RNA–Protein interactions for RNA: ENST00000291074.9

VPS53-201, Transcript of VPS53, GARP complex subunit, humanhuman

TSL 1 (best) BASIC

Gene VPS53, Length 2,656 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS53-201ENST00000291074 TBC1D10BQ4KMP7 808 aaPredicted RBP21.89■■□□□ 1.1
VPS53-201ENST00000291074 FAM71BQ8TC56 605 aa21.89■■□□□ 1.1
VPS53-201ENST00000291074 MKNK1Q9BUB5 465 aa21.89■■□□□ 1.1
VPS53-201ENST00000291074 AGO4Q9HCK5 861 aaKnown RBP21.89■■□□□ 1.1
VPS53-201ENST00000291074 FRMD4BQ9Y2L6 1034 aa21.89■■□□□ 1.1
VPS53-201ENST00000291074 DDX3XO00571 662 aaKnown RBP eCLIP21.89■■□□□ 1.09
VPS53-201ENST00000291074 STXBP4Q6ZWJ1 553 aa21.89■■□□□ 1.09
VPS53-201ENST00000291074 SYTL5Q8TDW5 730 aaPredicted RBP21.89■■□□□ 1.09
VPS53-201ENST00000291074 INPP4AQ96PE3 977 aaPredicted RBP21.89■■□□□ 1.09
VPS53-201ENST00000291074 TAAR1Q96RJ0 339 aa21.89■■□□□ 1.09
VPS53-201ENST00000291074 NENFQ9UMX5 172 aa21.89■■□□□ 1.09
VPS53-201ENST00000291074 EVI5O60447 810 aa21.88■■□□□ 1.09
VPS53-201ENST00000291074 EXOC3O60645 756 aa21.88■■□□□ 1.09
VPS53-201ENST00000291074 FLOT1O75955 427 aa21.88■■□□□ 1.09
VPS53-201ENST00000291074 BCRP11274 1271 aa21.88■■□□□ 1.09
VPS53-201ENST00000291074 SND1Q7KZF4 910 aaKnown RBP eCLIP21.88■■□□□ 1.09
VPS53-201ENST00000291074 STRA6Q9BX79 667 aa21.88■■□□□ 1.09
VPS53-201ENST00000291074 PCIF1Q9H4Z3 704 aa21.88■■□□□ 1.09
VPS53-201ENST00000291074 STIM2Q9P246 746 aa21.88■■□□□ 1.09
VPS53-201ENST00000291074 PPP1R3FQ6ZSY5 799 aaPredicted RBP21.88■■□□□ 1.09
VPS53-201ENST00000291074 OLIG1Q8TAK6 271 aa21.88■■□□□ 1.09
VPS53-201ENST00000291074 U2AF1L4Q8WU68 220 aaKnown RBP21.88■■□□□ 1.09
VPS53-201ENST00000291074 EXOC4Q96A65 974 aa21.88■■□□□ 1.09
VPS53-201ENST00000291074 DNAJC12Q9UKB3 198 aa21.88■■□□□ 1.09
VPS53-201ENST00000291074 UBIAD1Q9Y5Z9 338 aa21.88■■□□□ 1.09
VPS53-201ENST00000291074 ZSCAN5CA6NGD5 496 aaPredicted RBP21.87■■□□□ 1.09
VPS53-201ENST00000291074 F8VZ95 297 aa21.87■■□□□ 1.09
VPS53-201ENST00000291074 P4HBP07237 508 aaKnown RBP21.87■■□□□ 1.09
VPS53-201ENST00000291074 AARSP49588 968 aaKnown RBP eCLIP21.87■■□□□ 1.09
VPS53-201ENST00000291074 MTMR1Q13613 665 aa21.87■■□□□ 1.09
VPS53-201ENST00000291074 UGCGQ16739 394 aa21.87■■□□□ 1.09
VPS53-201ENST00000291074 C10orf76Q5T2E6 689 aa21.87■■□□□ 1.09
VPS53-201ENST00000291074 LNX1Q8TBB1 728 aaPredicted RBP21.87■■□□□ 1.09
VPS53-201ENST00000291074 SLC38A10Q9HBR0 1119 aa21.87■■□□□ 1.09
VPS53-201ENST00000291074 BTNL10A8MVZ5 291 aa21.87■■□□□ 1.09
VPS53-201ENST00000291074 STAT1P42224 750 aa21.87■■□□□ 1.09
VPS53-201ENST00000291074 RPS6P62753 249 aaKnown RBP21.87■■□□□ 1.09
VPS53-201ENST00000291074 MTMR2Q13614 643 aa21.87■■□□□ 1.09
VPS53-201ENST00000291074 DRAP1Q14919 205 aaPredicted RBP21.87■■□□□ 1.09
VPS53-201ENST00000291074 NEK9Q8TD19 979 aa21.87■■□□□ 1.09
VPS53-201ENST00000291074 BBXQ8WY36 941 aaPredicted RBP21.87■■□□□ 1.09
VPS53-201ENST00000291074 INTS2Q9H0H0 1204 aaKnown RBP21.87■■□□□ 1.09
VPS53-201ENST00000291074 MED4Q9NPJ6 270 aa21.87■■□□□ 1.09
VPS53-201ENST00000291074 RNF40O75150 1001 aa21.86■■□□□ 1.09
VPS53-201ENST00000291074 MYCLP12524 364 aaPredicted RBP21.86■■□□□ 1.09
VPS53-201ENST00000291074 GGCXP38435 758 aa21.86■■□□□ 1.09
VPS53-201ENST00000291074 RARRES1P49788 294 aa21.86■■□□□ 1.09
VPS53-201ENST00000291074 DLG4P78352 724 aa21.86■■□□□ 1.09
VPS53-201ENST00000291074 PCNX4Q63HM2 1172 aa21.86■■□□□ 1.09
VPS53-201ENST00000291074 MCF2L2Q86YR7 1114 aa21.86■■□□□ 1.09
VPS53-201ENST00000291074 WNK4Q96J92 1243 aa21.86■■□□□ 1.09
VPS53-201ENST00000291074 KIAA1683Q9H0B3 1180 aa21.86■■□□□ 1.09
VPS53-201ENST00000291074 KCNK3O14649 394 aa21.86■■□□□ 1.09
VPS53-201ENST00000291074 FERP16591 822 aa21.86■■□□□ 1.09
VPS53-201ENST00000291074 VCAM1P19320 739 aa21.86■■□□□ 1.09
VPS53-201ENST00000291074 SOX5P35711 763 aa21.86■■□□□ 1.09
VPS53-201ENST00000291074 MYL7Q01449 175 aa21.86■■□□□ 1.09
VPS53-201ENST00000291074 BFSP1Q12934 665 aa21.86■■□□□ 1.09
VPS53-201ENST00000291074 TNIP1Q15025 636 aa21.86■■□□□ 1.09
VPS53-201ENST00000291074 LRRC57Q8N9N7 239 aa21.86■■□□□ 1.09
VPS53-201ENST00000291074 ZSWIM2Q8NEG5 633 aa21.86■■□□□ 1.09
VPS53-201ENST00000291074 LPAR1Q92633 364 aa21.86■■□□□ 1.09
VPS53-201ENST00000291074 GPR88Q9GZN0 384 aa21.86■■□□□ 1.09
VPS53-201ENST00000291074 VPS33BQ9H267 617 aa21.86■■□□□ 1.09
VPS53-201ENST00000291074 TMCO5BA8MYB1 307 aa21.85■■□□□ 1.09
VPS53-201ENST00000291074 AGPSO00116 658 aa21.85■■□□□ 1.09
VPS53-201ENST00000291074 ATP9AO75110 1047 aa21.85■■□□□ 1.09
VPS53-201ENST00000291074 GLI1P08151 1106 aa21.85■■□□□ 1.09
VPS53-201ENST00000291074 GLYCTKQ8IVS8 523 aa21.85■■□□□ 1.09
VPS53-201ENST00000291074 GPRC5CQ9NQ84 441 aa21.85■■□□□ 1.09
VPS53-201ENST00000291074 ESYT3A0FGR9 886 aa21.85■■□□□ 1.09
VPS53-201ENST00000291074 LRRN2O75325 713 aa21.85■■□□□ 1.09
VPS53-201ENST00000291074 H2AFZP0C0S5 128 aa21.85■■□□□ 1.09
VPS53-201ENST00000291074 RPS6KA1Q15418 735 aa21.85■■□□□ 1.09
VPS53-201ENST00000291074 ARHGAP44Q17R89 818 aa21.85■■□□□ 1.09
VPS53-201ENST00000291074 H2AFVQ71UI9 128 aa21.85■■□□□ 1.09
VPS53-201ENST00000291074 SAMD7Q7Z3H4 446 aa21.85■■□□□ 1.09
VPS53-201ENST00000291074 VPS36Q86VN1 386 aa21.85■■□□□ 1.09
VPS53-201ENST00000291074 KRT12Q99456 494 aa21.85■■□□□ 1.09
VPS53-201ENST00000291074 FAM204AQ9H8W3 233 aa21.85■■□□□ 1.09
VPS53-201ENST00000291074 KIF4AO95239 1232 aa21.84■■□□□ 1.09
VPS53-201ENST00000291074 QARSP47897 775 aaKnown RBP21.84■■□□□ 1.09
VPS53-201ENST00000291074 PGM5Q15124 567 aa21.84■■□□□ 1.09
VPS53-201ENST00000291074 TPCN2Q8NHX9 752 aa21.84■■□□□ 1.09
VPS53-201ENST00000291074 JDP2Q8WYK2 163 aa21.84■■□□□ 1.09
VPS53-201ENST00000291074 CBWD1Q9BRT8 395 aa21.84■■□□□ 1.09
VPS53-201ENST00000291074 STK33Q9BYT3 514 aa21.84■■□□□ 1.09
VPS53-201ENST00000291074 TAOK3Q9H2K8 898 aa21.84■■□□□ 1.09
VPS53-201ENST00000291074 PIM2Q9P1W9 311 aa21.84■■□□□ 1.09
VPS53-201ENST00000291074 RNF14Q9UBS8 474 aa21.84■■□□□ 1.09
VPS53-201ENST00000291074 NIPA1Q7RTP0 329 aa21.84■■□□□ 1.09
VPS53-201ENST00000291074 TAF4BQ92750 862 aa21.84■■□□□ 1.09
VPS53-201ENST00000291074 RPAP3Q9H6T3 665 aaPredicted RBP21.84■■□□□ 1.09
VPS53-201ENST00000291074 LARSQ9P2J5 1176 aaKnown RBP21.84■■□□□ 1.09
VPS53-201ENST00000291074 PPP1R9AQ9ULJ8 1098 aa21.84■■□□□ 1.09
VPS53-201ENST00000291074 PPP2R5AQ15172 486 aa21.83■■□□□ 1.09
VPS53-201ENST00000291074 NSMFQ6X4W1 530 aa21.83■■□□□ 1.09
VPS53-201ENST00000291074 GOLGA5Q8TBA6 731 aa21.83■■□□□ 1.09
VPS53-201ENST00000291074 APEX2Q9UBZ4 518 aa21.83■■□□□ 1.09
VPS53-201ENST00000291074 BACH1O14867 736 aa21.83■■□□□ 1.09
Retrieved 100 of 20,778 RNA–protein pairs in 28 ms