RNA–Protein interactions for RNA: ENST00000263694.8

SNRNP40-201, Transcript of small nuclear ribonucleoprotein U5 subunit 40, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene SNRNP40, Length 1,597 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SNRNP40-201ENST00000263694 SPC25Q9HBM1 224 aa10.78□□□□□ -0.68
SNRNP40-201ENST00000263694 CBX8Q9HC52 389 aa10.78□□□□□ -0.68
SNRNP40-201ENST00000263694 RMND1Q9NWS8 449 aa10.78□□□□□ -0.68
SNRNP40-201ENST00000263694 KCND2Q9NZV8 630 aa10.78□□□□□ -0.68
SNRNP40-201ENST00000263694 ZNF215Q9UL58 517 aaPredicted RBP10.78□□□□□ -0.68
SNRNP40-201ENST00000263694 HAS3O00219 553 aa10.77□□□□□ -0.68
SNRNP40-201ENST00000263694 MAFO75444 373 aaPredicted RBP10.77□□□□□ -0.68
SNRNP40-201ENST00000263694 F2P00734 622 aa10.77□□□□□ -0.68
SNRNP40-201ENST00000263694 ASGR1P07306 291 aa10.77□□□□□ -0.68
SNRNP40-201ENST00000263694 GJB1P08034 283 aa10.77□□□□□ -0.68
SNRNP40-201ENST00000263694 SMIM10L2AP0DMW4 78 aa10.77□□□□□ -0.68
SNRNP40-201ENST00000263694 SMIM10L2BP0DMW5 78 aa10.77□□□□□ -0.68
SNRNP40-201ENST00000263694 MYBP10242 640 aa10.77□□□□□ -0.68
SNRNP40-201ENST00000263694 CCL5P13501 91 aa10.77□□□□□ -0.68
SNRNP40-201ENST00000263694 KLRC1P26715 233 aa10.77□□□□□ -0.68
SNRNP40-201ENST00000263694 ZNF165P49910 485 aa10.77□□□□□ -0.68
SNRNP40-201ENST00000263694 ZNF131P52739 623 aa10.77□□□□□ -0.68
SNRNP40-201ENST00000263694 PPFIA1Q13136 1202 aa10.77□□□□□ -0.68
SNRNP40-201ENST00000263694 GSE1Q14687 1217 aa10.77□□□□□ -0.68
SNRNP40-201ENST00000263694 ZC2HC1CQ53FD0 456 aaPredicted RBP10.77□□□□□ -0.68
SNRNP40-201ENST00000263694 FAM26FQ5R3K3 315 aa10.77□□□□□ -0.68
SNRNP40-201ENST00000263694 ODR4Q5SWX8 454 aa10.77□□□□□ -0.68
SNRNP40-201ENST00000263694 MARCH8Q5T0T0 291 aa10.77□□□□□ -0.68
SNRNP40-201ENST00000263694 CCSAPQ6IQ19 270 aaPredicted RBP10.77□□□□□ -0.68
SNRNP40-201ENST00000263694 LUZP1Q86V48 1076 aa10.77□□□□□ -0.68
SNRNP40-201ENST00000263694 ASAP3Q8TDY4 903 aa10.77□□□□□ -0.68
SNRNP40-201ENST00000263694 CCDC47Q96A33 483 aaKnown RBP10.77□□□□□ -0.68
SNRNP40-201ENST00000263694 ZNF668Q96K58 619 aaPredicted RBP10.77□□□□□ -0.68
SNRNP40-201ENST00000263694 FIZ1Q96SL8 496 aa10.77□□□□□ -0.68
SNRNP40-201ENST00000263694 POLR3FQ9H1D9 316 aaPredicted RBP10.77□□□□□ -0.68
SNRNP40-201ENST00000263694 IKZF4Q9H2S9 585 aa10.77□□□□□ -0.68
SNRNP40-201ENST00000263694 PARVGQ9HBI0 331 aa10.77□□□□□ -0.68
SNRNP40-201ENST00000263694 ODF2LQ9ULJ1 636 aa10.77□□□□□ -0.68
SNRNP40-201ENST00000263694 CTNND2Q9UQB3 1225 aa10.77□□□□□ -0.68
SNRNP40-201ENST00000263694 COL4A3BPQ9Y5P4 624 aa10.77□□□□□ -0.68
SNRNP40-201ENST00000263694 PRPF6O94906 941 aaKnown RBP10.77□□□□□ -0.69
SNRNP40-201ENST00000263694 C22orf31O95567 290 aa10.77□□□□□ -0.69
SNRNP40-201ENST00000263694 CLCN3P51790 818 aa10.77□□□□□ -0.69
SNRNP40-201ENST00000263694 PEX3P56589 373 aa10.77□□□□□ -0.69
SNRNP40-201ENST00000263694 KCNA1Q09470 495 aa10.77□□□□□ -0.69
SNRNP40-201ENST00000263694 GRIK4Q16099 956 aa10.77□□□□□ -0.69
SNRNP40-201ENST00000263694 NBPF20Q3BBV1 942 aa10.77□□□□□ -0.69
SNRNP40-201ENST00000263694 ZNF484Q5JVG2 852 aa10.77□□□□□ -0.69
SNRNP40-201ENST00000263694 EFCAB12Q6NXP0 572 aa10.77□□□□□ -0.69
SNRNP40-201ENST00000263694 NELFCDQ8IXH7 590 aa10.77□□□□□ -0.69
SNRNP40-201ENST00000263694 ADSSL1Q8N142 457 aa10.77□□□□□ -0.69
SNRNP40-201ENST00000263694 AOPEPQ8N6M6 819 aa10.77□□□□□ -0.69
SNRNP40-201ENST00000263694 METTL13Q8N6R0 699 aa10.77□□□□□ -0.69
SNRNP40-201ENST00000263694 MLKLQ8NB16 471 aa10.77□□□□□ -0.69
SNRNP40-201ENST00000263694 SLC7A3Q8WY07 619 aa10.77□□□□□ -0.69
SNRNP40-201ENST00000263694 DEFB118Q96PH6 123 aa10.77□□□□□ -0.69
SNRNP40-201ENST00000263694 KIFC3Q9BVG8 833 aa10.77□□□□□ -0.69
SNRNP40-201ENST00000263694 RNF208Q9H0X6 261 aa10.77□□□□□ -0.69
SNRNP40-201ENST00000263694 MRPL44Q9H9J2 332 aaKnown RBP10.77□□□□□ -0.69
SNRNP40-201ENST00000263694 SCN10AQ9Y5Y9 1956 aa10.77□□□□□ -0.69
SNRNP40-201ENST00000263694 IGKV6-21A0A0C4DH24 114 aa10.76□□□□□ -0.69
SNRNP40-201ENST00000263694 TRIM49BA6NDI0 452 aa10.76□□□□□ -0.69
SNRNP40-201ENST00000263694 CCDC169A6NNP5 214 aa10.76□□□□□ -0.69
SNRNP40-201ENST00000263694 SLC16A4O15374 487 aa10.76□□□□□ -0.69
SNRNP40-201ENST00000263694 PLS3P13797 630 aa10.76□□□□□ -0.69
SNRNP40-201ENST00000263694 GAP43P17677 238 aa10.76□□□□□ -0.69
SNRNP40-201ENST00000263694 GLRA2P23416 452 aa10.76□□□□□ -0.69
SNRNP40-201ENST00000263694 HOXD13P35453 343 aa10.76□□□□□ -0.69
SNRNP40-201ENST00000263694 ARL2P36404 184 aa10.76□□□□□ -0.69
SNRNP40-201ENST00000263694 RFC5P40937 340 aa10.76□□□□□ -0.69
SNRNP40-201ENST00000263694 PMS1P54277 932 aaKnown RBP10.76□□□□□ -0.69
SNRNP40-201ENST00000263694 NKX3-2P78367 333 aa10.76□□□□□ -0.69
SNRNP40-201ENST00000263694 PSMD2Q13200 908 aa10.76□□□□□ -0.69
SNRNP40-201ENST00000263694 IQCB1Q15051 598 aa10.76□□□□□ -0.69
SNRNP40-201ENST00000263694 L1TD1Q5T7N2 865 aaKnown RBP10.76□□□□□ -0.69
SNRNP40-201ENST00000263694 MTHFD1LQ6UB35 978 aa10.76□□□□□ -0.69
SNRNP40-201ENST00000263694 DHX40Q8IX18 779 aaKnown RBP10.76□□□□□ -0.69
SNRNP40-201ENST00000263694 MCPH1Q8NEM0 835 aa10.76□□□□□ -0.69
SNRNP40-201ENST00000263694 LMBR1Q8WVP7 490 aa10.76□□□□□ -0.69
SNRNP40-201ENST00000263694 PRPF31Q8WWY3 499 aaKnown RBP10.76□□□□□ -0.69
SNRNP40-201ENST00000263694 VTI1AQ96AJ9 217 aa10.76□□□□□ -0.69
SNRNP40-201ENST00000263694 KIF12Q96FN5 646 aa10.76□□□□□ -0.69
SNRNP40-201ENST00000263694 DRC1Q96MC2 740 aa10.76□□□□□ -0.69
SNRNP40-201ENST00000263694 PPP1R16BQ96T49 567 aa10.76□□□□□ -0.69
SNRNP40-201ENST00000263694 MTG1Q9BT17 334 aaPredicted RBP10.76□□□□□ -0.69
SNRNP40-201ENST00000263694 HDAC6Q9UBN7 1215 aa10.76□□□□□ -0.69
SNRNP40-201ENST00000263694 BRCA2P51587 3418 aa10.76□□□□□ -0.69
SNRNP40-201ENST00000263694 ZEB2O60315 1214 aa10.75□□□□□ -0.69
SNRNP40-201ENST00000263694 KPNA6O60684 536 aa10.75□□□□□ -0.69
SNRNP40-201ENST00000263694 GCNT3O95395 438 aa10.75□□□□□ -0.69
SNRNP40-201ENST00000263694 CST5P28325 142 aaPredicted RBP10.75□□□□□ -0.69
SNRNP40-201ENST00000263694 NPTX2P47972 431 aa10.75□□□□□ -0.69
SNRNP40-201ENST00000263694 ACLYP53396 1101 aa10.75□□□□□ -0.69
SNRNP40-201ENST00000263694 HSP90AA4PQ58FG1 418 aa10.75□□□□□ -0.69
SNRNP40-201ENST00000263694 FBXO46Q6PJ61 603 aaPredicted RBP10.75□□□□□ -0.69
SNRNP40-201ENST00000263694 RUFY4Q6ZNE9 571 aa10.75□□□□□ -0.69
SNRNP40-201ENST00000263694 ZNF720Q7Z2F6 126 aa10.75□□□□□ -0.69
SNRNP40-201ENST00000263694 RNF180Q86T96 592 aa10.75□□□□□ -0.69
SNRNP40-201ENST00000263694 FAM178BQ8IXR5 827 aa10.75□□□□□ -0.69
SNRNP40-201ENST00000263694 SCFD1Q8WVM8 642 aa10.75□□□□□ -0.69
SNRNP40-201ENST00000263694 NELFBQ8WX92 580 aa10.75□□□□□ -0.69
SNRNP40-201ENST00000263694 KIFAP3Q92845 792 aa10.75□□□□□ -0.69
SNRNP40-201ENST00000263694 SEMA6BQ9H3T3 888 aa10.75□□□□□ -0.69
SNRNP40-201ENST00000263694 PAK6Q9NQU5 681 aaPredicted RBP10.75□□□□□ -0.69
SNRNP40-201ENST00000263694 SUCLA2Q9P2R7 463 aaPredicted RBP10.75□□□□□ -0.69
Retrieved 100 of 20,778 RNA–protein pairs in 18.8 ms