RNA–Protein interactions for RNA: ENST00000640036.1

SCN1A-218, Transcript of sodium voltage-gated channel alpha subunit 1, humanhuman

APPRIS ALT1 TSL 5 BASIC

Gene SCN1A, Length 8,131 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCN1A-218ENST00000640036 INPP5BP32019 993 aa5.42□□□□□ -1.54
SCN1A-218ENST00000640036 CKAP4Q07065 602 aaKnown RBP5.42□□□□□ -1.54
SCN1A-218ENST00000640036 MYSM1Q5VVJ2 828 aa5.42□□□□□ -1.54
SCN1A-218ENST00000640036 NELFCDQ8IXH7 590 aa5.42□□□□□ -1.54
SCN1A-218ENST00000640036 PPM1KQ8N3J5 372 aa5.42□□□□□ -1.54
SCN1A-218ENST00000640036 PDCD6IPQ8WUM4 868 aaKnown RBP5.42□□□□□ -1.54
SCN1A-218ENST00000640036 GPKOWQ92917 476 aaPredicted RBP eCLIP5.42□□□□□ -1.54
SCN1A-218ENST00000640036 CCDC42Q96M95 316 aa5.42□□□□□ -1.54
SCN1A-218ENST00000640036 C1QTNF7Q9BXJ2 289 aa5.42□□□□□ -1.54
SCN1A-218ENST00000640036 SLC9A3R1O14745 358 aaPredicted RBP5.42□□□□□ -1.54
SCN1A-218ENST00000640036 NCK2O43639 380 aa5.42□□□□□ -1.54
SCN1A-218ENST00000640036 GAS2O43903 313 aaKnown RBP5.42□□□□□ -1.54
SCN1A-218ENST00000640036 MYL4P12829 197 aa5.42□□□□□ -1.54
SCN1A-218ENST00000640036 IRX4P78413 519 aa5.42□□□□□ -1.54
SCN1A-218ENST00000640036 ACVR2BQ13705 512 aa5.42□□□□□ -1.54
SCN1A-218ENST00000640036 STX1AQ16623 288 aa5.42□□□□□ -1.54
SCN1A-218ENST00000640036 USP44Q9H0E7 712 aa5.42□□□□□ -1.54
SCN1A-218ENST00000640036 B3GAT3O94766 335 aa5.42□□□□□ -1.54
SCN1A-218ENST00000640036 ADH1AP07327 375 aa5.42□□□□□ -1.54
SCN1A-218ENST00000640036 HOXA7P31268 230 aaPredicted RBP5.42□□□□□ -1.54
SCN1A-218ENST00000640036 PHLDB2Q86SQ0 1253 aa5.42□□□□□ -1.54
SCN1A-218ENST00000640036 CACNA2D3Q8IZS8 1091 aa5.42□□□□□ -1.54
SCN1A-218ENST00000640036 SPC24Q8NBT2 197 aa5.42□□□□□ -1.54
SCN1A-218ENST00000640036 FLCNQ8NFG4 579 aa5.42□□□□□ -1.54
SCN1A-218ENST00000640036 TUBE1Q9UJT0 475 aa5.42□□□□□ -1.54
SCN1A-218ENST00000640036 MRPS23Q9Y3D9 190 aaKnown RBP5.42□□□□□ -1.54
SCN1A-218ENST00000640036 NR2E1Q9Y466 385 aa5.42□□□□□ -1.54
SCN1A-218ENST00000640036 CDC42BPBQ9Y5S2 1711 aa5.42□□□□□ -1.54
SCN1A-218ENST00000640036 TPRP12270 2363 aaKnown RBP5.42□□□□□ -1.54
SCN1A-218ENST00000640036 CROCC2H7BZ55 1655 aa5.41□□□□□ -1.54
SCN1A-218ENST00000640036 MEI4A8MW99 385 aa5.41□□□□□ -1.54
SCN1A-218ENST00000640036 CAVIN2O95810 425 aa5.41□□□□□ -1.54
SCN1A-218ENST00000640036 CYP2C8P10632 490 aa5.41□□□□□ -1.54
SCN1A-218ENST00000640036 HARS2P49590 506 aaKnown RBP5.41□□□□□ -1.54
SCN1A-218ENST00000640036 PEX3P56589 373 aa5.41□□□□□ -1.54
SCN1A-218ENST00000640036 ZBTB16Q05516 673 aa5.41□□□□□ -1.54
SCN1A-218ENST00000640036 VGLL4Q14135 290 aa5.41□□□□□ -1.54
SCN1A-218ENST00000640036 ACBD5Q5T8D3 534 aaPredicted RBP5.41□□□□□ -1.54
SCN1A-218ENST00000640036 RWDD4Q6NW29 188 aaKnown RBP5.41□□□□□ -1.54
SCN1A-218ENST00000640036 RNF149Q8NC42 400 aa5.41□□□□□ -1.54
SCN1A-218ENST00000640036 GLMNQ92990 594 aa5.41□□□□□ -1.54
SCN1A-218ENST00000640036 ATG4CQ96DT6 458 aa5.41□□□□□ -1.54
SCN1A-218ENST00000640036 XPO6Q96QU8 1125 aaKnown RBP5.41□□□□□ -1.54
SCN1A-218ENST00000640036 NOC4LQ9BVI4 516 aaKnown RBP5.41□□□□□ -1.54
SCN1A-218ENST00000640036 TRPM1Q7Z4N2 1603 aa5.41□□□□□ -1.54
SCN1A-218ENST00000640036 INHAP05111 366 aa5.41□□□□□ -1.54
SCN1A-218ENST00000640036 PSMC5P62195 406 aa5.41□□□□□ -1.54
SCN1A-218ENST00000640036 TDRD10Q5VZ19 366 aaKnown RBP5.41□□□□□ -1.54
SCN1A-218ENST00000640036 OTOP2Q7RTS6 562 aa5.41□□□□□ -1.54
SCN1A-218ENST00000640036 BRD9Q9H8M2 597 aa5.41□□□□□ -1.54
SCN1A-218ENST00000640036 ARMCX3Q9UH62 379 aaPredicted RBP5.41□□□□□ -1.54
SCN1A-218ENST00000640036 ANGPTL3Q9Y5C1 460 aa5.41□□□□□ -1.54
SCN1A-218ENST00000640036 NUMA1Q14980 2115 aa5.41□□□□□ -1.54
SCN1A-218ENST00000640036 TUBBP07437 444 aa5.41□□□□□ -1.54
SCN1A-218ENST00000640036 MYBP10242 640 aa5.41□□□□□ -1.54
SCN1A-218ENST00000640036 HDAC1Q13547 482 aaPredicted RBP5.41□□□□□ -1.54
SCN1A-218ENST00000640036 ARHGAP44Q17R89 818 aa5.41□□□□□ -1.54
SCN1A-218ENST00000640036 XKR3Q5GH77 459 aa5.41□□□□□ -1.54
SCN1A-218ENST00000640036 KLRG1Q96E93 195 aa5.41□□□□□ -1.54
SCN1A-218ENST00000640036 AHCYL2Q96HN2 611 aaKnown RBP5.41□□□□□ -1.54
SCN1A-218ENST00000640036 MXD3Q9BW11 206 aa5.41□□□□□ -1.54
SCN1A-218ENST00000640036 CPSF2Q9P2I0 782 aaKnown RBP5.41□□□□□ -1.54
SCN1A-218ENST00000640036 E7EWF7 191 aa5.41□□□□□ -1.54
SCN1A-218ENST00000640036 SART1O43290 800 aaKnown RBP5.41□□□□□ -1.54
SCN1A-218ENST00000640036 AOC2O75106 756 aa5.41□□□□□ -1.54
SCN1A-218ENST00000640036 CCL5P13501 91 aa5.41□□□□□ -1.54
SCN1A-218ENST00000640036 RAB27AP51159 221 aa5.41□□□□□ -1.54
SCN1A-218ENST00000640036 UBL4BQ8N7F7 174 aa5.41□□□□□ -1.54
SCN1A-218ENST00000640036 SH3KBP1Q96B97 665 aa5.41□□□□□ -1.54
SCN1A-218ENST00000640036 FBXO10Q9UK96 956 aa5.41□□□□□ -1.54
SCN1A-218ENST00000640036 STAT1P42224 750 aa5.41□□□□□ -1.54
SCN1A-218ENST00000640036 APBA1Q02410 837 aa5.41□□□□□ -1.54
SCN1A-218ENST00000640036 TMEM132DQ14C87 1099 aa5.41□□□□□ -1.54
SCN1A-218ENST00000640036 PPP1R7Q15435 360 aa5.41□□□□□ -1.54
SCN1A-218ENST00000640036 ELF2Q15723 593 aa5.41□□□□□ -1.54
SCN1A-218ENST00000640036 RNF168Q8IYW5 571 aaPredicted RBP5.41□□□□□ -1.54
SCN1A-218ENST00000640036 CSGALNACT2Q8N6G5 542 aa5.41□□□□□ -1.54
SCN1A-218ENST00000640036 GPR161Q8N6U8 529 aaKnown RBP5.41□□□□□ -1.54
SCN1A-218ENST00000640036 FAM20AQ96MK3 541 aa5.41□□□□□ -1.54
SCN1A-218ENST00000640036 CLCA2Q9UQC9 943 aa5.41□□□□□ -1.54
SCN1A-218ENST00000640036 ZC3H11BA0A1B0GUI2 810 aaPredicted RBP5.41□□□□□ -1.54
SCN1A-218ENST00000640036 KANSL1LA0AUZ9 987 aa5.41□□□□□ -1.54
SCN1A-218ENST00000640036 NR3C2P08235 984 aa5.41□□□□□ -1.54
SCN1A-218ENST00000640036 GNSP15586 552 aa5.41□□□□□ -1.54
SCN1A-218ENST00000640036 SLC26A2P50443 739 aa5.41□□□□□ -1.54
SCN1A-218ENST00000640036 SATB1Q01826 763 aa5.41□□□□□ -1.54
SCN1A-218ENST00000640036 BSPRYQ5W0U4 402 aa5.41□□□□□ -1.54
SCN1A-218ENST00000640036 LCORLQ8N3X6 602 aa5.41□□□□□ -1.54
SCN1A-218ENST00000640036 VCX3BQ9H321 246 aa5.41□□□□□ -1.54
SCN1A-218ENST00000640036 VCX3AQ9NNX9 186 aa5.41□□□□□ -1.54
SCN1A-218ENST00000640036 ELNP15502 786 aa5.4□□□□□ -1.54
SCN1A-218ENST00000640036 RPS6KB1P23443 525 aa5.4□□□□□ -1.54
SCN1A-218ENST00000640036 GPC3P51654 580 aa5.4□□□□□ -1.54
SCN1A-218ENST00000640036 NLRP11P59045 1033 aaKnown RBP5.4□□□□□ -1.54
SCN1A-218ENST00000640036 SPRYD7Q5W111 196 aa5.4□□□□□ -1.54
SCN1A-218ENST00000640036 INTS5Q6P9B9 1019 aaKnown RBP5.4□□□□□ -1.54
SCN1A-218ENST00000640036 RPGRIP1Q96KN7 1286 aa5.4□□□□□ -1.54
SCN1A-218ENST00000640036 BRD1O95696 1058 aa5.4□□□□□ -1.54
SCN1A-218ENST00000640036 NDUFB10O96000 172 aa5.4□□□□□ -1.54
SCN1A-218ENST00000640036 IVLP07476 585 aa5.4□□□□□ -1.54
Retrieved 100 of 20,778 RNA–protein pairs in 33.3 ms