RNA–Protein interactions for RNA: ENST00000328923.7

SHMT2-201, Transcript of serine hydroxymethyltransferase 2, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene SHMT2, Length 2,537 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT2-201ENST00000328923 SNX27Q96L92 541 aa12.79□□□□□ -0.36
SHMT2-201ENST00000328923 SLC4A9Q96Q91 983 aa12.79□□□□□ -0.36
SHMT2-201ENST00000328923 NSRP1Q9H0G5 558 aaKnown RBP12.79□□□□□ -0.36
SHMT2-201ENST00000328923 KCNJ18B7U540 433 aa12.79□□□□□ -0.36
SHMT2-201ENST00000328923 VHLP40337 213 aa12.79□□□□□ -0.36
SHMT2-201ENST00000328923 USP11P51784 963 aa12.79□□□□□ -0.36
SHMT2-201ENST00000328923 GEMIN4P57678 1058 aaKnown RBP12.79□□□□□ -0.36
SHMT2-201ENST00000328923 RNASE9P60153 205 aaKnown RBP12.79□□□□□ -0.36
SHMT2-201ENST00000328923 TCIRG1Q13488 830 aa12.79□□□□□ -0.36
SHMT2-201ENST00000328923 MAP7Q14244 749 aa12.79□□□□□ -0.36
SHMT2-201ENST00000328923 KCNJ12Q14500 433 aa12.79□□□□□ -0.36
SHMT2-201ENST00000328923 CFAP221Q4G0U5 840 aa12.79□□□□□ -0.36
SHMT2-201ENST00000328923 NAT14Q8WUY8 206 aa12.79□□□□□ -0.36
SHMT2-201ENST00000328923 LRRC45Q96CN5 670 aa12.79□□□□□ -0.36
SHMT2-201ENST00000328923 IQCDQ96DY2 449 aa12.79□□□□□ -0.36
SHMT2-201ENST00000328923 ISCA1Q9BUE6 129 aa12.79□□□□□ -0.36
SHMT2-201ENST00000328923 OSBPL10Q9BXB5 764 aa12.79□□□□□ -0.36
SHMT2-201ENST00000328923 MIS12Q9H081 205 aa12.79□□□□□ -0.36
SHMT2-201ENST00000328923 THAP9Q9H5L6 903 aa12.79□□□□□ -0.36
SHMT2-201ENST00000328923 CAPN11Q9UMQ6 739 aa12.79□□□□□ -0.36
SHMT2-201ENST00000328923 DEXIO95424 95 aa12.78□□□□□ -0.36
SHMT2-201ENST00000328923 LYNP07948 512 aa12.78□□□□□ -0.36
SHMT2-201ENST00000328923 GSTT2P0CG29 244 aa12.78□□□□□ -0.36
SHMT2-201ENST00000328923 GSTT2BP0CG30 244 aa12.78□□□□□ -0.36
SHMT2-201ENST00000328923 VAV1P15498 845 aa12.78□□□□□ -0.36
SHMT2-201ENST00000328923 TRIM21P19474 475 aaKnown RBP12.78□□□□□ -0.36
SHMT2-201ENST00000328923 RXRAP19793 462 aa12.78□□□□□ -0.36
SHMT2-201ENST00000328923 PAK1Q13153 545 aa12.78□□□□□ -0.36
SHMT2-201ENST00000328923 CERKLQ49MI3 558 aaPredicted RBP12.78□□□□□ -0.36
SHMT2-201ENST00000328923 DAB2IPQ5VWQ8 1189 aa12.78□□□□□ -0.36
SHMT2-201ENST00000328923 USP49Q70CQ1 688 aa12.78□□□□□ -0.36
SHMT2-201ENST00000328923 FAM133AQ8N9E0 248 aa12.78□□□□□ -0.36
SHMT2-201ENST00000328923 NRG4Q8WWG1 115 aa12.78□□□□□ -0.36
SHMT2-201ENST00000328923 DYDC2Q96IM9 177 aa12.78□□□□□ -0.36
SHMT2-201ENST00000328923 LBHD1Q9BQE6 289 aaPredicted RBP12.78□□□□□ -0.36
SHMT2-201ENST00000328923 TLR10Q9BXR5 811 aa12.78□□□□□ -0.36
SHMT2-201ENST00000328923 TUT1Q9H6E5 874 aaKnown RBP12.78□□□□□ -0.36
SHMT2-201ENST00000328923 SH2D4AQ9H788 454 aa12.78□□□□□ -0.36
SHMT2-201ENST00000328923 INTS9Q9NV88 658 aaKnown RBP12.78□□□□□ -0.36
SHMT2-201ENST00000328923 HESX1Q9UBX0 185 aa12.78□□□□□ -0.36
SHMT2-201ENST00000328923 SLC12A7Q9Y666 1083 aa12.78□□□□□ -0.36
SHMT2-201ENST00000328923 A0A087X0B3 334 aa12.78□□□□□ -0.36
SHMT2-201ENST00000328923 AFPP02771 609 aaKnown RBP12.78□□□□□ -0.36
SHMT2-201ENST00000328923 NAT2P11245 290 aa12.78□□□□□ -0.36
SHMT2-201ENST00000328923 MYCLP1P12525 358 aaPredicted RBP12.78□□□□□ -0.36
SHMT2-201ENST00000328923 HALP42357 657 aa12.78□□□□□ -0.36
SHMT2-201ENST00000328923 CDK17Q00537 523 aa12.78□□□□□ -0.36
SHMT2-201ENST00000328923 RCN1Q15293 331 aa12.78□□□□□ -0.36
SHMT2-201ENST00000328923 LRRC24Q50LG9 513 aa12.78□□□□□ -0.36
SHMT2-201ENST00000328923 TMEM67Q5HYA8 995 aa12.78□□□□□ -0.36
SHMT2-201ENST00000328923 KLC3Q6P597 504 aa12.78□□□□□ -0.36
SHMT2-201ENST00000328923 KIF6Q6ZMV9 814 aa12.78□□□□□ -0.36
SHMT2-201ENST00000328923 KRT27Q7Z3Y8 459 aa12.78□□□□□ -0.36
SHMT2-201ENST00000328923 KLHL7Q8IXQ5 586 aa12.78□□□□□ -0.36
SHMT2-201ENST00000328923 NMD3Q96D46 503 aaKnown RBP12.78□□□□□ -0.36
SHMT2-201ENST00000328923 TMEM237Q96Q45 408 aa12.78□□□□□ -0.36
SHMT2-201ENST00000328923 CENPKQ9BS16 269 aa12.78□□□□□ -0.36
SHMT2-201ENST00000328923 RXFP1Q9HBX9 757 aa12.78□□□□□ -0.36
SHMT2-201ENST00000328923 FGFR1OP2Q9NVK5 253 aa12.78□□□□□ -0.36
SHMT2-201ENST00000328923 RABL2AQ9UBK7 228 aaPredicted RBP12.78□□□□□ -0.36
SHMT2-201ENST00000328923 TRIM75PA6NK02 468 aa12.77□□□□□ -0.37
SHMT2-201ENST00000328923 RGL2O15211 777 aa12.77□□□□□ -0.37
SHMT2-201ENST00000328923 SPTLC1O15269 473 aa12.77□□□□□ -0.37
SHMT2-201ENST00000328923 UNC5CO95185 931 aa12.77□□□□□ -0.37
SHMT2-201ENST00000328923 ASMTLO95671 621 aa12.77□□□□□ -0.37
SHMT2-201ENST00000328923 ALDH2P05091 517 aa12.77□□□□□ -0.37
SHMT2-201ENST00000328923 CYP19A1P11511 503 aaPredicted RBP12.77□□□□□ -0.37
SHMT2-201ENST00000328923 CYP4A11Q02928 519 aa12.77□□□□□ -0.37
SHMT2-201ENST00000328923 ALX1Q15699 326 aa12.77□□□□□ -0.37
SHMT2-201ENST00000328923 SNX30Q5VWJ9 437 aa12.77□□□□□ -0.37
SHMT2-201ENST00000328923 LRRC8CQ8TDW0 803 aa12.77□□□□□ -0.37
SHMT2-201ENST00000328923 TUBGCP5Q96RT8 1024 aa12.77□□□□□ -0.37
SHMT2-201ENST00000328923 ISCUQ9H1K1 167 aa12.77□□□□□ -0.37
SHMT2-201ENST00000328923 METTL5Q9NRN9 209 aaKnown RBP12.77□□□□□ -0.37
SHMT2-201ENST00000328923 AGPAT5Q9NUQ2 364 aa12.77□□□□□ -0.37
SHMT2-201ENST00000328923 STK24Q9Y6E0 443 aa12.77□□□□□ -0.37
SHMT2-201ENST00000328923 AKAP11Q9UKA4 1901 aa12.77□□□□□ -0.37
SHMT2-201ENST00000328923 LGALS16A8MUM7 142 aa12.77□□□□□ -0.37
SHMT2-201ENST00000328923 B4E1Z4 1266 aa12.77□□□□□ -0.37
SHMT2-201ENST00000328923 SUN1O94901 812 aa12.77□□□□□ -0.37
SHMT2-201ENST00000328923 PORP16435 677 aaPredicted RBP12.77□□□□□ -0.37
SHMT2-201ENST00000328923 AFMP43652 599 aa12.77□□□□□ -0.37
SHMT2-201ENST00000328923 NSUN2Q08J23 767 aaKnown RBP eCLIP12.77□□□□□ -0.37
SHMT2-201ENST00000328923 TRIM28Q13263 835 aaKnown RBP12.77□□□□□ -0.37
SHMT2-201ENST00000328923 PACS1Q6VY07 963 aa12.77□□□□□ -0.37
SHMT2-201ENST00000328923 ANKLE1Q8NAG6 615 aa12.77□□□□□ -0.37
SHMT2-201ENST00000328923 UHMK1Q8TAS1 419 aaKnown RBP12.77□□□□□ -0.37
SHMT2-201ENST00000328923 SMC6Q96SB8 1091 aa12.77□□□□□ -0.37
SHMT2-201ENST00000328923 DPH5Q9H2P9 285 aa12.77□□□□□ -0.37
SHMT2-201ENST00000328923 FAM114A2Q9NRY5 505 aa12.77□□□□□ -0.37
SHMT2-201ENST00000328923 SLTMQ9NWH9 1034 aaKnown RBP eCLIP12.77□□□□□ -0.37
SHMT2-201ENST00000328923 TUBA8Q9NY65 449 aaPredicted RBP12.77□□□□□ -0.37
SHMT2-201ENST00000328923 KIAA1522Q9P206 1035 aaPredicted RBP12.77□□□□□ -0.37
SHMT2-201ENST00000328923 MYH6P13533 1939 aa12.76□□□□□ -0.37
SHMT2-201ENST00000328923 H7C1D1 291 aa12.76□□□□□ -0.37
SHMT2-201ENST00000328923 ONECUT3O60422 494 aaPredicted RBP12.76□□□□□ -0.37
SHMT2-201ENST00000328923 PLCG2P16885 1265 aa12.76□□□□□ -0.37
SHMT2-201ENST00000328923 ADD2P35612 726 aa12.76□□□□□ -0.37
SHMT2-201ENST00000328923 MMP13P45452 471 aa12.76□□□□□ -0.37
SHMT2-201ENST00000328923 FAM98CQ17RN3 349 aaKnown RBP12.76□□□□□ -0.37
Retrieved 100 of 20,778 RNA–protein pairs in 14.2 ms