RNA–Protein interactions for RNA: ENST00000238497.9

VPS4B-201, Transcript of vacuolar protein sorting 4 homolog B, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene VPS4B, Length 3,324 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS4B-201ENST00000238497 CCDC40Q4G0X9 1142 aa9.54□□□□□ -0.88
VPS4B-201ENST00000238497 TCP11X2Q5H9J9 407 aa9.54□□□□□ -0.88
VPS4B-201ENST00000238497 ANKRD40Q6AI12 368 aa9.54□□□□□ -0.88
VPS4B-201ENST00000238497 LARP4BQ92615 738 aaKnown RBP9.54□□□□□ -0.88
VPS4B-201ENST00000238497 CHP1Q99653 195 aa9.54□□□□□ -0.88
VPS4B-201ENST00000238497 NLRC4Q9NPP4 1024 aa9.54□□□□□ -0.88
VPS4B-201ENST00000238497 SAMM50Q9Y512 469 aa9.54□□□□□ -0.88
VPS4B-201ENST00000238497 GRIN2DO15399 1336 aa9.54□□□□□ -0.88
VPS4B-201ENST00000238497 MYMKA6NI61 221 aa9.54□□□□□ -0.88
VPS4B-201ENST00000238497 RNF225M0QZC1 329 aaPredicted RBP9.54□□□□□ -0.88
VPS4B-201ENST00000238497 IPO7O95373 1038 aaKnown RBP9.54□□□□□ -0.88
VPS4B-201ENST00000238497 SLU7O95391 586 aaKnown RBP9.54□□□□□ -0.88
VPS4B-201ENST00000238497 MMP3P08254 477 aa9.54□□□□□ -0.88
VPS4B-201ENST00000238497 SUPT20HL2P0C7V6 817 aa9.54□□□□□ -0.88
VPS4B-201ENST00000238497 UBA1P22314 1058 aaKnown RBP9.54□□□□□ -0.88
VPS4B-201ENST00000238497 EPHB4P54760 987 aa9.54□□□□□ -0.88
VPS4B-201ENST00000238497 ETF1P62495 437 aaKnown RBP9.54□□□□□ -0.88
VPS4B-201ENST00000238497 ARHGAP1Q07960 439 aa9.54□□□□□ -0.88
VPS4B-201ENST00000238497 HSDL1Q3SXM5 330 aa9.54□□□□□ -0.88
VPS4B-201ENST00000238497 CCDC62Q6P9F0 684 aa9.54□□□□□ -0.88
VPS4B-201ENST00000238497 NLRX1Q86UT6 975 aa9.54□□□□□ -0.88
VPS4B-201ENST00000238497 CCDC155Q8N6L0 562 aa9.54□□□□□ -0.88
VPS4B-201ENST00000238497 DDX12PQ92771 950 aa9.54□□□□□ -0.88
VPS4B-201ENST00000238497 PSMB7Q99436 277 aa9.54□□□□□ -0.88
VPS4B-201ENST00000238497 TUBGCP2Q9BSJ2 902 aa9.54□□□□□ -0.88
VPS4B-201ENST00000238497 TRIM9Q9C026 710 aa9.54□□□□□ -0.88
VPS4B-201ENST00000238497 DEF6Q9H4E7 631 aa9.54□□□□□ -0.88
VPS4B-201ENST00000238497 LUC7L2Q9Y383 392 aaKnown RBP9.54□□□□□ -0.88
VPS4B-201ENST00000238497 A0A1W2PPC1 479 aa9.54□□□□□ -0.88
VPS4B-201ENST00000238497 A6NJR5 290 aa9.54□□□□□ -0.88
VPS4B-201ENST00000238497 KIAA0355O15063 1070 aa9.54□□□□□ -0.88
VPS4B-201ENST00000238497 SLC34A2O95436 690 aa9.54□□□□□ -0.88
VPS4B-201ENST00000238497 ABL1P00519 1130 aa9.54□□□□□ -0.88
VPS4B-201ENST00000238497 CCDC175P0C221 793 aa9.54□□□□□ -0.88
VPS4B-201ENST00000238497 PPIGQ13427 754 aaKnown RBP eCLIP9.54□□□□□ -0.88
VPS4B-201ENST00000238497 SYCP1Q15431 976 aa9.54□□□□□ -0.88
VPS4B-201ENST00000238497 KIAA0753Q2KHM9 967 aa9.54□□□□□ -0.88
VPS4B-201ENST00000238497 C1orf53Q5VUE5 145 aa9.54□□□□□ -0.88
VPS4B-201ENST00000238497 GALNT17Q6IS24 598 aa9.54□□□□□ -0.88
VPS4B-201ENST00000238497 POTEGQ6S5H5 508 aa9.54□□□□□ -0.88
VPS4B-201ENST00000238497 KIAA1328Q86T90 577 aa9.54□□□□□ -0.88
VPS4B-201ENST00000238497 PIGOQ8TEQ8 1089 aa9.54□□□□□ -0.88
VPS4B-201ENST00000238497 BCAS3Q9H6U6 928 aa9.54□□□□□ -0.88
VPS4B-201ENST00000238497 EHMT1Q9H9B1 1298 aa9.54□□□□□ -0.88
VPS4B-201ENST00000238497 MAP3K20Q9NYL2 800 aaKnown RBP9.54□□□□□ -0.88
VPS4B-201ENST00000238497 TBX21Q9UL17 535 aa9.54□□□□□ -0.88
VPS4B-201ENST00000238497 ALPK3Q96L96 1907 aa9.53□□□□□ -0.88
VPS4B-201ENST00000238497 RBM47A0AV96 593 aaKnown RBP9.53□□□□□ -0.88
VPS4B-201ENST00000238497 ENC1O14682 589 aa9.53□□□□□ -0.88
VPS4B-201ENST00000238497 KPNA6O60684 536 aa9.53□□□□□ -0.88
VPS4B-201ENST00000238497 ZNF18P17022 549 aa9.53□□□□□ -0.88
VPS4B-201ENST00000238497 CDK7P50613 346 aa9.53□□□□□ -0.88
VPS4B-201ENST00000238497 CYP27A1Q02318 531 aa9.53□□□□□ -0.88
VPS4B-201ENST00000238497 NCBP1Q09161 790 aaKnown RBP9.53□□□□□ -0.88
VPS4B-201ENST00000238497 PTGISQ16647 500 aa9.53□□□□□ -0.88
VPS4B-201ENST00000238497 MFSD5Q6N075 450 aa9.53□□□□□ -0.88
VPS4B-201ENST00000238497 RAD9BQ6WBX8 426 aa9.53□□□□□ -0.88
VPS4B-201ENST00000238497 ZNF365Q70YC5 407 aa9.53□□□□□ -0.88
VPS4B-201ENST00000238497 TPH2Q8IWU9 490 aa9.53□□□□□ -0.88
VPS4B-201ENST00000238497 CNOT6LQ96LI5 555 aaKnown RBP9.53□□□□□ -0.88
VPS4B-201ENST00000238497 BUD13Q9BRD0 619 aaKnown RBP eCLIP9.53□□□□□ -0.889e-7■□□□□ 10.7
VPS4B-201ENST00000238497 PRO3102Q9H379 93 aa9.53□□□□□ -0.88
VPS4B-201ENST00000238497 MRPL44Q9H9J2 332 aaKnown RBP9.53□□□□□ -0.88
VPS4B-201ENST00000238497 MACROD2A1Z1Q3 448 aa9.53□□□□□ -0.88
VPS4B-201ENST00000238497 KIF5CO60282 957 aa9.53□□□□□ -0.88
VPS4B-201ENST00000238497 PTPROQ16827 1216 aa9.53□□□□□ -0.88
VPS4B-201ENST00000238497 KCNV1Q6PIU1 500 aa9.53□□□□□ -0.88
VPS4B-201ENST00000238497 CACNA2D4Q7Z3S7 1137 aa9.53□□□□□ -0.88
VPS4B-201ENST00000238497 GPBP1Q86WP2 473 aa9.53□□□□□ -0.88
VPS4B-201ENST00000238497 PYM1Q9BRP8 204 aaKnown RBP9.53□□□□□ -0.88
VPS4B-201ENST00000238497 ANO3Q9BYT9 981 aa9.53□□□□□ -0.88
VPS4B-201ENST00000238497 ZNHIT6Q9NWK9 470 aaKnown RBP9.53□□□□□ -0.88
VPS4B-201ENST00000238497 RGL1Q9NZL6 768 aa9.53□□□□□ -0.88
VPS4B-201ENST00000238497 TRIM10Q9UDY6 481 aa9.53□□□□□ -0.88
VPS4B-201ENST00000238497 TCEAL9Q9UHQ7 104 aa9.53□□□□□ -0.88
VPS4B-201ENST00000238497 RWDD2AQ9UIY3 292 aa9.53□□□□□ -0.88
VPS4B-201ENST00000238497 RBAK-RBAKDNI3L0D1 243 aa9.53□□□□□ -0.88
VPS4B-201ENST00000238497 MEIS2O14770 477 aa9.53□□□□□ -0.88
VPS4B-201ENST00000238497 RGS20O76081 388 aa9.53□□□□□ -0.88
VPS4B-201ENST00000238497 MARK3P27448 753 aa9.53□□□□□ -0.88
VPS4B-201ENST00000238497 SMARCA1P28370 1054 aa9.53□□□□□ -0.88
VPS4B-201ENST00000238497 PSEN2P49810 448 aa9.53□□□□□ -0.88
VPS4B-201ENST00000238497 MRPS9P82933 396 aaKnown RBP9.53□□□□□ -0.88
VPS4B-201ENST00000238497 SP2Q02086 613 aa9.53□□□□□ -0.88
VPS4B-201ENST00000238497 NEDD9Q14511 834 aa9.53□□□□□ -0.88
VPS4B-201ENST00000238497 TDRD12Q587J7 1177 aaKnown RBP9.53□□□□□ -0.88
VPS4B-201ENST00000238497 NT5DC1Q5TFE4 455 aa9.53□□□□□ -0.88
VPS4B-201ENST00000238497 TRIM50Q86XT4 487 aa9.53□□□□□ -0.88
VPS4B-201ENST00000238497 RDH13Q8NBN7 331 aa9.53□□□□□ -0.88
VPS4B-201ENST00000238497 GLG1Q92896 1179 aa9.53□□□□□ -0.88
VPS4B-201ENST00000238497 CAPZA3Q96KX2 299 aa9.53□□□□□ -0.88
VPS4B-201ENST00000238497 AGPAT5Q9NUQ2 364 aa9.53□□□□□ -0.88
VPS4B-201ENST00000238497 HDAC6Q9UBN7 1215 aa9.53□□□□□ -0.88
VPS4B-201ENST00000238497 A0A1B0GTH6 734 aa9.52□□□□□ -0.89
VPS4B-201ENST00000238497 TTC26A0AVF1 554 aa9.52□□□□□ -0.89
VPS4B-201ENST00000238497 GYPCP04921 128 aa9.52□□□□□ -0.89
VPS4B-201ENST00000238497 CELF3Q5SZQ8 465 aaKnown RBP9.52□□□□□ -0.89
VPS4B-201ENST00000238497 FKBP15Q5T1M5 1219 aa9.52□□□□□ -0.89
VPS4B-201ENST00000238497 P2RX5Q93086 422 aa9.52□□□□□ -0.89
VPS4B-201ENST00000238497 MTIF3Q9H2K0 278 aaKnown RBP9.52□□□□□ -0.89
Retrieved 100 of 20,778 RNA–protein pairs in 15.2 ms