RNA–Protein interactions for RNA: ENST00000268049.11

USP3-201, Transcript of ubiquitin specific peptidase 3, humanhuman

TSL 5 BASIC

Gene USP3, Length 5,311 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP3-201ENST00000268049 SCFD1Q8WVM8 642 aa8.42□□□□□ -1.06
USP3-201ENST00000268049 IGFLR1Q9H665 355 aa8.42□□□□□ -1.06
USP3-201ENST00000268049 CYP2D7A0A087X1C5 515 aa8.42□□□□□ -1.06
USP3-201ENST00000268049 CHUKO15111 745 aa8.42□□□□□ -1.06
USP3-201ENST00000268049 EIF3DO15371 548 aaKnown RBP eCLIP8.42□□□□□ -1.06
USP3-201ENST00000268049 ARHGAP6O43182 974 aa8.42□□□□□ -1.06
USP3-201ENST00000268049 SESN3P58005 492 aa8.42□□□□□ -1.06
USP3-201ENST00000268049 TSTA3Q13630 321 aaPredicted RBP8.42□□□□□ -1.06
USP3-201ENST00000268049 BYSLQ13895 437 aaKnown RBP8.42□□□□□ -1.06
USP3-201ENST00000268049 BLIDQ8IZY5 108 aa8.42□□□□□ -1.06
USP3-201ENST00000268049 AKT1S1Q96B36 256 aa8.42□□□□□ -1.06
USP3-201ENST00000268049 TRPC7Q9HCX4 862 aa8.42□□□□□ -1.06
USP3-201ENST00000268049 STK39Q9UEW8 545 aa8.42□□□□□ -1.06
USP3-201ENST00000268049 CTSHP09668 335 aa8.42□□□□□ -1.06
USP3-201ENST00000268049 IFNAR2P48551 515 aa8.42□□□□□ -1.06
USP3-201ENST00000268049 WASHC5Q12768 1159 aa8.42□□□□□ -1.06
USP3-201ENST00000268049 MTMR3Q13615 1198 aa8.42□□□□□ -1.06
USP3-201ENST00000268049 TTBK2Q6IQ55 1244 aa8.42□□□□□ -1.06
USP3-201ENST00000268049 GPBP1Q86WP2 473 aa8.42□□□□□ -1.06
USP3-201ENST00000268049 MAP7D3Q8IWC1 876 aa8.42□□□□□ -1.06
USP3-201ENST00000268049 CXorf56Q9H5V9 222 aa8.42□□□□□ -1.06
USP3-201ENST00000268049 NCOA5Q9HCD5 579 aaKnown RBP8.42□□□□□ -1.06
USP3-201ENST00000268049 PNMA6FA0A0J9YX94 578 aa8.41□□□□□ -1.06
USP3-201ENST00000268049 VWA3AA6NCI4 1184 aa8.41□□□□□ -1.06
USP3-201ENST00000268049 SPECC1L-ADORA2AF8WAN1 911 aa8.41□□□□□ -1.06
USP3-201ENST00000268049 BNIP3LO60238 219 aa8.41□□□□□ -1.06
USP3-201ENST00000268049 APOEP02649 317 aa8.41□□□□□ -1.06
USP3-201ENST00000268049 MYL5Q02045 173 aa8.41□□□□□ -1.06
USP3-201ENST00000268049 TAF11Q15544 211 aa8.41□□□□□ -1.06
USP3-201ENST00000268049 FANCBQ8NB91 859 aa8.41□□□□□ -1.06
USP3-201ENST00000268049 INTS4Q96HW7 963 aaKnown RBP8.41□□□□□ -1.06
USP3-201ENST00000268049 DISC1Q9NRI5 854 aa8.41□□□□□ -1.06
USP3-201ENST00000268049 PIK3C2AO00443 1686 aa8.41□□□□□ -1.06
USP3-201ENST00000268049 RGS12O14924 1447 aa8.41□□□□□ -1.06
USP3-201ENST00000268049 UTYO14607 1347 aa8.41□□□□□ -1.06
USP3-201ENST00000268049 FAM196BA6NMK8 535 aa8.41□□□□□ -1.06
USP3-201ENST00000268049 SYNCRIPO60506 623 aaKnown RBP8.41□□□□□ -1.06
USP3-201ENST00000268049 NDUFS2O75306 463 aa8.41□□□□□ -1.06
USP3-201ENST00000268049 SRGAP2CP0DJJ0 459 aa8.41□□□□□ -1.06
USP3-201ENST00000268049 GRK4P32298 578 aa8.41□□□□□ -1.06
USP3-201ENST00000268049 THPOP40225 353 aa8.41□□□□□ -1.06
USP3-201ENST00000268049 PPATQ06203 517 aa8.41□□□□□ -1.06
USP3-201ENST00000268049 MAIP1Q8WWC4 291 aa8.41□□□□□ -1.06
USP3-201ENST00000268049 PLCB1Q9NQ66 1216 aa8.41□□□□□ -1.06
USP3-201ENST00000268049 PXDNLA1KZ92 1463 aa8.41□□□□□ -1.06
USP3-201ENST00000268049 ABCC12Q96J65 1359 aa8.41□□□□□ -1.06
USP3-201ENST00000268049 HOXA10P31260 410 aaPredicted RBP8.41□□□□□ -1.06
USP3-201ENST00000268049 SF3A3Q12874 501 aaKnown RBP eCLIP8.41□□□□□ -1.061e-7■■■■□ 19.8
USP3-201ENST00000268049 PPIL2Q13356 520 aa8.41□□□□□ -1.06
USP3-201ENST00000268049 INAVAQ3KP66 663 aa8.41□□□□□ -1.06
USP3-201ENST00000268049 MAP3K21Q5TCX8 1036 aa8.41□□□□□ -1.06
USP3-201ENST00000268049 OOSP2Q86WS3 158 aa8.41□□□□□ -1.06
USP3-201ENST00000268049 YIPF3Q9GZM5 350 aa8.41□□□□□ -1.06
USP3-201ENST00000268049 KLHL14Q9P2G3 628 aa8.41□□□□□ -1.06
USP3-201ENST00000268049 KANSL3Q9P2N6 904 aa8.41□□□□□ -1.06
USP3-201ENST00000268049 HMGCRP04035 888 aa8.41□□□□□ -1.06
USP3-201ENST00000268049 SLMAPQ14BN4 828 aa8.41□□□□□ -1.06
USP3-201ENST00000268049 PSMD6Q15008 389 aa8.41□□□□□ -1.06
USP3-201ENST00000268049 CLUL1Q15846 466 aa8.41□□□□□ -1.06
USP3-201ENST00000268049 MEI1Q5TIA1 1274 aa8.41□□□□□ -1.06
USP3-201ENST00000268049 KRT40Q6A162 431 aa8.41□□□□□ -1.06
USP3-201ENST00000268049 SPATA2LQ8IUW3 424 aaPredicted RBP8.41□□□□□ -1.06
USP3-201ENST00000268049 FAM149B1Q96BN6 582 aa8.41□□□□□ -1.06
USP3-201ENST00000268049 NSUN4Q96CB9 384 aaKnown RBP8.41□□□□□ -1.06
USP3-201ENST00000268049 RPGRIP1Q96KN7 1286 aa8.41□□□□□ -1.06
USP3-201ENST00000268049 ACAP3Q96P50 834 aa8.41□□□□□ -1.06
USP3-201ENST00000268049 LLPHQ9BRT6 129 aaKnown RBP8.41□□□□□ -1.06
USP3-201ENST00000268049 TM6SF1Q9BZW5 370 aa8.41□□□□□ -1.06
USP3-201ENST00000268049 hCG_1642624A0A1W2PR95 340 aa8.4□□□□□ -1.06
USP3-201ENST00000268049 GUCY2CP25092 1073 aa8.4□□□□□ -1.06
USP3-201ENST00000268049 HOXA7P31268 230 aaPredicted RBP8.4□□□□□ -1.06
USP3-201ENST00000268049 ATP1A2P50993 1020 aa8.4□□□□□ -1.06
USP3-201ENST00000268049 UBXN1Q04323 297 aa8.4□□□□□ -1.06
USP3-201ENST00000268049 IFT88Q13099 833 aa8.4□□□□□ -1.06
USP3-201ENST00000268049 ACCSLQ4AC99 568 aa8.4□□□□□ -1.06
USP3-201ENST00000268049 DEFB128Q7Z7B8 93 aa8.4□□□□□ -1.06
USP3-201ENST00000268049 FBXO18Q8NFZ0 1043 aa8.4□□□□□ -1.06
USP3-201ENST00000268049 MRPS31Q92665 395 aaKnown RBP8.4□□□□□ -1.06
USP3-201ENST00000268049 SLC38A10Q9HBR0 1119 aa8.4□□□□□ -1.06
USP3-201ENST00000268049 CBX8Q9HC52 389 aa8.4□□□□□ -1.06
USP3-201ENST00000268049 DCP1AQ9NPI6 582 aaPredicted RBP8.4□□□□□ -1.06
USP3-201ENST00000268049 SCINQ9Y6U3 715 aa8.4□□□□□ -1.06
USP3-201ENST00000268049 A0A1B0GVL5 298 aa8.4□□□□□ -1.06
USP3-201ENST00000268049 ACTN4O43707 911 aaKnown RBP8.4□□□□□ -1.06
USP3-201ENST00000268049 PPP1R18Q6NYC8 613 aa8.4□□□□□ -1.06
USP3-201ENST00000268049 ZNF589Q86UQ0 364 aaPredicted RBP8.4□□□□□ -1.06
USP3-201ENST00000268049 LCA5Q86VQ0 697 aa8.4□□□□□ -1.06
USP3-201ENST00000268049 SYMPKQ92797 1274 aaKnown RBP8.4□□□□□ -1.06
USP3-201ENST00000268049 EPSTI1Q96J88 318 aa8.4□□□□□ -1.06
USP3-201ENST00000268049 PPP1R16BQ96T49 567 aa8.4□□□□□ -1.06
USP3-201ENST00000268049 MTRQ99707 1265 aa8.4□□□□□ -1.06
USP3-201ENST00000268049 PIN4Q9Y237 131 aaKnown RBP8.4□□□□□ -1.06
USP3-201ENST00000268049 LAD1O00515 517 aa8.4□□□□□ -1.06
USP3-201ENST00000268049 ASAP2O43150 1006 aa8.4□□□□□ -1.06
USP3-201ENST00000268049 P4HBP07237 508 aaKnown RBP8.4□□□□□ -1.06
USP3-201ENST00000268049 ANKRD20A3Q5VUR7 823 aa8.4□□□□□ -1.06
USP3-201ENST00000268049 FIBCD1Q8N539 461 aa8.4□□□□□ -1.06
USP3-201ENST00000268049 MAP4K1Q92918 833 aa8.4□□□□□ -1.06
USP3-201ENST00000268049 GDAP1L1Q96MZ0 367 aa8.4□□□□□ -1.06
USP3-201ENST00000268049 ACTR5Q9H9F9 607 aaPredicted RBP8.4□□□□□ -1.06
Retrieved 100 of 20,778 RNA–protein pairs in 38.4 ms