RNA–Protein interactions for RNA: ENST00000297261.6

SHH-201, Transcript of sonic hedgehog, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene SHH, Length 4,454 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHH-201ENST00000297261 DDX42Q86XP3 938 aaKnown RBP eCLIP16.55■□□□□ 0.24
SHH-201ENST00000297261 RPUSD2Q8IZ73 545 aaKnown RBP16.55■□□□□ 0.24
SHH-201ENST00000297261 CYFIP2Q96F07 1278 aa16.55■□□□□ 0.24
SHH-201ENST00000297261 PPP1R9AQ9ULJ8 1098 aa16.55■□□□□ 0.24
SHH-201ENST00000297261 ATRNO75882 1429 aa16.55■□□□□ 0.24
SHH-201ENST00000297261 MEIS1O00470 390 aa16.55■□□□□ 0.24
SHH-201ENST00000297261 SART1O43290 800 aaKnown RBP16.55■□□□□ 0.24
SHH-201ENST00000297261 HOXA13P31271 388 aaPredicted RBP16.55■□□□□ 0.24
SHH-201ENST00000297261 EVX2Q03828 476 aa16.55■□□□□ 0.24
SHH-201ENST00000297261 STRN3Q13033 797 aa16.55■□□□□ 0.24
SHH-201ENST00000297261 ANKRD40Q6AI12 368 aa16.55■□□□□ 0.24
SHH-201ENST00000297261 SRRM1Q8IYB3 904 aaKnown RBP16.55■□□□□ 0.24
SHH-201ENST00000297261 SLFN12Q8IYM2 578 aa16.55■□□□□ 0.24
SHH-201ENST00000297261 DCAF4Q8WV16 495 aa16.55■□□□□ 0.24
SHH-201ENST00000297261 VCX3AQ9NNX9 186 aa16.55■□□□□ 0.24
SHH-201ENST00000297261 ANAPC5Q9UJX4 755 aa16.55■□□□□ 0.24
SHH-201ENST00000297261 PCDHA6Q9UN73 950 aa16.55■□□□□ 0.24
SHH-201ENST00000297261 PCDHA8Q9Y5H6 950 aa16.55■□□□□ 0.24
SHH-201ENST00000297261 SERPINB6P35237 376 aa16.55■□□□□ 0.24
SHH-201ENST00000297261 SMTNP53814 917 aa16.55■□□□□ 0.24
SHH-201ENST00000297261 FAM186BQ8IYM0 893 aa16.55■□□□□ 0.24
SHH-201ENST00000297261 PDHBP11177 359 aa16.54■□□□□ 0.24
SHH-201ENST00000297261 LGSNQ5TDP6 509 aa16.54■□□□□ 0.24
SHH-201ENST00000297261 ILDR1Q86SU0 546 aaPredicted RBP16.54■□□□□ 0.24
SHH-201ENST00000297261 SEC16BQ96JE7 1060 aa16.54■□□□□ 0.24
SHH-201ENST00000297261 DPEP1P16444 411 aa16.54■□□□□ 0.24
SHH-201ENST00000297261 RFC1P35251 1148 aaPredicted RBP16.54■□□□□ 0.24
SHH-201ENST00000297261 DPYDQ12882 1025 aa16.54■□□□□ 0.24
SHH-201ENST00000297261 ZNF653Q96CK0 615 aa16.54■□□□□ 0.24
SHH-201ENST00000297261 CYTH2Q99418 400 aa16.54■□□□□ 0.24
SHH-201ENST00000297261 OSBPL1AQ9BXW6 950 aa16.54■□□□□ 0.24
SHH-201ENST00000297261 EHD4Q9H223 541 aa16.54■□□□□ 0.24
SHH-201ENST00000297261 STRCQ7RTU9 1775 aa16.54■□□□□ 0.24
SHH-201ENST00000297261 ITIH6Q6UXX5 1313 aa16.54■□□□□ 0.24
SHH-201ENST00000297261 FAM107AO95990 144 aa16.54■□□□□ 0.24
SHH-201ENST00000297261 GCFC2P16383 781 aaKnown RBP16.54■□□□□ 0.24
SHH-201ENST00000297261 QRICH1Q2TAL8 776 aa16.54■□□□□ 0.24
SHH-201ENST00000297261 CASC4Q6P4E1 433 aa16.54■□□□□ 0.24
SHH-201ENST00000297261 RNF168Q8IYW5 571 aaPredicted RBP16.54■□□□□ 0.24
SHH-201ENST00000297261 ANO3Q9BYT9 981 aa16.54■□□□□ 0.24
SHH-201ENST00000297261 MAD2L2Q9UI95 211 aa16.54■□□□□ 0.24
SHH-201ENST00000297261 BAZ2BQ9UIF8 2168 aaKnown RBP16.54■□□□□ 0.24
SHH-201ENST00000297261 SLC20A2Q08357 652 aa16.53■□□□□ 0.24
SHH-201ENST00000297261 SH2D4BQ5SQS7 431 aa16.53■□□□□ 0.24
SHH-201ENST00000297261 SGSM3Q96HU1 749 aa16.53■□□□□ 0.24
SHH-201ENST00000297261 YY1AP1Q9H869 796 aa16.53■□□□□ 0.24
SHH-201ENST00000297261 ECT2Q9H8V3 914 aa16.53■□□□□ 0.24
SHH-201ENST00000297261 ZNF543Q08ER8 600 aa16.53■□□□□ 0.24
SHH-201ENST00000297261 PTPAQ15257 358 aa16.53■□□□□ 0.24
SHH-201ENST00000297261 PTGISQ16647 500 aa16.53■□□□□ 0.24
SHH-201ENST00000297261 LACRTQ9GZZ8 138 aa16.53■□□□□ 0.24
SHH-201ENST00000297261 CEP72Q9P209 647 aa16.53■□□□□ 0.24
SHH-201ENST00000297261 COMMD10Q9Y6G5 202 aa16.53■□□□□ 0.24
SHH-201ENST00000297261 EXOC1LA0A1B0GW35 172 aa16.53■□□□□ 0.24
SHH-201ENST00000297261 POTEMA6NI47 508 aa16.53■□□□□ 0.24
SHH-201ENST00000297261 CASQ2O14958 399 aaPredicted RBP16.53■□□□□ 0.24
SHH-201ENST00000297261 SETSIPP0DME0 302 aa16.53■□□□□ 0.24
SHH-201ENST00000297261 CD19P15391 556 aa16.53■□□□□ 0.24
SHH-201ENST00000297261 ARL1P40616 181 aaPredicted RBP16.53■□□□□ 0.24
SHH-201ENST00000297261 PMS2P54278 862 aa16.53■□□□□ 0.24
SHH-201ENST00000297261 TBC1D10BQ4KMP7 808 aaPredicted RBP16.53■□□□□ 0.24
SHH-201ENST00000297261 C10orf76Q5T2E6 689 aa16.53■□□□□ 0.24
SHH-201ENST00000297261 ABTB1Q969K4 478 aaPredicted RBP16.53■□□□□ 0.24
SHH-201ENST00000297261 DDX27Q96GQ7 796 aaKnown RBP16.53■□□□□ 0.24
SHH-201ENST00000297261 KLK7P49862 253 aa16.53■□□□□ 0.24
SHH-201ENST00000297261 DRP2Q13474 957 aa16.53■□□□□ 0.24
SHH-201ENST00000297261 PPP2R5DQ14738 602 aa16.53■□□□□ 0.24
SHH-201ENST00000297261 CRY2Q49AN0 593 aa16.53■□□□□ 0.24
SHH-201ENST00000297261 RAD23BP54727 409 aa16.52■□□□□ 0.24
SHH-201ENST00000297261 RCSD1Q6JBY9 416 aa16.52■□□□□ 0.24
SHH-201ENST00000297261 IL17RBQ9NRM6 502 aa16.52■□□□□ 0.24
SHH-201ENST00000297261 PNMA2Q9UL42 364 aa16.52■□□□□ 0.24
SHH-201ENST00000297261 NOC2LQ9Y3T9 749 aaKnown RBP16.52■□□□□ 0.24
SHH-201ENST00000297261 FAM205AQ6ZU69 1335 aa16.52■□□□□ 0.24
SHH-201ENST00000297261 MAPK13O15264 365 aa16.52■□□□□ 0.24
SHH-201ENST00000297261 ODR4Q5SWX8 454 aa16.52■□□□□ 0.24
SHH-201ENST00000297261 TRAPPC11Q7Z392 1133 aa16.52■□□□□ 0.24
SHH-201ENST00000297261 ADSSL1Q8N142 457 aa16.52■□□□□ 0.24
SHH-201ENST00000297261 CEP120Q8N960 986 aa16.52■□□□□ 0.24
SHH-201ENST00000297261 MYCBPAPQ8TBZ2 947 aa16.52■□□□□ 0.24
SHH-201ENST00000297261 ZNF341Q9BYN7 854 aa16.52■□□□□ 0.24
SHH-201ENST00000297261 STXBP3O00186 592 aa16.52■□□□□ 0.23
SHH-201ENST00000297261 PRPF6O94906 941 aaKnown RBP16.52■□□□□ 0.23
SHH-201ENST00000297261 BRAFP15056 766 aa16.52■□□□□ 0.23
SHH-201ENST00000297261 BSPRYQ5W0U4 402 aa16.52■□□□□ 0.23
SHH-201ENST00000297261 CYB5D1Q6P9G0 228 aa16.52■□□□□ 0.23
SHH-201ENST00000297261 UNC13DQ70J99 1090 aa16.52■□□□□ 0.23
SHH-201ENST00000297261 RSAD2Q8WXG1 361 aa16.52■□□□□ 0.23
SHH-201ENST00000297261 BUD13Q9BRD0 619 aaKnown RBP eCLIP16.52■□□□□ 0.233e-6■■■■■ 30.2
SHH-201ENST00000297261 AS3MTQ9HBK9 375 aa16.52■□□□□ 0.23
SHH-201ENST00000297261 ZNRF3Q9ULT6 936 aa16.52■□□□□ 0.23
SHH-201ENST00000297261 MYCNP04198 464 aaPredicted RBP16.51■□□□□ 0.23
SHH-201ENST00000297261 CD44P16070 742 aaKnown RBP16.51■□□□□ 0.23
SHH-201ENST00000297261 HSPA6P17066 643 aa16.51■□□□□ 0.23
SHH-201ENST00000297261 TNNI1P19237 187 aa16.51■□□□□ 0.23
SHH-201ENST00000297261 PHBP35232 272 aa16.51■□□□□ 0.23
SHH-201ENST00000297261 TOB1P50616 345 aaPredicted RBP16.51■□□□□ 0.23
SHH-201ENST00000297261 PKN1Q16512 942 aa16.51■□□□□ 0.23
SHH-201ENST00000297261 MAP3K14Q99558 947 aa16.51■□□□□ 0.23
SHH-201ENST00000297261 CFAP73A6NFT4 308 aa16.51■□□□□ 0.23
Retrieved 100 of 20,778 RNA–protein pairs in 63.1 ms