RNA–Protein interactions for RNA: ENST00000311487.9

HMGA1-201, Transcript of high mobility group AT-hook 1, humanhuman

APPRIS P4 TSL 1 (best) BASIC

Gene HMGA1, Length 1,920 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGA1-201ENST00000311487 PRPF31Q8WWY3 499 aaKnown RBP20.15■□□□□ 0.82
HMGA1-201ENST00000311487 BSNDQ8WZ55 320 aa20.15■□□□□ 0.82
HMGA1-201ENST00000311487 KIFC3Q9BVG8 833 aa20.15■□□□□ 0.82
HMGA1-201ENST00000311487 SUCLA2Q9P2R7 463 aaPredicted RBP20.15■□□□□ 0.82
HMGA1-201ENST00000311487 MBLAC1A4D2B0 266 aaPredicted RBP20.14■□□□□ 0.81
HMGA1-201ENST00000311487 SRGAP2CP0DJJ0 459 aa20.14■□□□□ 0.81
HMGA1-201ENST00000311487 ASIC1P78348 528 aa20.14■□□□□ 0.81
HMGA1-201ENST00000311487 ASAP3Q8TDY4 903 aa20.14■□□□□ 0.81
HMGA1-201ENST00000311487 DHX38Q92620 1227 aaKnown RBP20.14■□□□□ 0.81
HMGA1-201ENST00000311487 TRIM9Q9C026 710 aa20.14■□□□□ 0.81
HMGA1-201ENST00000311487 CDHR5Q9HBB8 845 aa20.14■□□□□ 0.81
HMGA1-201ENST00000311487 COL1A2P08123 1366 aa20.14■□□□□ 0.81
HMGA1-201ENST00000311487 THPOP40225 353 aa20.14■□□□□ 0.81
HMGA1-201ENST00000311487 RFC5P40937 340 aa20.14■□□□□ 0.81
HMGA1-201ENST00000311487 MDM2Q00987 491 aaPredicted RBP20.14■□□□□ 0.81
HMGA1-201ENST00000311487 POSTNQ15063 836 aa20.14■□□□□ 0.81
HMGA1-201ENST00000311487 KIZQ2M2Z5 673 aa20.14■□□□□ 0.81
HMGA1-201ENST00000311487 SH3RF1Q7Z6J0 888 aa20.14■□□□□ 0.81
HMGA1-201ENST00000311487 SESTD1Q86VW0 696 aa20.14■□□□□ 0.81
HMGA1-201ENST00000311487 RETREG2Q8NC44 543 aa20.14■□□□□ 0.81
HMGA1-201ENST00000311487 DNAJC19Q96DA6 116 aa20.14■□□□□ 0.81
HMGA1-201ENST00000311487 NLRP4Q96MN2 994 aa20.14■□□□□ 0.81
HMGA1-201ENST00000311487 TNMDQ9H2S6 317 aa20.14■□□□□ 0.81
HMGA1-201ENST00000311487 CUEDC2Q9H467 287 aa20.14■□□□□ 0.81
HMGA1-201ENST00000311487 PCDHA2Q9Y5H9 948 aa20.14■□□□□ 0.81
HMGA1-201ENST00000311487 IGKV6-21A0A0C4DH24 114 aa20.13■□□□□ 0.81
HMGA1-201ENST00000311487 FAAP100Q0VG06 881 aa20.13■□□□□ 0.81
HMGA1-201ENST00000311487 MAPK7Q13164 816 aa20.13■□□□□ 0.81
HMGA1-201ENST00000311487 SERINC5Q86VE9 423 aa20.13■□□□□ 0.81
HMGA1-201ENST00000311487 PYM1Q9BRP8 204 aaKnown RBP20.13■□□□□ 0.81
HMGA1-201ENST00000311487 OSBPL7Q9BZF2 842 aa20.13■□□□□ 0.81
HMGA1-201ENST00000311487 PRDM5Q9NQX1 630 aaPredicted RBP20.13■□□□□ 0.81
HMGA1-201ENST00000311487 UMODL1Q5DID0 1318 aa20.13■□□□□ 0.81
HMGA1-201ENST00000311487 MAGEB2O15479 319 aa20.12■□□□□ 0.81
HMGA1-201ENST00000311487 MYCT1Q8N699 235 aa20.12■□□□□ 0.81
HMGA1-201ENST00000311487 PPP1R12CQ9BZL4 782 aa20.12■□□□□ 0.81
HMGA1-201ENST00000311487 BIN1O00499 593 aa20.12■□□□□ 0.81
HMGA1-201ENST00000311487 GLRA2P23416 452 aa20.12■□□□□ 0.81
HMGA1-201ENST00000311487 PEX3P56589 373 aa20.12■□□□□ 0.81
HMGA1-201ENST00000311487 NLRP11P59045 1033 aaKnown RBP20.12■□□□□ 0.81
HMGA1-201ENST00000311487 AMPD3Q01432 767 aa20.12■□□□□ 0.81
HMGA1-201ENST00000311487 LAMTOR4Q0VGL1 99 aa20.12■□□□□ 0.81
HMGA1-201ENST00000311487 LINC01465Q8N7H1 131 aa20.12■□□□□ 0.81
HMGA1-201ENST00000311487 USP25Q9UHP3 1055 aa20.12■□□□□ 0.81
HMGA1-201ENST00000311487 USP20Q9Y2K6 914 aa20.12■□□□□ 0.81
HMGA1-201ENST00000311487 DCDC2CA8MYV0 355 aa20.11■□□□□ 0.81
HMGA1-201ENST00000311487 FAM13AO94988 1023 aa20.11■□□□□ 0.81
HMGA1-201ENST00000311487 CD4P01730 458 aa20.11■□□□□ 0.81
HMGA1-201ENST00000311487 TMOD1P28289 359 aa20.11■□□□□ 0.81
HMGA1-201ENST00000311487 DNM2P50570 870 aa20.11■□□□□ 0.81
HMGA1-201ENST00000311487 KCTD17Q8N5Z5 321 aa20.11■□□□□ 0.81
HMGA1-201ENST00000311487 GLIS3Q8NEA6 775 aa20.11■□□□□ 0.81
HMGA1-201ENST00000311487 SCLT1Q96NL6 688 aa20.11■□□□□ 0.81
HMGA1-201ENST00000311487 C7orf25Q9BPX7 421 aa20.11■□□□□ 0.81
HMGA1-201ENST00000311487 FGFBP2Q9BYJ0 223 aa20.11■□□□□ 0.81
HMGA1-201ENST00000311487 PANK4Q9NVE7 773 aa20.11■□□□□ 0.81
HMGA1-201ENST00000311487 SMIM35A0A1B0GVV1 85 aa20.1■□□□□ 0.81
HMGA1-201ENST00000311487 CCDC169A6NNP5 214 aa20.1■□□□□ 0.81
HMGA1-201ENST00000311487 TBCAO75347 108 aaKnown RBP20.1■□□□□ 0.81
HMGA1-201ENST00000311487 GUCY2CP25092 1073 aa20.1■□□□□ 0.81
HMGA1-201ENST00000311487 ARL2P36404 184 aa20.1■□□□□ 0.81
HMGA1-201ENST00000311487 DPYDQ12882 1025 aa20.1■□□□□ 0.81
HMGA1-201ENST00000311487 SNX17Q15036 470 aa20.1■□□□□ 0.81
HMGA1-201ENST00000311487 ANKRD33Q7Z3H0 272 aa20.1■□□□□ 0.81
HMGA1-201ENST00000311487 SFR1Q86XK3 245 aa20.1■□□□□ 0.81
HMGA1-201ENST00000311487 RNF149Q8NC42 400 aa20.1■□□□□ 0.81
HMGA1-201ENST00000311487 MCPH1Q8NEM0 835 aa20.1■□□□□ 0.81
HMGA1-201ENST00000311487 NLRP7Q8WX94 980 aa20.1■□□□□ 0.81
HMGA1-201ENST00000311487 PSPC1Q8WXF1 523 aaKnown RBP20.1■□□□□ 0.81
HMGA1-201ENST00000311487 TIGD1Q96MW7 591 aa20.1■□□□□ 0.81
HMGA1-201ENST00000311487 MAP7D2Q96T17 732 aa20.1■□□□□ 0.81
HMGA1-201ENST00000311487 NUP62CLQ9H1M0 184 aa20.1■□□□□ 0.81
HMGA1-201ENST00000311487 CLSTN2Q9H4D0 955 aa20.1■□□□□ 0.81
HMGA1-201ENST00000311487 PCDHA5Q9Y5H7 936 aa20.1■□□□□ 0.81
HMGA1-201ENST00000311487 A0A087WZ62 844 aa20.1■□□□□ 0.81
HMGA1-201ENST00000311487 LRRIQ4A6NIV6 560 aa20.1■□□□□ 0.81
HMGA1-201ENST00000311487 GTPBP6O43824 516 aaPredicted RBP20.1■□□□□ 0.81
HMGA1-201ENST00000311487 FGFR4P22455 802 aa20.1■□□□□ 0.81
HMGA1-201ENST00000311487 PTPN11Q06124 597 aaPredicted RBP20.1■□□□□ 0.81
HMGA1-201ENST00000311487 HERC4Q5GLZ8 1057 aaPredicted RBP20.1■□□□□ 0.81
HMGA1-201ENST00000311487 ODR4Q5SWX8 454 aa20.1■□□□□ 0.81
HMGA1-201ENST00000311487 ZNF618Q5T7W0 954 aa20.1■□□□□ 0.81
HMGA1-201ENST00000311487 SYAP1Q96A49 352 aaPredicted RBP20.1■□□□□ 0.81
HMGA1-201ENST00000311487 OSMRQ99650 979 aa20.1■□□□□ 0.81
HMGA1-201ENST00000311487 FDXACB1Q9BRP7 624 aaPredicted RBP20.1■□□□□ 0.81
HMGA1-201ENST00000311487 COL4A3BPQ9Y5P4 624 aa20.1■□□□□ 0.81
HMGA1-201ENST00000311487 SLC16A4O15374 487 aa20.09■□□□□ 0.81
HMGA1-201ENST00000311487 ITGB8P26012 769 aa20.09■□□□□ 0.81
HMGA1-201ENST00000311487 NMT1P30419 496 aaKnown RBP20.09■□□□□ 0.81
HMGA1-201ENST00000311487 CCL23P55773 120 aa20.09■□□□□ 0.81
HMGA1-201ENST00000311487 CAPSQ13938 189 aa20.09■□□□□ 0.81
HMGA1-201ENST00000311487 KMT5BQ4FZB7 885 aa20.09■□□□□ 0.81
HMGA1-201ENST00000311487 IER5Q5VY09 327 aa20.09■□□□□ 0.81
HMGA1-201ENST00000311487 MAGEF1Q9HAY2 307 aa20.09■□□□□ 0.81
HMGA1-201ENST00000311487 TMEM39AQ9NV64 488 aa20.09■□□□□ 0.81
HMGA1-201ENST00000311487 LAMA2P24043 3122 aaKnown RBP20.08■□□□□ 0.81
HMGA1-201ENST00000311487 ADGRA3Q8IWK6 1321 aa20.08■□□□□ 0.81
HMGA1-201ENST00000311487 SYCE3A1L190 88 aa20.08■□□□□ 0.81
HMGA1-201ENST00000311487 KLRC4O43908 158 aa20.08■□□□□ 0.81
HMGA1-201ENST00000311487 CHRNA1P02708 482 aa20.08■□□□□ 0.81
Retrieved 100 of 20,778 RNA–protein pairs in 19.6 ms