RNA–Protein interactions for RNA: ENST00000262327.9

LIG3-201, Transcript of DNA ligase 3, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene LIG3, Length 3,055 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIG3-201ENST00000262327 hCG_1984214I3L0E3 225 aa10.94□□□□□ -0.66
LIG3-201ENST00000262327 MEIS2O14770 477 aa10.94□□□□□ -0.66
LIG3-201ENST00000262327 NR3C1P04150 777 aa10.94□□□□□ -0.66
LIG3-201ENST00000262327 MYZAPP0CAP1 466 aa10.94□□□□□ -0.66
LIG3-201ENST00000262327 ARHGAP44Q17R89 818 aa10.94□□□□□ -0.66
LIG3-201ENST00000262327 ZNF713Q8N859 430 aaPredicted RBP10.94□□□□□ -0.66
LIG3-201ENST00000262327 LRRC57Q8N9N7 239 aa10.94□□□□□ -0.66
LIG3-201ENST00000262327 WHAMMQ8TF30 809 aa10.94□□□□□ -0.66
LIG3-201ENST00000262327 RUBCNQ92622 972 aa10.94□□□□□ -0.66
LIG3-201ENST00000262327 ISCUQ9H1K1 167 aa10.94□□□□□ -0.66
LIG3-201ENST00000262327 KCNMB3Q9NPA1 279 aa10.94□□□□□ -0.66
LIG3-201ENST00000262327 CNOT8Q9UFF9 292 aaKnown RBP10.94□□□□□ -0.66
LIG3-201ENST00000262327 PGRMC1O00264 195 aaKnown RBP10.93□□□□□ -0.66
LIG3-201ENST00000262327 EML1O00423 815 aa10.93□□□□□ -0.66
LIG3-201ENST00000262327 LRRN2O75325 713 aa10.93□□□□□ -0.66
LIG3-201ENST00000262327 NPM3O75607 178 aaKnown RBP10.93□□□□□ -0.66
LIG3-201ENST00000262327 FGGP02679 453 aa10.93□□□□□ -0.66
LIG3-201ENST00000262327 TRIM49P0CI25 452 aa10.93□□□□□ -0.66
LIG3-201ENST00000262327 TRIM49CP0CI26 452 aa10.93□□□□□ -0.66
LIG3-201ENST00000262327 RBM5P52756 815 aaKnown RBP eCLIP10.93□□□□□ -0.66
LIG3-201ENST00000262327 GALCP54803 685 aa10.93□□□□□ -0.66
LIG3-201ENST00000262327 ZNF844Q08AG5 666 aa10.93□□□□□ -0.66
LIG3-201ENST00000262327 QPCTQ16769 361 aa10.93□□□□□ -0.66
LIG3-201ENST00000262327 APOBEC3HQ6NTF7 200 aaKnown RBP10.93□□□□□ -0.66
LIG3-201ENST00000262327 CDC42EP5Q6NZY7 148 aa10.93□□□□□ -0.66
LIG3-201ENST00000262327 MMS22LQ6ZRQ5 1243 aa10.93□□□□□ -0.66
LIG3-201ENST00000262327 MAEAQ7L5Y9 396 aa10.93□□□□□ -0.66
LIG3-201ENST00000262327 MDM1Q8TC05 714 aa10.93□□□□□ -0.66
LIG3-201ENST00000262327 DNAJC18Q9H819 358 aa10.93□□□□□ -0.66
LIG3-201ENST00000262327 TMBIM4Q9HC24 238 aa10.93□□□□□ -0.66
LIG3-201ENST00000262327 TMEM59LQ9UK28 342 aa10.93□□□□□ -0.66
LIG3-201ENST00000262327 MYH4Q9Y623 1939 aa10.93□□□□□ -0.66
LIG3-201ENST00000262327 IGSF9BQ9UPX0 1349 aa10.93□□□□□ -0.66
LIG3-201ENST00000262327 H2AFZP0C0S5 128 aa10.93□□□□□ -0.66
LIG3-201ENST00000262327 HSPA9P38646 679 aaKnown RBP10.93□□□□□ -0.66
LIG3-201ENST00000262327 CYP2J2P51589 502 aa10.93□□□□□ -0.66
LIG3-201ENST00000262327 SEPT2Q15019 361 aa10.93□□□□□ -0.66
LIG3-201ENST00000262327 EPHA7Q15375 998 aa10.93□□□□□ -0.66
LIG3-201ENST00000262327 SPRED3Q2MJR0 410 aa10.93□□□□□ -0.66
LIG3-201ENST00000262327 SLFN13Q68D06 897 aa10.93□□□□□ -0.66
LIG3-201ENST00000262327 H2AFVQ71UI9 128 aa10.93□□□□□ -0.66
LIG3-201ENST00000262327 PALB2Q86YC2 1186 aa10.93□□□□□ -0.66
LIG3-201ENST00000262327 KIAA0825Q8IV33 1275 aa10.93□□□□□ -0.66
LIG3-201ENST00000262327 SCFD2Q8WU76 684 aa10.93□□□□□ -0.66
LIG3-201ENST00000262327 GOPCQ9HD26 462 aa10.93□□□□□ -0.66
LIG3-201ENST00000262327 SIX2Q9NPC8 291 aa10.93□□□□□ -0.66
LIG3-201ENST00000262327 TAS2R14Q9NYV8 317 aa10.93□□□□□ -0.66
LIG3-201ENST00000262327 ATP8A1Q9Y2Q0 1164 aa10.93□□□□□ -0.66
LIG3-201ENST00000262327 ASTN1O14525 1302 aa10.93□□□□□ -0.66
LIG3-201ENST00000262327 FOCADQ5VW36 1801 aa10.93□□□□□ -0.66
LIG3-201ENST00000262327 TMEM110-MUSTN1A8MSY1 372 aa10.93□□□□□ -0.66
LIG3-201ENST00000262327 MEFVO15553 781 aaPredicted RBP10.93□□□□□ -0.66
LIG3-201ENST00000262327 EVI5O60447 810 aa10.93□□□□□ -0.66
LIG3-201ENST00000262327 FLOT1O75955 427 aa10.93□□□□□ -0.66
LIG3-201ENST00000262327 GCFC2P16383 781 aaKnown RBP10.93□□□□□ -0.66
LIG3-201ENST00000262327 ZNF76P36508 570 aa10.93□□□□□ -0.66
LIG3-201ENST00000262327 MARSP56192 900 aaKnown RBP10.93□□□□□ -0.66
LIG3-201ENST00000262327 DHX9Q08211 1270 aaKnown RBP10.93□□□□□ -0.66
LIG3-201ENST00000262327 SPIRE1Q08AE8 756 aa10.93□□□□□ -0.66
LIG3-201ENST00000262327 TBC1D10BQ4KMP7 808 aaPredicted RBP10.93□□□□□ -0.66
LIG3-201ENST00000262327 HYIQ5T013 277 aa10.93□□□□□ -0.66
LIG3-201ENST00000262327 GPATCH4Q5T3I0 446 aaKnown RBP10.93□□□□□ -0.66
LIG3-201ENST00000262327 RPAINQ86UA6 219 aa10.93□□□□□ -0.66
LIG3-201ENST00000262327 TPH2Q8IWU9 490 aa10.93□□□□□ -0.66
LIG3-201ENST00000262327 AGBL3Q8NEM8 1001 aa10.93□□□□□ -0.66
LIG3-201ENST00000262327 LNX1Q8TBB1 728 aaPredicted RBP10.93□□□□□ -0.66
LIG3-201ENST00000262327 GLG1Q92896 1179 aa10.93□□□□□ -0.66
LIG3-201ENST00000262327 SLC35C1Q96A29 364 aa10.93□□□□□ -0.66
LIG3-201ENST00000262327 CEP89Q96ST8 783 aa10.93□□□□□ -0.66
LIG3-201ENST00000262327 GMLQ99445 158 aa10.93□□□□□ -0.66
LIG3-201ENST00000262327 BUD13Q9BRD0 619 aaKnown RBP eCLIP10.93□□□□□ -0.66
LIG3-201ENST00000262327 PPP1R9AQ9ULJ8 1098 aa10.93□□□□□ -0.66
LIG3-201ENST00000262327 NFKBIEO00221 500 aa10.92□□□□□ -0.66
LIG3-201ENST00000262327 BUB1BO60566 1050 aaPredicted RBP10.92□□□□□ -0.66
LIG3-201ENST00000262327 CPP00450 1065 aa10.92□□□□□ -0.66
LIG3-201ENST00000262327 MAGOHP61326 146 aaKnown RBP10.92□□□□□ -0.66
LIG3-201ENST00000262327 EDRF1Q3B7T1 1238 aa10.92□□□□□ -0.66
LIG3-201ENST00000262327 UBAP2Q5T6F2 1119 aaKnown RBP10.92□□□□□ -0.66
LIG3-201ENST00000262327 B4GALNT4Q76KP1 1039 aa10.92□□□□□ -0.66
LIG3-201ENST00000262327 MYCT1Q8N699 235 aa10.92□□□□□ -0.66
LIG3-201ENST00000262327 MAGOHBQ96A72 148 aaKnown RBP10.92□□□□□ -0.66
LIG3-201ENST00000262327 TMOD4Q9NZQ9 345 aa10.92□□□□□ -0.66
LIG3-201ENST00000262327 CDK5RAP2Q96SN8 1893 aa10.92□□□□□ -0.66
LIG3-201ENST00000262327 TLDC2A0PJX2 215 aa10.92□□□□□ -0.66
LIG3-201ENST00000262327 DDTLA6NHG4 134 aaPredicted RBP10.92□□□□□ -0.66
LIG3-201ENST00000262327 H0YGN5 161 aa10.92□□□□□ -0.66
LIG3-201ENST00000262327 TBCAO75347 108 aaKnown RBP10.92□□□□□ -0.66
LIG3-201ENST00000262327 BIRC2Q13490 618 aa10.92□□□□□ -0.66
LIG3-201ENST00000262327 KRT71Q3SY84 523 aa10.92□□□□□ -0.66
LIG3-201ENST00000262327 MREGQ8N565 214 aa10.92□□□□□ -0.66
LIG3-201ENST00000262327 ETNPPLQ8TBG4 499 aa10.92□□□□□ -0.66
LIG3-201ENST00000262327 JDP2Q8WYK2 163 aa10.92□□□□□ -0.66
LIG3-201ENST00000262327 ARHGEF26Q96DR7 871 aa10.92□□□□□ -0.66
LIG3-201ENST00000262327 NFS1Q9Y697 457 aa10.92□□□□□ -0.66
LIG3-201ENST00000262327 COL4A5P29400 1685 aa10.92□□□□□ -0.66
LIG3-201ENST00000262327 ARFGEF1Q9Y6D6 1849 aa10.92□□□□□ -0.66
LIG3-201ENST00000262327 PHF20L1A8MW92 1017 aa10.91□□□□□ -0.66
LIG3-201ENST00000262327 HMGB1P1B2RPK0 211 aaPredicted RBP10.91□□□□□ -0.66
LIG3-201ENST00000262327 PPP1R12AO14974 1030 aaPredicted RBP10.91□□□□□ -0.66
LIG3-201ENST00000262327 MSH4O15457 936 aa10.91□□□□□ -0.66
Retrieved 100 of 20,778 RNA–protein pairs in 24.4 ms