RNA–Protein interactions for RNA: ENST00000263073.10

SMG6-201, Transcript of SMG6, nonsense mediated mRNA decay factor, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene SMG6, Length 5,960 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMG6-201ENST00000263073 E2F8A0AVK6 867 aa12.89□□□□□ -0.35
SMG6-201ENST00000263073 POTEB3A0JP26 581 aa12.89□□□□□ -0.35
SMG6-201ENST00000263073 POTECB2RU33 542 aa12.89□□□□□ -0.35
SMG6-201ENST00000263073 PIK3R2O00459 728 aa12.89□□□□□ -0.35
SMG6-201ENST00000263073 POTEBQ6S5H4 581 aa12.89□□□□□ -0.35
SMG6-201ENST00000263073 CCNYL1Q8N7R7 359 aa12.89□□□□□ -0.35
SMG6-201ENST00000263073 PODXLO00592 558 aa12.89□□□□□ -0.35
SMG6-201ENST00000263073 HNRNPCP07910 306 aaKnown RBP eCLIP12.89□□□□□ -0.353e-7■■□□□ 12.3
SMG6-201ENST00000263073 ATP2B4P23634 1241 aa12.89□□□□□ -0.35
SMG6-201ENST00000263073 ARFIP2P53365 341 aa12.89□□□□□ -0.35
SMG6-201ENST00000263073 FMR1Q06787 632 aaKnown RBP eCLIP12.89□□□□□ -0.35
SMG6-201ENST00000263073 COASYQ13057 564 aa12.89□□□□□ -0.35
SMG6-201ENST00000263073 TXNRD1Q16881 649 aa12.89□□□□□ -0.35
SMG6-201ENST00000263073 LONRF1Q17RB8 773 aa12.89□□□□□ -0.35
SMG6-201ENST00000263073 GLE1Q53GS7 698 aaKnown RBP12.89□□□□□ -0.35
SMG6-201ENST00000263073 FAM83BQ5T0W9 1011 aa12.89□□□□□ -0.35
SMG6-201ENST00000263073 CATSPER3Q86XQ3 398 aa12.89□□□□□ -0.35
SMG6-201ENST00000263073 RNF135Q8IUD6 432 aa12.89□□□□□ -0.35
SMG6-201ENST00000263073 ZCWPW1Q9H0M4 648 aa12.89□□□□□ -0.35
SMG6-201ENST00000263073 KDM5CP41229 1560 aa12.89□□□□□ -0.35
SMG6-201ENST00000263073 RPAP1Q9BWH6 1393 aaPredicted RBP12.89□□□□□ -0.35
SMG6-201ENST00000263073 USP17L15C9J2P7 530 aa12.89□□□□□ -0.35
SMG6-201ENST00000263073 USP17L13C9JLJ4 530 aa12.89□□□□□ -0.35
SMG6-201ENST00000263073 USP17L11C9JVI0 530 aa12.89□□□□□ -0.35
SMG6-201ENST00000263073 USP17L18D6R9N7 530 aa12.89□□□□□ -0.35
SMG6-201ENST00000263073 USP17L22D6RA61 530 aa12.89□□□□□ -0.35
SMG6-201ENST00000263073 USP17L17D6RBQ6 530 aa12.89□□□□□ -0.35
SMG6-201ENST00000263073 USP17L19D6RCP7 530 aa12.89□□□□□ -0.35
SMG6-201ENST00000263073 USP17L20D6RJB6 530 aa12.89□□□□□ -0.35
SMG6-201ENST00000263073 FOSP01100 380 aaPredicted RBP12.89□□□□□ -0.35
SMG6-201ENST00000263073 ENO1P06733 434 aaKnown RBP12.89□□□□□ -0.35
SMG6-201ENST00000263073 USP17L24Q0WX57 530 aa12.89□□□□□ -0.35
SMG6-201ENST00000263073 USP17L6PQ6QN14 398 aa12.89□□□□□ -0.35
SMG6-201ENST00000263073 SH3RF3Q8TEJ3 882 aaPredicted RBP12.89□□□□□ -0.35
SMG6-201ENST00000263073 NLRP4Q96MN2 994 aa12.89□□□□□ -0.35
SMG6-201ENST00000263073 ZMAT2Q96NC0 199 aaKnown RBP12.89□□□□□ -0.35
SMG6-201ENST00000263073 UPF3AQ9H1J1 476 aaKnown RBP12.89□□□□□ -0.35
SMG6-201ENST00000263073 ADAM22Q9P0K1 906 aa12.89□□□□□ -0.35
SMG6-201ENST00000263073 LIMA1Q9UHB6 759 aaKnown RBP12.89□□□□□ -0.35
SMG6-201ENST00000263073 KDM6BO15054 1643 aa12.89□□□□□ -0.35
SMG6-201ENST00000263073 ARHGEF5Q12774 1597 aa12.89□□□□□ -0.35
SMG6-201ENST00000263073 FAM196BA6NMK8 535 aa12.89□□□□□ -0.35
SMG6-201ENST00000263073 H0YCG3 227 aa12.89□□□□□ -0.35
SMG6-201ENST00000263073 CCDC188H7C350 402 aa12.89□□□□□ -0.35
SMG6-201ENST00000263073 E2F6O75461 281 aa12.89□□□□□ -0.35
SMG6-201ENST00000263073 LMNAP02545 664 aaKnown RBP12.89□□□□□ -0.35
SMG6-201ENST00000263073 HSPA6P17066 643 aa12.89□□□□□ -0.35
SMG6-201ENST00000263073 PMS1P54277 932 aaKnown RBP12.89□□□□□ -0.35
SMG6-201ENST00000263073 ANO4Q32M45 955 aa12.89□□□□□ -0.35
SMG6-201ENST00000263073 FAM160B1Q5W0V3 765 aa12.89□□□□□ -0.35
SMG6-201ENST00000263073 CCDC137Q6PK04 289 aaKnown RBP12.89□□□□□ -0.35
SMG6-201ENST00000263073 ZNF564Q8TBZ8 553 aaPredicted RBP12.89□□□□□ -0.35
SMG6-201ENST00000263073 MSTO1Q9BUK6 570 aa12.89□□□□□ -0.35
SMG6-201ENST00000263073 MIS12Q9H081 205 aa12.89□□□□□ -0.35
SMG6-201ENST00000263073 CD248Q9HCU0 757 aa12.89□□□□□ -0.35
SMG6-201ENST00000263073 GOLGA8QA0A0J9YX86 632 aa12.88□□□□□ -0.35
SMG6-201ENST00000263073 GOLGA8OA6NCC3 632 aa12.88□□□□□ -0.35
SMG6-201ENST00000263073 GOLGA8NF8WBI6 632 aa12.88□□□□□ -0.35
SMG6-201ENST00000263073 TJP3O95049 919 aa12.88□□□□□ -0.35
SMG6-201ENST00000263073 NR3C1P04150 777 aa12.88□□□□□ -0.35
SMG6-201ENST00000263073 STAT2P52630 851 aa12.88□□□□□ -0.35
SMG6-201ENST00000263073 PSMD2Q13200 908 aa12.88□□□□□ -0.35
SMG6-201ENST00000263073 SYDE2Q5VT97 1194 aa12.88□□□□□ -0.35
SMG6-201ENST00000263073 LONP2Q86WA8 852 aa12.88□□□□□ -0.35
SMG6-201ENST00000263073 WDR75Q8IWA0 830 aaKnown RBP12.88□□□□□ -0.35
SMG6-201ENST00000263073 SLC44A5Q8NCS7 719 aa12.88□□□□□ -0.35
SMG6-201ENST00000263073 SPATA4Q8NEY3 305 aa12.88□□□□□ -0.35
SMG6-201ENST00000263073 ING2Q9H160 280 aa12.88□□□□□ -0.35
SMG6-201ENST00000263073 SUCLA2Q9P2R7 463 aaPredicted RBP12.88□□□□□ -0.35
SMG6-201ENST00000263073 SYCE1LA8MT33 242 aa12.88□□□□□ -0.35
SMG6-201ENST00000263073 CHN1P15882 459 aa12.88□□□□□ -0.35
SMG6-201ENST00000263073 ALDH1B1P30837 517 aa12.88□□□□□ -0.35
SMG6-201ENST00000263073 ARL4CP56559 192 aa12.88□□□□□ -0.35
SMG6-201ENST00000263073 POU5F1BQ06416 359 aa12.88□□□□□ -0.35
SMG6-201ENST00000263073 FAM193BQ96PV7 902 aaPredicted RBP12.88□□□□□ -0.35
SMG6-201ENST00000263073 KIF2CQ99661 725 aa12.88□□□□□ -0.35
SMG6-201ENST00000263073 CDK8P49336 464 aa12.88□□□□□ -0.35
SMG6-201ENST00000263073 KCNA1Q09470 495 aa12.88□□□□□ -0.35
SMG6-201ENST00000263073 TMEM270Q6UE05 265 aa12.88□□□□□ -0.35
SMG6-201ENST00000263073 EP400NLQ6ZTU2 488 aa12.88□□□□□ -0.35
SMG6-201ENST00000263073 UNC13DQ70J99 1090 aa12.88□□□□□ -0.35
SMG6-201ENST00000263073 GLYCTKQ8IVS8 523 aa12.88□□□□□ -0.35
SMG6-201ENST00000263073 THNSL1Q8IYQ7 743 aa12.88□□□□□ -0.35
SMG6-201ENST00000263073 RPS6KC1Q96S38 1066 aa12.88□□□□□ -0.35
SMG6-201ENST00000263073 BUD13Q9BRD0 619 aaKnown RBP eCLIP12.88□□□□□ -0.358e-7■■■■■ 32.7
SMG6-201ENST00000263073 STOML1Q9UBI4 398 aa12.88□□□□□ -0.35
SMG6-201ENST00000263073 KCNG1Q9UIX4 513 aa12.88□□□□□ -0.35
SMG6-201ENST00000263073 FTLP02792 175 aaPredicted RBP12.88□□□□□ -0.35
SMG6-201ENST00000263073 KLK7P49862 253 aa12.88□□□□□ -0.35
SMG6-201ENST00000263073 SEPT2Q15019 361 aa12.88□□□□□ -0.35
SMG6-201ENST00000263073 GPATCH4Q5T3I0 446 aaKnown RBP12.88□□□□□ -0.35
SMG6-201ENST00000263073 NRBF2Q96F24 287 aa12.88□□□□□ -0.35
SMG6-201ENST00000263073 NDE1Q9NXR1 346 aa12.88□□□□□ -0.35
SMG6-201ENST00000263073 POTEFA5A3E0 1075 aa12.88□□□□□ -0.35
SMG6-201ENST00000263073 PFDN6O15212 129 aa12.88□□□□□ -0.35
SMG6-201ENST00000263073 POTEIP0CG38 1075 aa12.88□□□□□ -0.35
SMG6-201ENST00000263073 HADHAP40939 763 aa12.88□□□□□ -0.35
SMG6-201ENST00000263073 SEC24CP53992 1094 aa12.88□□□□□ -0.35
SMG6-201ENST00000263073 AP2B1P63010 937 aa12.88□□□□□ -0.35
SMG6-201ENST00000263073 GPC5P78333 572 aa12.88□□□□□ -0.35
Retrieved 100 of 20,778 RNA–protein pairs in 31.5 ms