RNA–Protein interactions for RNA: ENST00000640313.1

VPS35-212, Transcript of VPS35, retromer complex component, humanhuman

TSL 5 BASIC

Gene VPS35, Length 141 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS35-212ENST00000640313 ARHGEF19Q8IW93 802 aa1.16□□□□□ -2.22
VPS35-212ENST00000640313 LCORLQ8N3X6 602 aa1.16□□□□□ -2.22
VPS35-212ENST00000640313 MDGA1Q8NFP4 955 aa1.16□□□□□ -2.22
VPS35-212ENST00000640313 CAGE1Q8TC20 777 aa1.16□□□□□ -2.22
VPS35-212ENST00000640313 BTN2A2Q8WVV5 523 aa1.16□□□□□ -2.22
VPS35-212ENST00000640313 ATXN2LQ8WWM7 1075 aaKnown RBP1.16□□□□□ -2.22
VPS35-212ENST00000640313 SLC9A6Q92581 669 aa1.16□□□□□ -2.22
VPS35-212ENST00000640313 C1orf159Q96HA4 380 aa1.16□□□□□ -2.22
VPS35-212ENST00000640313 CRBNQ96SW2 442 aa1.16□□□□□ -2.22
VPS35-212ENST00000640313 GPHA2Q96T91 129 aa1.16□□□□□ -2.22
VPS35-212ENST00000640313 NELL2Q99435 816 aa1.16□□□□□ -2.22
VPS35-212ENST00000640313 WDR11Q9BZH6 1224 aa1.16□□□□□ -2.22
VPS35-212ENST00000640313 SLC6A15Q9H2J7 730 aa1.16□□□□□ -2.22
VPS35-212ENST00000640313 INCENPQ9NQS7 918 aa1.16□□□□□ -2.22
VPS35-212ENST00000640313 ARHGAP28Q9P2N2 729 aa1.16□□□□□ -2.22
VPS35-212ENST00000640313 DKK2Q9UBU2 259 aa1.16□□□□□ -2.22
VPS35-212ENST00000640313 ZNF70Q9UC06 446 aaPredicted RBP1.16□□□□□ -2.22
VPS35-212ENST00000640313 FAM184BQ9ULE4 1060 aa1.16□□□□□ -2.22
VPS35-212ENST00000640313 VWA7Q9Y334 891 aa1.16□□□□□ -2.22
VPS35-212ENST00000640313 UBE2QL1A1L167 161 aa1.15□□□□□ -2.23
VPS35-212ENST00000640313 PIPSLA2A3N6 862 aa1.15□□□□□ -2.23
VPS35-212ENST00000640313 TBX1O43435 398 aa1.15□□□□□ -2.23
VPS35-212ENST00000640313 LPXNO60711 386 aa1.15□□□□□ -2.23
VPS35-212ENST00000640313 PROP1O75360 226 aa1.15□□□□□ -2.23
VPS35-212ENST00000640313 RECQL4O94761 1208 aa1.15□□□□□ -2.23
VPS35-212ENST00000640313 IPO13O94829 963 aaKnown RBP1.15□□□□□ -2.23
VPS35-212ENST00000640313 HKR1P10072 659 aa1.15□□□□□ -2.23
VPS35-212ENST00000640313 GNAT1P11488 350 aa1.15□□□□□ -2.23
VPS35-212ENST00000640313 ECE1P42892 770 aa1.15□□□□□ -2.23
VPS35-212ENST00000640313 GFRA1P56159 465 aa1.15□□□□□ -2.23
VPS35-212ENST00000640313 EIF6P56537 245 aaKnown RBP1.15□□□□□ -2.23
VPS35-212ENST00000640313 SESN2P58004 480 aaPredicted RBP1.15□□□□□ -2.23
VPS35-212ENST00000640313 ADAM8P78325 824 aa1.15□□□□□ -2.23
VPS35-212ENST00000640313 BLOC1S1P78537 153 aa1.15□□□□□ -2.23
VPS35-212ENST00000640313 MOGSQ13724 837 aa1.15□□□□□ -2.23
VPS35-212ENST00000640313 NCAPHQ15003 741 aa1.15□□□□□ -2.23
VPS35-212ENST00000640313 SF1Q15637 639 aaKnown RBP1.15□□□□□ -2.23
VPS35-212ENST00000640313 PRSS53Q2L4Q9 553 aa1.15□□□□□ -2.23
VPS35-212ENST00000640313 DCAF17Q5H9S7 520 aaPredicted RBP1.15□□□□□ -2.23
VPS35-212ENST00000640313 METTL24Q5JXM2 366 aa1.15□□□□□ -2.23
VPS35-212ENST00000640313 KIAA1614Q5VZ46 1190 aa1.15□□□□□ -2.23
VPS35-212ENST00000640313 BTBD8Q5XKL5 378 aa1.15□□□□□ -2.23
VPS35-212ENST00000640313 GRAMD4Q6IC98 578 aa1.15□□□□□ -2.23
VPS35-212ENST00000640313 RSPO2Q6UXX9 243 aaPredicted RBP1.15□□□□□ -2.23
VPS35-212ENST00000640313 ZNF517Q6ZMY9 492 aaPredicted RBP1.15□□□□□ -2.23
VPS35-212ENST00000640313 OTOP2Q7RTS6 562 aa1.15□□□□□ -2.23
VPS35-212ENST00000640313 CXorf67Q86X51 503 aaPredicted RBP1.15□□□□□ -2.23
VPS35-212ENST00000640313 SH2D3CQ8N5H7 860 aa1.15□□□□□ -2.23
VPS35-212ENST00000640313 TMEM145Q8NBT3 493 aa1.15□□□□□ -2.23
VPS35-212ENST00000640313 CPT1CQ8TCG5 803 aa1.15□□□□□ -2.23
VPS35-212ENST00000640313 SH3RF2Q8TEC5 729 aa1.15□□□□□ -2.23
VPS35-212ENST00000640313 ZBTB9Q96C00 473 aa1.15□□□□□ -2.23
VPS35-212ENST00000640313 SLC7A6OSQ96CW6 309 aaPredicted RBP1.15□□□□□ -2.23
VPS35-212ENST00000640313 TCF25Q9BQ70 676 aa1.15□□□□□ -2.23
VPS35-212ENST00000640313 LGR4Q9BXB1 951 aa1.15□□□□□ -2.23
VPS35-212ENST00000640313 SLC46A2Q9BY10 475 aa1.15□□□□□ -2.23
VPS35-212ENST00000640313 OR10A5Q9H207 317 aa1.15□□□□□ -2.23
VPS35-212ENST00000640313 SEMA4GQ9NTN9 838 aa1.15□□□□□ -2.23
VPS35-212ENST00000640313 BTBD7Q9P203 1132 aa1.15□□□□□ -2.23
VPS35-212ENST00000640313 PPARGC1AQ9UBK2 798 aaKnown RBP1.15□□□□□ -2.23
VPS35-212ENST00000640313 SORCS3Q9UPU3 1222 aa1.15□□□□□ -2.23
VPS35-212ENST00000640313 SALL3Q9BXA9 1300 aa1.15□□□□□ -2.23
VPS35-212ENST00000640313 LOC107983988A0A1B0GUW6 1196 aaPredicted RBP1.14□□□□□ -2.23
VPS35-212ENST00000640313 SERINC4A6NH21 518 aa1.14□□□□□ -2.23
VPS35-212ENST00000640313 FAM90A27PA6NNH2 459 aa1.14□□□□□ -2.23
VPS35-212ENST00000640313 AHRRA9YTQ3 701 aa1.14□□□□□ -2.23
VPS35-212ENST00000640313 ERVV-2B6SEH9 535 aa1.14□□□□□ -2.23
VPS35-212ENST00000640313 MSCO60682 206 aa1.14□□□□□ -2.23
VPS35-212ENST00000640313 H2AFYO75367 372 aaKnown RBP1.14□□□□□ -2.23
VPS35-212ENST00000640313 C1QL1O75973 258 aa1.14□□□□□ -2.23
VPS35-212ENST00000640313 SCAF4O95104 1147 aaKnown RBP1.14□□□□□ -2.23
VPS35-212ENST00000640313 ESRRBO95718 433 aa1.14□□□□□ -2.23
VPS35-212ENST00000640313 MPIG6BO95866 241 aa1.14□□□□□ -2.23
VPS35-212ENST00000640313 GYPEP15421 78 aa1.14□□□□□ -2.23
VPS35-212ENST00000640313 PTPN1P18031 435 aaKnown RBP1.14□□□□□ -2.23
VPS35-212ENST00000640313 GRK2P25098 689 aa1.14□□□□□ -2.23
VPS35-212ENST00000640313 AOAHP28039 575 aa1.14□□□□□ -2.23
VPS35-212ENST00000640313 GRK3P35626 688 aa1.14□□□□□ -2.23
VPS35-212ENST00000640313 BMPR1AP36894 532 aa1.14□□□□□ -2.23
VPS35-212ENST00000640313 MPLP40238 635 aa1.14□□□□□ -2.23
VPS35-212ENST00000640313 STAT3P40763 770 aa1.14□□□□□ -2.23
VPS35-212ENST00000640313 KCNJ6P48051 423 aa1.14□□□□□ -2.23
VPS35-212ENST00000640313 SOX9P48436 509 aa1.14□□□□□ -2.23
VPS35-212ENST00000640313 STAT5BP51692 787 aa1.14□□□□□ -2.23
VPS35-212ENST00000640313 HERVK_113P62684 666 aa1.14□□□□□ -2.23
VPS35-212ENST00000640313 TAGLNQ01995 201 aaKnown RBP1.14□□□□□ -2.23
VPS35-212ENST00000640313 OCA2Q04671 838 aa1.14□□□□□ -2.23
VPS35-212ENST00000640313 SRSF4Q08170 494 aaKnown RBP1.14□□□□□ -2.23
VPS35-212ENST00000640313 MAP4K2Q12851 820 aa1.14□□□□□ -2.23
VPS35-212ENST00000640313 ADAM15Q13444 863 aa1.14□□□□□ -2.23
VPS35-212ENST00000640313 KIZQ2M2Z5 673 aa1.14□□□□□ -2.23
VPS35-212ENST00000640313 GAGE13Q4V321 117 aa1.14□□□□□ -2.23
VPS35-212ENST00000640313 IQSEC1Q6DN90 963 aa1.14□□□□□ -2.23
VPS35-212ENST00000640313 KLHDC10Q6PID8 442 aa1.14□□□□□ -2.23
VPS35-212ENST00000640313 LBX2Q6XYB7 198 aa1.14□□□□□ -2.23
VPS35-212ENST00000640313 ZNF227Q86WZ6 799 aa1.14□□□□□ -2.23
VPS35-212ENST00000640313 ELOA2Q8IYF1 753 aaPredicted RBP1.14□□□□□ -2.23
VPS35-212ENST00000640313 NLGN4XQ8N0W4 816 aa1.14□□□□□ -2.23
VPS35-212ENST00000640313 BCL6BQ8N143 479 aaPredicted RBP1.14□□□□□ -2.23
VPS35-212ENST00000640313 WDR48Q8TAF3 677 aa1.14□□□□□ -2.23
Retrieved 100 of 20,778 RNA–protein pairs in 27.2 ms