1.52
SDC3-202ENST00000339394 GINS2Q9Y248 185 aa24.53■■□□□ 1.52
SDC3-202ENST00000339394 ARID2Q68CP9 1835 aa24.53■■□□□ 1.52
SDC3-202ENST00000339394 UMODL1Q5DID0 1318 aa24.52■■□□□ 1.52
SDC3-202ENST00000339394 TRIP12Q14669 1992 aaPredicted RBP24.52■■□□□ 1.52
SDC3-202ENST00000339394 FRMD3A2A2Y4 597 aa24.52■■□□□ 1.52
SDC3-202ENST00000339394 CHRNA1P02708 482 aa24.52■■□□□ 1.52
SDC3-202ENST00000339394 PLS3P13797 630 aa24.52■■□□□ 1.52
SDC3-202ENST00000339394 CAPSQ13938 189 aa24.52■■□□□ 1.52
SDC3-202ENST00000339394 CAMK4Q16566 473 aa24.52■■□□□ 1.52
SDC3-202ENST00000339394 ZNF710Q8N1W2 664 aa24.52■■□□□ 1.52
SDC3-202ENST00000339394 MYCT1Q8N699 235 aa24.52■■□□□ 1.52
SDC3-202ENST00000339394 RNF149Q8NC42 400 aa24.52■■□□□ 1.52
SDC3-202ENST00000339394 NLRP7Q8WX94 980 aa24.52■■□□□ 1.52
SDC3-202ENST00000339394 IFT74Q96LB3 600 aa24.52■■□□□ 1.52
SDC3-202ENST00000339394 CDHR5Q9HBB8 845 aa24.52■■□□□ 1.52
Retrieved 100 of 20,778 RNA–protein pairs in 23.7 ms