RNA–Protein interactions for RNA: ENST00000261517.9

VPS13C-202, Transcript of vacuolar protein sorting 13 homolog C, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene VPS13C, Length 13,400 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13C-202ENST00000261517 POLR3CQ9BUI4 534 aaPredicted RBP4.63□□□□□ -1.67
VPS13C-202ENST00000261517 CAPS2Q9BXY5 557 aa4.63□□□□□ -1.67
VPS13C-202ENST00000261517 FARP1Q9Y4F1 1045 aaPredicted RBP4.63□□□□□ -1.67
VPS13C-202ENST00000261517 KCNK3O14649 394 aa4.63□□□□□ -1.67
VPS13C-202ENST00000261517 HIP1RO75146 1068 aa4.63□□□□□ -1.67
VPS13C-202ENST00000261517 CPP00450 1065 aa4.63□□□□□ -1.67
VPS13C-202ENST00000261517 P3H1Q32P28 736 aa4.63□□□□□ -1.67
VPS13C-202ENST00000261517 CDKL3Q8IVW4 592 aaPredicted RBP4.63□□□□□ -1.67
VPS13C-202ENST00000261517 UIMC1Q96RL1 719 aa4.63□□□□□ -1.67
VPS13C-202ENST00000261517 DLG5Q8TDM6 1919 aa4.62□□□□□ -1.67
VPS13C-202ENST00000261517 MYCNP04198 464 aaPredicted RBP4.62□□□□□ -1.67
VPS13C-202ENST00000261517 ADD1P35611 737 aaKnown RBP4.62□□□□□ -1.67
VPS13C-202ENST00000261517 UGP2Q16851 508 aa4.62□□□□□ -1.67
VPS13C-202ENST00000261517 CASC4Q6P4E1 433 aa4.62□□□□□ -1.67
VPS13C-202ENST00000261517 FAM83AQ86UY5 434 aa4.62□□□□□ -1.67
VPS13C-202ENST00000261517 PLEKHA5Q9HAU0 1116 aa4.62□□□□□ -1.67
VPS13C-202ENST00000261517 CHD2O14647 1828 aaKnown RBP4.62□□□□□ -1.67
VPS13C-202ENST00000261517 PPAN-P2RY11A0A0B4J1V8 794 aaPredicted RBP4.62□□□□□ -1.67
VPS13C-202ENST00000261517 ECE2O60344 883 aa4.62□□□□□ -1.67
VPS13C-202ENST00000261517 H2AFYO75367 372 aaKnown RBP4.62□□□□□ -1.67
VPS13C-202ENST00000261517 NDUFA10O95299 355 aa4.62□□□□□ -1.67
VPS13C-202ENST00000261517 NPTXRO95502 500 aa4.62□□□□□ -1.67
VPS13C-202ENST00000261517 PLCG1P19174 1290 aa4.62□□□□□ -1.67
VPS13C-202ENST00000261517 RXRAP19793 462 aa4.62□□□□□ -1.67
VPS13C-202ENST00000261517 ADORA1P30542 326 aa4.62□□□□□ -1.67
VPS13C-202ENST00000261517 IFRD2Q12894 506 aaPredicted RBP4.62□□□□□ -1.67
VPS13C-202ENST00000261517 MAPRE2Q15555 327 aa4.62□□□□□ -1.67
VPS13C-202ENST00000261517 SGO2Q562F6 1265 aa4.62□□□□□ -1.67
VPS13C-202ENST00000261517 STAG2Q8N3U4 1231 aa4.62□□□□□ -1.67
VPS13C-202ENST00000261517 PPANQ9NQ55 473 aaKnown RBP4.62□□□□□ -1.67
VPS13C-202ENST00000261517 XRN1Q8IZH2 1706 aaKnown RBP4.62□□□□□ -1.67
VPS13C-202ENST00000261517 KPNA7A9QM74 516 aa4.62□□□□□ -1.67
VPS13C-202ENST00000261517 ALDH1A1P00352 501 aa4.62□□□□□ -1.67
VPS13C-202ENST00000261517 FXR2P51116 673 aaKnown RBP eCLIP4.62□□□□□ -1.672e-7■■■■□ 19.9
VPS13C-202ENST00000261517 TBCCQ15814 346 aa4.62□□□□□ -1.67
VPS13C-202ENST00000261517 FAM47AQ5JRC9 791 aa4.62□□□□□ -1.67
VPS13C-202ENST00000261517 TBC1D19Q8N5T2 526 aa4.62□□□□□ -1.67
VPS13C-202ENST00000261517 KCNB2Q92953 911 aa4.62□□□□□ -1.67
VPS13C-202ENST00000261517 ZNF653Q96CK0 615 aa4.62□□□□□ -1.67
VPS13C-202ENST00000261517 GPRASP2Q96D09 838 aa4.62□□□□□ -1.67
VPS13C-202ENST00000261517 MSTO1Q9BUK6 570 aa4.62□□□□□ -1.67
VPS13C-202ENST00000261517 DSEQ9UL01 958 aa4.62□□□□□ -1.67
VPS13C-202ENST00000261517 RSPH10B2B2RC85 870 aa4.62□□□□□ -1.67
VPS13C-202ENST00000261517 MEIS1O00470 390 aa4.62□□□□□ -1.67
VPS13C-202ENST00000261517 RSPH10BP0C881 870 aa4.62□□□□□ -1.67
VPS13C-202ENST00000261517 MX2P20592 715 aa4.62□□□□□ -1.67
VPS13C-202ENST00000261517 OXCT1P55809 520 aa4.62□□□□□ -1.67
VPS13C-202ENST00000261517 CDK17Q00537 523 aa4.62□□□□□ -1.67
VPS13C-202ENST00000261517 C12orf60Q5U649 245 aa4.62□□□□□ -1.67
VPS13C-202ENST00000261517 PDXDC1Q6P996 788 aa4.62□□□□□ -1.67
VPS13C-202ENST00000261517 ERICH1Q86X53 443 aa4.62□□□□□ -1.67
VPS13C-202ENST00000261517 APLFQ8IW19 511 aaPredicted RBP4.62□□□□□ -1.67
VPS13C-202ENST00000261517 SDR42E1Q8WUS8 393 aa4.62□□□□□ -1.67
VPS13C-202ENST00000261517 FMO2Q99518 471 aa4.62□□□□□ -1.67
VPS13C-202ENST00000261517 PRR12Q9ULL5 1215 aa4.62□□□□□ -1.67
VPS13C-202ENST00000261517 MAD1L1Q9Y6D9 718 aa4.62□□□□□ -1.67
VPS13C-202ENST00000261517 CA8P35219 290 aa4.62□□□□□ -1.67
VPS13C-202ENST00000261517 ANO4Q32M45 955 aa4.62□□□□□ -1.67
VPS13C-202ENST00000261517 CCDC197Q8NCU1 140 aa4.62□□□□□ -1.67
VPS13C-202ENST00000261517 MED15Q96RN5 788 aa4.62□□□□□ -1.67
VPS13C-202ENST00000261517 FANCLQ9NW38 375 aa4.62□□□□□ -1.67
VPS13C-202ENST00000261517 PCDHA10Q9Y5I2 948 aa4.62□□□□□ -1.67
VPS13C-202ENST00000261517 GTPBP10A4D1E9 387 aaKnown RBP4.62□□□□□ -1.67
VPS13C-202ENST00000261517 ELF1P32519 619 aa4.62□□□□□ -1.67
VPS13C-202ENST00000261517 POLR2FP61218 127 aaKnown RBP4.62□□□□□ -1.67
VPS13C-202ENST00000261517 GPC5P78333 572 aa4.62□□□□□ -1.67
VPS13C-202ENST00000261517 XKR3Q5GH77 459 aa4.62□□□□□ -1.67
VPS13C-202ENST00000261517 SUSD4Q5VX71 490 aa4.62□□□□□ -1.67
VPS13C-202ENST00000261517 ZNF746Q6NUN9 644 aaPredicted RBP4.62□□□□□ -1.67
VPS13C-202ENST00000261517 DYMQ7RTS9 669 aa4.62□□□□□ -1.67
VPS13C-202ENST00000261517 ANKRD23Q86SG2 305 aa4.62□□□□□ -1.67
VPS13C-202ENST00000261517 PIP4K2CQ8TBX8 421 aa4.62□□□□□ -1.67
VPS13C-202ENST00000261517 GIPC2Q8TF65 315 aa4.62□□□□□ -1.67
VPS13C-202ENST00000261517 OSBP2Q969R2 916 aa4.62□□□□□ -1.67
VPS13C-202ENST00000261517 MMS19Q96T76 1030 aa4.62□□□□□ -1.67
VPS13C-202ENST00000261517 ZNF142P52746 1687 aaPredicted RBP4.62□□□□□ -1.67
VPS13C-202ENST00000261517 DYTNA2CJ06 578 aa4.62□□□□□ -1.67
VPS13C-202ENST00000261517 TMEM247A6NEH6 219 aa4.62□□□□□ -1.67
VPS13C-202ENST00000261517 MFAP3LO75121 409 aa4.62□□□□□ -1.67
VPS13C-202ENST00000261517 GJC1P36383 396 aa4.62□□□□□ -1.67
VPS13C-202ENST00000261517 EXOSC10Q01780 885 aaKnown RBP4.62□□□□□ -1.67
VPS13C-202ENST00000261517 DUOXA2Q1HG44 320 aa4.62□□□□□ -1.67
VPS13C-202ENST00000261517 SPOUT1Q5T280 376 aaKnown RBP4.62□□□□□ -1.67
VPS13C-202ENST00000261517 GMCL1P1Q8NEA9 526 aa4.62□□□□□ -1.67
VPS13C-202ENST00000261517 OSCP1Q8WVF1 389 aa4.62□□□□□ -1.67
VPS13C-202ENST00000261517 RMDN3Q96TC7 470 aa4.62□□□□□ -1.67
VPS13C-202ENST00000261517 LARP6Q9BRS8 491 aaKnown RBP4.62□□□□□ -1.67
VPS13C-202ENST00000261517 YY1AP1Q9H869 796 aa4.62□□□□□ -1.67
VPS13C-202ENST00000261517 AFF2P51816 1311 aa4.62□□□□□ -1.67
VPS13C-202ENST00000261517 ZNF335Q9H4Z2 1342 aaPredicted RBP4.62□□□□□ -1.67
VPS13C-202ENST00000261517 RASGRF2O14827 1237 aa4.62□□□□□ -1.67
VPS13C-202ENST00000261517 HUS1O60921 280 aa4.62□□□□□ -1.67
VPS13C-202ENST00000261517 MYL6P60660 151 aa4.62□□□□□ -1.67
VPS13C-202ENST00000261517 RAD51Q06609 339 aa4.62□□□□□ -1.67
VPS13C-202ENST00000261517 PIGHQ14442 188 aaPredicted RBP4.62□□□□□ -1.67
VPS13C-202ENST00000261517 CEP55Q53EZ4 464 aa4.62□□□□□ -1.67
VPS13C-202ENST00000261517 LRRC47Q8N1G4 583 aaKnown RBP4.62□□□□□ -1.67
VPS13C-202ENST00000261517 TSPAN17Q96FV3 270 aa4.62□□□□□ -1.67
VPS13C-202ENST00000261517 CLDN3O15551 220 aa4.62□□□□□ -1.67
VPS13C-202ENST00000261517 PRDM1O75626 825 aa4.62□□□□□ -1.67
Retrieved 100 of 20,778 RNA–protein pairs in 11.3 ms