RNA–Protein interactions for RNA: ENST00000253024.9

TRIM28-201, Transcript of tripartite motif containing 28, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene TRIM28, Length 2,960 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM28-201ENST00000253024 FOXN3O00409 490 aaPredicted RBP23.17■■□□□ 1.3
TRIM28-201ENST00000253024 EYA4O95677 639 aa23.17■■□□□ 1.3
TRIM28-201ENST00000253024 MARSP56192 900 aaKnown RBP23.17■■□□□ 1.3
TRIM28-201ENST00000253024 VPS36Q86VN1 386 aa23.17■■□□□ 1.3
TRIM28-201ENST00000253024 KIFC3Q9BVG8 833 aa23.17■■□□□ 1.3
TRIM28-201ENST00000253024 UNC45AQ9H3U1 944 aa23.17■■□□□ 1.3
TRIM28-201ENST00000253024 TAF1DQ9H5J8 278 aaPredicted RBP23.17■■□□□ 1.3
TRIM28-201ENST00000253024 ERVK-5Q9HDB9 667 aa23.17■■□□□ 1.3
TRIM28-201ENST00000253024 ZMYM2Q9UBW7 1377 aa23.17■■□□□ 1.3
TRIM28-201ENST00000253024 FMO5P49326 533 aa23.17■■□□□ 1.3
TRIM28-201ENST00000253024 CORO7P57737 925 aa23.17■■□□□ 1.3
TRIM28-201ENST00000253024 UAP1Q16222 522 aaPredicted RBP23.17■■□□□ 1.3
TRIM28-201ENST00000253024 AGBL1Q96MI9 1066 aa23.17■■□□□ 1.3
TRIM28-201ENST00000253024 USP20Q9Y2K6 914 aa23.17■■□□□ 1.3
TRIM28-201ENST00000253024 RPS6KA5O75582 802 aa23.16■■□□□ 1.3
TRIM28-201ENST00000253024 ITIH3Q06033 890 aa23.16■■□□□ 1.3
TRIM28-201ENST00000253024 DHX9Q08211 1270 aaKnown RBP23.16■■□□□ 1.3
TRIM28-201ENST00000253024 TTC31Q49AM3 519 aaPredicted RBP23.16■■□□□ 1.3
TRIM28-201ENST00000253024 ALS2CLQ60I27 953 aa23.16■■□□□ 1.3
TRIM28-201ENST00000253024 LXNQ9BS40 222 aa23.16■■□□□ 1.3
TRIM28-201ENST00000253024 UBE2TQ9NPD8 197 aaPredicted RBP23.16■■□□□ 1.3
TRIM28-201ENST00000253024 IGLV3-22A0A075B6J6 115 aa23.16■■□□□ 1.3
TRIM28-201ENST00000253024 K7ENM7 598 aa23.16■■□□□ 1.3
TRIM28-201ENST00000253024 ALDH1B1P30837 517 aa23.16■■□□□ 1.3
TRIM28-201ENST00000253024 PSMC2P35998 433 aaKnown RBP23.16■■□□□ 1.3
TRIM28-201ENST00000253024 HDLBPQ00341 1268 aaKnown RBP23.16■■□□□ 1.3
TRIM28-201ENST00000253024 GRIPAP1Q4V328 841 aa23.16■■□□□ 1.3
TRIM28-201ENST00000253024 CCDC127Q96BQ5 260 aa23.16■■□□□ 1.3
TRIM28-201ENST00000253024 F8VZ95 297 aa23.16■■□□□ 1.3
TRIM28-201ENST00000253024 C21orf2O43822 256 aa23.16■■□□□ 1.3
TRIM28-201ENST00000253024 LSP1P33241 339 aa23.16■■□□□ 1.3
TRIM28-201ENST00000253024 SOX10P56693 466 aa23.16■■□□□ 1.3
TRIM28-201ENST00000253024 Q4G0T1 1027 aa23.16■■□□□ 1.3
TRIM28-201ENST00000253024 PHLDB3Q6NSJ2 640 aa23.16■■□□□ 1.3
TRIM28-201ENST00000253024 NSMFQ6X4W1 530 aa23.16■■□□□ 1.3
TRIM28-201ENST00000253024 PPP4R3CPQ6ZMV5 832 aa23.16■■□□□ 1.3
TRIM28-201ENST00000253024 HS2ST1Q7LGA3 356 aa23.16■■□□□ 1.3
TRIM28-201ENST00000253024 TMEM39BQ9GZU3 492 aa23.16■■□□□ 1.3
TRIM28-201ENST00000253024 GOLGA6L10A6NI86 522 aa23.15■■□□□ 1.3
TRIM28-201ENST00000253024 ECHS1P30084 290 aa23.15■■□□□ 1.3
TRIM28-201ENST00000253024 C2CD6Q53TS8 623 aa23.15■■□□□ 1.3
TRIM28-201ENST00000253024 PODNQ7Z5L7 613 aa23.15■■□□□ 1.3
TRIM28-201ENST00000253024 MDM1Q8TC05 714 aa23.15■■□□□ 1.3
TRIM28-201ENST00000253024 MKL1Q969V6 931 aa23.15■■□□□ 1.3
TRIM28-201ENST00000253024 CBWD1Q9BRT8 395 aa23.15■■□□□ 1.3
TRIM28-201ENST00000253024 NOVA2Q9UNW9 492 aaKnown RBP23.15■■□□□ 1.3
TRIM28-201ENST00000253024 FRMD4BQ9Y2L6 1034 aa23.15■■□□□ 1.3
TRIM28-201ENST00000253024 PTPN22Q9Y2R2 807 aa23.15■■□□□ 1.3
TRIM28-201ENST00000253024 TAF1LQ8IZX4 1826 aa23.15■■□□□ 1.3
TRIM28-201ENST00000253024 HIP1RO75146 1068 aa23.15■■□□□ 1.3
TRIM28-201ENST00000253024 TNFAIP3P21580 790 aa23.15■■□□□ 1.3
TRIM28-201ENST00000253024 SSTR3P32745 418 aaPredicted RBP23.15■■□□□ 1.3
TRIM28-201ENST00000253024 CTNNBL1Q8WYA6 563 aaPredicted RBP23.15■■□□□ 1.3
TRIM28-201ENST00000253024 FAM20AQ96MK3 541 aa23.15■■□□□ 1.3
TRIM28-201ENST00000253024 HSD17B14Q9BPX1 270 aa23.15■■□□□ 1.3
TRIM28-201ENST00000253024 BUD13Q9BRD0 619 aaKnown RBP eCLIP23.15■■□□□ 1.36e-10■□□□□ 10.3
TRIM28-201ENST00000253024 AGPAT3Q9NRZ7 376 aa23.15■■□□□ 1.3
TRIM28-201ENST00000253024 SNX24Q9Y343 169 aa23.15■■□□□ 1.3
TRIM28-201ENST00000253024 NHSQ6T4R5 1651 aa23.15■■□□□ 1.3
TRIM28-201ENST00000253024 SHOX2O60902 331 aaPredicted RBP23.14■■□□□ 1.3
TRIM28-201ENST00000253024 APBA3O96018 575 aa23.14■■□□□ 1.3
TRIM28-201ENST00000253024 MAGEA9P43362 315 aa23.14■■□□□ 1.3
TRIM28-201ENST00000253024 DCAF12L1Q5VU92 463 aa23.14■■□□□ 1.3
TRIM28-201ENST00000253024 C1orf186Q6ZWK4 172 aa23.14■■□□□ 1.3
TRIM28-201ENST00000253024 NT5DC3Q86UY8 548 aa23.14■■□□□ 1.3
TRIM28-201ENST00000253024 IL31RAQ8NI17 732 aa23.14■■□□□ 1.3
TRIM28-201ENST00000253024 MASTLQ96GX5 879 aa23.14■■□□□ 1.3
TRIM28-201ENST00000253024 POP1Q99575 1024 aaKnown RBP23.14■■□□□ 1.3
TRIM28-201ENST00000253024 INTS2Q9H0H0 1204 aaKnown RBP23.14■■□□□ 1.3
TRIM28-201ENST00000253024 COG5Q9UP83 839 aa23.14■■□□□ 1.3
TRIM28-201ENST00000253024 ARHGEF35A5YM69 484 aa23.14■■□□□ 1.29
TRIM28-201ENST00000253024 PPIP5K2O43314 1243 aa23.14■■□□□ 1.29
TRIM28-201ENST00000253024 WDR11Q9BZH6 1224 aa23.14■■□□□ 1.29
TRIM28-201ENST00000253024 AMFRQ9UKV5 643 aa23.14■■□□□ 1.29
TRIM28-201ENST00000253024 GCOM1H8Y6P7 765 aaPredicted RBP23.13■■□□□ 1.29
TRIM28-201ENST00000253024 PPP1R12BO60237 982 aaPredicted RBP23.13■■□□□ 1.29
TRIM28-201ENST00000253024 POLR2MP0CAP2 368 aa23.13■■□□□ 1.29
TRIM28-201ENST00000253024 SOX5P35711 763 aa23.13■■□□□ 1.29
TRIM28-201ENST00000253024 MYL7Q01449 175 aa23.13■■□□□ 1.29
TRIM28-201ENST00000253024 MESDQ14696 234 aa23.13■■□□□ 1.29
TRIM28-201ENST00000253024 EPC2Q52LR7 807 aa23.13■■□□□ 1.29
TRIM28-201ENST00000253024 GLE1Q53GS7 698 aaKnown RBP23.13■■□□□ 1.29
TRIM28-201ENST00000253024 KRT27Q7Z3Y8 459 aa23.13■■□□□ 1.29
TRIM28-201ENST00000253024 ARHGEF19Q8IW93 802 aa23.13■■□□□ 1.29
TRIM28-201ENST00000253024 KRT35Q92764 455 aa23.13■■□□□ 1.29
TRIM28-201ENST00000253024 NAP1L4Q99733 375 aaKnown RBP23.13■■□□□ 1.29
TRIM28-201ENST00000253024 PLCB1Q9NQ66 1216 aa23.13■■□□□ 1.29
TRIM28-201ENST00000253024 CTTNBP2NLQ9P2B4 639 aa23.13■■□□□ 1.29
TRIM28-201ENST00000253024 SLCO1A2P46721 670 aa23.13■■□□□ 1.29
TRIM28-201ENST00000253024 PLTPP55058 493 aa23.13■■□□□ 1.29
TRIM28-201ENST00000253024 KRT71Q3SY84 523 aa23.13■■□□□ 1.29
TRIM28-201ENST00000253024 TATDN1Q6P1N9 297 aa23.13■■□□□ 1.29
TRIM28-201ENST00000253024 KAT2BQ92831 832 aa23.13■■□□□ 1.29
TRIM28-201ENST00000253024 ATP6V1G3Q96LB4 118 aa23.13■■□□□ 1.29
TRIM28-201ENST00000253024 MBOAT7Q96N66 472 aa23.13■■□□□ 1.29
TRIM28-201ENST00000253024 DNAJC17Q9NVM6 304 aaKnown RBP23.13■■□□□ 1.29
TRIM28-201ENST00000253024 EMSYQ7Z589 1322 aa23.13■■□□□ 1.29
TRIM28-201ENST00000253024 ALG3Q92685 438 aa23.13■■□□□ 1.29
TRIM28-201ENST00000253024 SUGT1Q9Y2Z0 365 aa23.13■■□□□ 1.29
TRIM28-201ENST00000253024 IFFO1Q0D2I5 559 aa23.12■■□□□ 1.29
Retrieved 100 of 20,778 RNA–protein pairs in 22.7 ms