RNA–Protein interactions for RNA: ENST00000318006.9

VPS39-201, Transcript of VPS39, HOPS complex subunit, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene VPS39, Length 4,844 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS39-201ENST00000318006 CACNB3P54284 484 aa12.33□□□□□ -0.44
VPS39-201ENST00000318006 ANO5Q75V66 913 aa12.33□□□□□ -0.44
VPS39-201ENST00000318006 MIGA2Q7L4E1 593 aa12.33□□□□□ -0.44
VPS39-201ENST00000318006 DGCR8Q8WYQ5 773 aaKnown RBP eCLIP12.33□□□□□ -0.44
VPS39-201ENST00000318006 TGS1Q96RS0 853 aaKnown RBP12.33□□□□□ -0.44
VPS39-201ENST00000318006 TMEM206Q9H813 350 aa12.33□□□□□ -0.44
VPS39-201ENST00000318006 PARVGQ9HBI0 331 aa12.33□□□□□ -0.44
VPS39-201ENST00000318006 ANKFY1Q9P2R3 1169 aa12.33□□□□□ -0.44
VPS39-201ENST00000318006 GDAQ9Y2T3 454 aa12.33□□□□□ -0.44
VPS39-201ENST00000318006 ZNF711Q9Y462 761 aa12.33□□□□□ -0.44
VPS39-201ENST00000318006 ZNF609O15014 1411 aa12.33□□□□□ -0.44
VPS39-201ENST00000318006 hCG_2014768A0A024R1R8 64 aa12.33□□□□□ -0.44
VPS39-201ENST00000318006 ZBTB5O15062 677 aa12.33□□□□□ -0.44
VPS39-201ENST00000318006 CFLARO15519 480 aa12.33□□□□□ -0.44
VPS39-201ENST00000318006 LRRN2O75325 713 aa12.33□□□□□ -0.44
VPS39-201ENST00000318006 CSF1RP07333 972 aa12.33□□□□□ -0.44
VPS39-201ENST00000318006 ACTN1P12814 892 aa12.33□□□□□ -0.44
VPS39-201ENST00000318006 BRAFP15056 766 aa12.33□□□□□ -0.44
VPS39-201ENST00000318006 YARSP54577 528 aaKnown RBP12.33□□□□□ -0.44
VPS39-201ENST00000318006 KCTD2Q14681 263 aa12.33□□□□□ -0.44
VPS39-201ENST00000318006 LLGL1Q15334 1064 aa12.33□□□□□ -0.44
VPS39-201ENST00000318006 SRRM1Q8IYB3 904 aaKnown RBP12.33□□□□□ -0.44
VPS39-201ENST00000318006 HACE1Q8IYU2 909 aa12.33□□□□□ -0.44
VPS39-201ENST00000318006 UPF3AQ9H1J1 476 aaKnown RBP12.33□□□□□ -0.44
VPS39-201ENST00000318006 HPCAL4Q9UM19 191 aa12.33□□□□□ -0.44
VPS39-201ENST00000318006 TEX33O43247 280 aa12.32□□□□□ -0.44
VPS39-201ENST00000318006 ORC4O43929 436 aa12.32□□□□□ -0.44
VPS39-201ENST00000318006 HOXA13P31271 388 aaPredicted RBP12.32□□□□□ -0.44
VPS39-201ENST00000318006 ECE1P42892 770 aa12.32□□□□□ -0.44
VPS39-201ENST00000318006 CUL4BQ13620 913 aa12.32□□□□□ -0.44
VPS39-201ENST00000318006 GRM4Q14833 912 aa12.32□□□□□ -0.44
VPS39-201ENST00000318006 WDR75Q8IWA0 830 aaKnown RBP12.32□□□□□ -0.44
VPS39-201ENST00000318006 NSMCE1Q8WV22 266 aa12.32□□□□□ -0.44
VPS39-201ENST00000318006 CPVLQ9H3G5 476 aa12.32□□□□□ -0.44
VPS39-201ENST00000318006 PAIP2BQ9ULR5 123 aaKnown RBP12.32□□□□□ -0.44
VPS39-201ENST00000318006 NEURL4Q96JN8 1562 aa12.32□□□□□ -0.44
VPS39-201ENST00000318006 MCF2P10911 925 aa12.32□□□□□ -0.44
VPS39-201ENST00000318006 SAT1P21673 171 aa12.32□□□□□ -0.44
VPS39-201ENST00000318006 PPP1R2P3Q6NXS1 205 aa12.32□□□□□ -0.44
VPS39-201ENST00000318006 NYAP1Q6ZVC0 841 aa12.32□□□□□ -0.44
VPS39-201ENST00000318006 RFX6Q8HWS3 928 aa12.32□□□□□ -0.44
VPS39-201ENST00000318006 HNRNPLLQ8WVV9 542 aaKnown RBP12.32□□□□□ -0.44
VPS39-201ENST00000318006 HDAC11Q96DB2 347 aa12.32□□□□□ -0.44
VPS39-201ENST00000318006 CEP95Q96GE4 821 aa12.32□□□□□ -0.44
VPS39-201ENST00000318006 DNAJC5Q9H3Z4 198 aa12.32□□□□□ -0.44
VPS39-201ENST00000318006 DNAJC17Q9NVM6 304 aaKnown RBP12.32□□□□□ -0.44
VPS39-201ENST00000318006 CEP72Q9P209 647 aa12.32□□□□□ -0.44
VPS39-201ENST00000318006 ORC6Q9Y5N6 252 aa12.32□□□□□ -0.44
VPS39-201ENST00000318006 AFF2P51816 1311 aa12.32□□□□□ -0.44
VPS39-201ENST00000318006 REREQ9P2R6 1566 aa12.32□□□□□ -0.44
VPS39-201ENST00000318006 CCND1P24385 295 aa12.32□□□□□ -0.44
VPS39-201ENST00000318006 TMOD1P28289 359 aa12.32□□□□□ -0.44
VPS39-201ENST00000318006 CIAPIN1Q6FI81 312 aa12.32□□□□□ -0.44
VPS39-201ENST00000318006 PDZD4Q76G19 769 aaPredicted RBP12.32□□□□□ -0.44
VPS39-201ENST00000318006 ZNF34Q8IZ26 560 aa12.32□□□□□ -0.44
VPS39-201ENST00000318006 PYROXD1Q8WU10 500 aa12.32□□□□□ -0.44
VPS39-201ENST00000318006 CEP170P1Q96L14 293 aa12.32□□□□□ -0.44
VPS39-201ENST00000318006 KMT5AQ9NQR1 393 aa12.32□□□□□ -0.44
VPS39-201ENST00000318006 FBXL5Q9UKA1 691 aa12.32□□□□□ -0.44
VPS39-201ENST00000318006 DIP2AQ14689 1571 aa12.32□□□□□ -0.44
VPS39-201ENST00000318006 ASNSP08243 561 aa12.32□□□□□ -0.44
VPS39-201ENST00000318006 CCNI2Q6ZMN8 369 aaPredicted RBP12.32□□□□□ -0.44
VPS39-201ENST00000318006 PDIK1LQ8N165 341 aa12.32□□□□□ -0.44
VPS39-201ENST00000318006 PROCA1Q8NCQ7 364 aaPredicted RBP12.32□□□□□ -0.44
VPS39-201ENST00000318006 SLITRK6Q9H5Y7 841 aa12.32□□□□□ -0.44
VPS39-201ENST00000318006 KRT1P04264 644 aa12.31□□□□□ -0.44
VPS39-201ENST00000318006 PLA2G4AP47712 749 aa12.31□□□□□ -0.44
VPS39-201ENST00000318006 CAV1Q03135 178 aa12.31□□□□□ -0.44
VPS39-201ENST00000318006 MTF1Q14872 753 aa12.31□□□□□ -0.44
VPS39-201ENST00000318006 CRYMQ14894 314 aa12.31□□□□□ -0.44
VPS39-201ENST00000318006 MRPL47Q9HD33 250 aaKnown RBP12.31□□□□□ -0.44
VPS39-201ENST00000318006 ADD3Q9UEY8 706 aaKnown RBP12.31□□□□□ -0.44
VPS39-201ENST00000318006 TTC26A0AVF1 554 aa12.31□□□□□ -0.44
VPS39-201ENST00000318006 PIK3CAP42336 1068 aa12.31□□□□□ -0.44
VPS39-201ENST00000318006 BBS9Q3SYG4 887 aa12.31□□□□□ -0.44
VPS39-201ENST00000318006 PPP4R3CPQ6ZMV5 832 aa12.31□□□□□ -0.44
VPS39-201ENST00000318006 UNC13DQ70J99 1090 aa12.31□□□□□ -0.44
VPS39-201ENST00000318006 SH2D3CQ8N5H7 860 aa12.31□□□□□ -0.44
VPS39-201ENST00000318006 FAM161BQ96MY7 647 aa12.31□□□□□ -0.44
VPS39-201ENST00000318006 TTC1Q99614 292 aa12.31□□□□□ -0.44
VPS39-201ENST00000318006 IRX2Q9BZI1 471 aaPredicted RBP12.31□□□□□ -0.44
VPS39-201ENST00000318006 BHMT2Q9H2M3 363 aa12.31□□□□□ -0.44
VPS39-201ENST00000318006 ARL2BPQ9Y2Y0 163 aa12.31□□□□□ -0.44
VPS39-201ENST00000318006 LRRC53A6NM62 1247 aa12.31□□□□□ -0.44
VPS39-201ENST00000318006 GNGT2O14610 69 aa12.31□□□□□ -0.44
VPS39-201ENST00000318006 TECPR2O15040 1411 aa12.31□□□□□ -0.44
VPS39-201ENST00000318006 MCF2LO15068 1137 aa12.31□□□□□ -0.44
VPS39-201ENST00000318006 TTI1O43156 1089 aa12.31□□□□□ -0.44
VPS39-201ENST00000318006 NCK2O43639 380 aa12.31□□□□□ -0.44
VPS39-201ENST00000318006 C21orf2O43822 256 aa12.31□□□□□ -0.44
VPS39-201ENST00000318006 LSP1P33241 339 aa12.31□□□□□ -0.44
VPS39-201ENST00000318006 BASP1P80723 227 aaKnown RBP12.31□□□□□ -0.44
VPS39-201ENST00000318006 TMPRSS15P98073 1019 aa12.31□□□□□ -0.44
VPS39-201ENST00000318006 NFIXQ14938 502 aa12.31□□□□□ -0.44
VPS39-201ENST00000318006 PDIA6Q15084 440 aa12.31□□□□□ -0.44
VPS39-201ENST00000318006 CCDC117Q8IWD4 279 aaPredicted RBP12.31□□□□□ -0.44
VPS39-201ENST00000318006 TTC17Q96AE7 1141 aa12.31□□□□□ -0.44
VPS39-201ENST00000318006 MMS19Q96T76 1030 aa12.31□□□□□ -0.44
VPS39-201ENST00000318006 BUD13Q9BRD0 619 aaKnown RBP eCLIP12.31□□□□□ -0.442e-6■■■■□ 19.5
VPS39-201ENST00000318006 LRRC1Q9BTT6 524 aa12.31□□□□□ -0.44
Retrieved 100 of 20,778 RNA–protein pairs in 8.6 ms