RNA–Protein interactions for RNA: ENST00000639002.1

CD44-239, Transcript of CD44 molecule (Indian blood group), humanhuman

TSL 1 (best) BASIC

Gene CD44, Length 528 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD44-239ENST00000639002 PUF60Q9UHX1 559 aaKnown RBP6.36□□□□□ -1.39
CD44-239ENST00000639002 HIP1RO75146 1068 aa6.35□□□□□ -1.39
CD44-239ENST00000639002 KRT37O76014 449 aa6.35□□□□□ -1.39
CD44-239ENST00000639002 SLPIP03973 132 aa6.35□□□□□ -1.39
CD44-239ENST00000639002 ASLP04424 464 aa6.35□□□□□ -1.39
CD44-239ENST00000639002 APEX1P27695 318 aaKnown RBP6.35□□□□□ -1.39
CD44-239ENST00000639002 IGFALSP35858 605 aa6.35□□□□□ -1.39
CD44-239ENST00000639002 ANTXR2P58335 489 aa6.35□□□□□ -1.39
CD44-239ENST00000639002 NFE2L2Q16236 605 aa6.35□□□□□ -1.39
CD44-239ENST00000639002 ARHGAP44Q17R89 818 aa6.35□□□□□ -1.39
CD44-239ENST00000639002 POLNQ7Z5Q5 900 aa6.35□□□□□ -1.39
CD44-239ENST00000639002 RTKN2Q8IZC4 609 aa6.35□□□□□ -1.39
CD44-239ENST00000639002 OR14K1Q8NGZ2 314 aa6.35□□□□□ -1.39
CD44-239ENST00000639002 WDR48Q8TAF3 677 aa6.35□□□□□ -1.39
CD44-239ENST00000639002 FOXB1Q99853 325 aa6.35□□□□□ -1.39
CD44-239ENST00000639002 MAGEL2Q9UJ55 1249 aa6.35□□□□□ -1.39
CD44-239ENST00000639002 APPP05067 770 aa6.34□□□□□ -1.39
CD44-239ENST00000639002 RGS3P49796 1198 aa6.34□□□□□ -1.39
CD44-239ENST00000639002 MEOX1P50221 254 aa6.34□□□□□ -1.39
CD44-239ENST00000639002 ACAP1Q15027 740 aa6.34□□□□□ -1.39
CD44-239ENST00000639002 DDX53Q86TM3 631 aaKnown RBP6.34□□□□□ -1.39
CD44-239ENST00000639002 CHST14Q8NCH0 376 aa6.34□□□□□ -1.39
CD44-239ENST00000639002 CALML6Q8TD86 181 aa6.34□□□□□ -1.39
CD44-239ENST00000639002 SH3TC2Q8TF17 1288 aa6.34□□□□□ -1.39
CD44-239ENST00000639002 ZNF503Q96F45 646 aa6.34□□□□□ -1.39
CD44-239ENST00000639002 SORCS2Q96PQ0 1159 aa6.34□□□□□ -1.39
CD44-239ENST00000639002 PLA2G3Q9NZ20 509 aa6.34□□□□□ -1.39
CD44-239ENST00000639002 CTDP1Q9Y5B0 961 aaPredicted RBP6.34□□□□□ -1.39
CD44-239ENST00000639002 PTPDC1A2A3K4 754 aa6.33□□□□□ -1.4
CD44-239ENST00000639002 PRLP01236 227 aa6.33□□□□□ -1.4
CD44-239ENST00000639002 RPS19P39019 145 aaKnown RBP6.33□□□□□ -1.4
CD44-239ENST00000639002 FNTBP49356 437 aa6.33□□□□□ -1.4
CD44-239ENST00000639002 KIF11P52732 1056 aa6.33□□□□□ -1.4
CD44-239ENST00000639002 ADAM15Q13444 863 aa6.33□□□□□ -1.4
CD44-239ENST00000639002 FOXE3Q13461 319 aa6.33□□□□□ -1.4
CD44-239ENST00000639002 SAFB2Q14151 953 aaKnown RBP eCLIP6.33□□□□□ -1.4
CD44-239ENST00000639002 USP39Q53GS9 565 aaKnown RBP6.33□□□□□ -1.4
CD44-239ENST00000639002 CREB3L3Q68CJ9 461 aa6.33□□□□□ -1.4
CD44-239ENST00000639002 IGFL4Q6B9Z1 124 aa6.33□□□□□ -1.4
CD44-239ENST00000639002 RNF207Q6ZRF8 634 aa6.33□□□□□ -1.4
CD44-239ENST00000639002 ZNF808Q8N4W9 903 aaPredicted RBP6.33□□□□□ -1.4
CD44-239ENST00000639002 C16orf92Q96LL3 132 aa6.33□□□□□ -1.4
CD44-239ENST00000639002 TMEM260Q9NX78 707 aa6.33□□□□□ -1.4
CD44-239ENST00000639002 PMS2P1A4D2B8 440 aa6.32□□□□□ -1.4
CD44-239ENST00000639002 B4E1Z4 1266 aa6.32□□□□□ -1.4
CD44-239ENST00000639002 OPA1O60313 960 aa6.32□□□□□ -1.4
CD44-239ENST00000639002 PTX3P26022 381 aaPredicted RBP6.32□□□□□ -1.4
CD44-239ENST00000639002 MSX2P35548 267 aaPredicted RBP6.32□□□□□ -1.4
CD44-239ENST00000639002 STAT3P40763 770 aa6.32□□□□□ -1.4
CD44-239ENST00000639002 SLC6A3Q01959 620 aa6.32□□□□□ -1.4
CD44-239ENST00000639002 CCDC144BQ3MJ40 725 aa6.32□□□□□ -1.4
CD44-239ENST00000639002 MIIPQ5JXC2 388 aa6.32□□□□□ -1.4
CD44-239ENST00000639002 ZFPM1Q8IX07 1006 aa6.32□□□□□ -1.4
CD44-239ENST00000639002 PIF1Q9H611 641 aa6.32□□□□□ -1.4
CD44-239ENST00000639002 ZSWIM4Q9H7M6 989 aa6.32□□□□□ -1.4
CD44-239ENST00000639002 B4GALT6Q9UBX8 382 aa6.32□□□□□ -1.4
CD44-239ENST00000639002 FAM184BQ9ULE4 1060 aa6.32□□□□□ -1.4
CD44-239ENST00000639002 C2orf78A6NCI8 922 aa6.31□□□□□ -1.4
CD44-239ENST00000639002 FAM83GA6ND36 823 aa6.31□□□□□ -1.4
CD44-239ENST00000639002 SLC26A4O43511 780 aa6.31□□□□□ -1.4
CD44-239ENST00000639002 FZD7O75084 574 aa6.31□□□□□ -1.4
CD44-239ENST00000639002 ADAM8P78325 824 aa6.31□□□□□ -1.4
CD44-239ENST00000639002 DGCR2P98153 550 aa6.31□□□□□ -1.4
CD44-239ENST00000639002 GRM7Q14831 915 aa6.31□□□□□ -1.4
CD44-239ENST00000639002 NRN1LQ496H8 165 aa6.31□□□□□ -1.4
CD44-239ENST00000639002 PIK3R6Q5UE93 754 aa6.31□□□□□ -1.4
CD44-239ENST00000639002 SPTY2D1Q68D10 685 aaPredicted RBP6.31□□□□□ -1.4
CD44-239ENST00000639002 CDCA2Q69YH5 1023 aaPredicted RBP6.31□□□□□ -1.4
CD44-239ENST00000639002 IL17DQ8TAD2 202 aa6.31□□□□□ -1.4
CD44-239ENST00000639002 MRFAP1L1Q96HT8 127 aa6.31□□□□□ -1.4
CD44-239ENST00000639002 MAML3Q96JK9 1138 aa6.31□□□□□ -1.4
CD44-239ENST00000639002 MSL2Q9HCI7 577 aa6.31□□□□□ -1.4
CD44-239ENST00000639002 ACSS2Q9NR19 701 aa6.31□□□□□ -1.4
CD44-239ENST00000639002 SRRDQ9UH36 339 aa6.31□□□□□ -1.4
CD44-239ENST00000639002 HS3ST3A1Q9Y663 406 aa6.31□□□□□ -1.4
CD44-239ENST00000639002 CBX4O00257 560 aa6.3□□□□□ -1.4
CD44-239ENST00000639002 RFPL3O75679 317 aa6.3□□□□□ -1.4
CD44-239ENST00000639002 ASMTLO95671 621 aa6.3□□□□□ -1.4
CD44-239ENST00000639002 JMJD7P0C870 316 aa6.3□□□□□ -1.4
CD44-239ENST00000639002 GDF5P43026 501 aa6.3□□□□□ -1.4
CD44-239ENST00000639002 ADCY7P51828 1080 aa6.3□□□□□ -1.4
CD44-239ENST00000639002 ATP2C1P98194 919 aaPredicted RBP6.3□□□□□ -1.4
CD44-239ENST00000639002 PABPC4Q13310 644 aaKnown RBP eCLIP6.3□□□□□ -1.4
CD44-239ENST00000639002 KIAA1958Q8N8K9 716 aa6.3□□□□□ -1.4
CD44-239ENST00000639002 SHCBP1Q8NEM2 672 aa6.3□□□□□ -1.4
CD44-239ENST00000639002 NKD2Q969F2 451 aaPredicted RBP6.3□□□□□ -1.4
CD44-239ENST00000639002 PCED1AQ9H1Q7 454 aa6.3□□□□□ -1.4
CD44-239ENST00000639002 NELFAQ9H3P2 528 aa6.3□□□□□ -1.4
CD44-239ENST00000639002 VWA7Q9Y334 891 aa6.3□□□□□ -1.4
CD44-239ENST00000639002 NPIPB8E9PQR5 432 aa6.29□□□□□ -1.4
CD44-239ENST00000639002 CYR61O00622 381 aa6.29□□□□□ -1.4
CD44-239ENST00000639002 SLC9A1P19634 815 aa6.29□□□□□ -1.4
CD44-239ENST00000639002 KLF10Q13118 480 aa6.29□□□□□ -1.4
CD44-239ENST00000639002 RIN1Q13671 783 aa6.29□□□□□ -1.4
CD44-239ENST00000639002 MYBPC3Q14896 1274 aa6.29□□□□□ -1.4
CD44-239ENST00000639002 ESRP1Q6NXG1 681 aaKnown RBP6.29□□□□□ -1.4
CD44-239ENST00000639002 KLHDC10Q6PID8 442 aa6.29□□□□□ -1.4
CD44-239ENST00000639002 RABGGTAQ92696 567 aa6.29□□□□□ -1.4
CD44-239ENST00000639002 TMEM176AQ96HP8 235 aa6.29□□□□□ -1.4
CD44-239ENST00000639002 RNPC3Q96LT9 517 aaKnown RBP6.29□□□□□ -1.4
Retrieved 100 of 20,778 RNA–protein pairs in 142.4 ms