RNA–Protein interactions for RNA: ENST00000637699.1

CLN3-262, Transcript of CLN3, battenin, humanhuman

TSL 2

Gene CLN3, Length 1,228 nt, Biotype nonsense mediated decay, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-262ENST00000637699 BARHL2Q9NY43 387 aa22.05■■□□□ 1.12
CLN3-262ENST00000637699 ZDBF2Q9HCK1 2354 aa22.04■■□□□ 1.12
CLN3-262ENST00000637699 FSCN2O14926 492 aa22.04■■□□□ 1.12
CLN3-262ENST00000637699 DHX15O43143 795 aaKnown RBP22.04■■□□□ 1.12
CLN3-262ENST00000637699 ATF7P17544 494 aaPredicted RBP22.04■■□□□ 1.12
CLN3-262ENST00000637699 CLK2P49760 499 aaKnown RBP22.04■■□□□ 1.12
CLN3-262ENST00000637699 PTPN5P54829 565 aa22.04■■□□□ 1.12
CLN3-262ENST00000637699 PKN1Q16512 942 aa22.04■■□□□ 1.12
CLN3-262ENST00000637699 PLPP4Q5VZY2 271 aa22.04■■□□□ 1.12
CLN3-262ENST00000637699 PDE12Q6L8Q7 609 aaKnown RBP22.04■■□□□ 1.12
CLN3-262ENST00000637699 FBXL6Q8N531 539 aa22.04■■□□□ 1.12
CLN3-262ENST00000637699 APOL5Q9BWW9 433 aa22.04■■□□□ 1.12
CLN3-262ENST00000637699 FSD2A1L4K1 749 aa22.03■■□□□ 1.12
CLN3-262ENST00000637699 hCG_1984214I3L0E3 225 aa22.03■■□□□ 1.12
CLN3-262ENST00000637699 IPO5O00410 1097 aaKnown RBP22.03■■□□□ 1.12
CLN3-262ENST00000637699 C22orf31O95567 290 aa22.03■■□□□ 1.12
CLN3-262ENST00000637699 LAG3P18627 525 aa22.03■■□□□ 1.12
CLN3-262ENST00000637699 TECP42680 631 aa22.03■■□□□ 1.12
CLN3-262ENST00000637699 FAM189BP81408 668 aa22.03■■□□□ 1.12
CLN3-262ENST00000637699 LLGL2Q6P1M3 1020 aa22.03■■□□□ 1.12
CLN3-262ENST00000637699 ZNF713Q8N859 430 aaPredicted RBP22.03■■□□□ 1.12
CLN3-262ENST00000637699 GLT8D2Q9H1C3 349 aa22.03■■□□□ 1.12
CLN3-262ENST00000637699 PUF60Q9UHX1 559 aaKnown RBP22.03■■□□□ 1.12
CLN3-262ENST00000637699 IGLV3-22A0A075B6J6 115 aa22.02■■□□□ 1.12
CLN3-262ENST00000637699 GPR32O75388 356 aa22.02■■□□□ 1.12
CLN3-262ENST00000637699 SRGAP2BP0DMP2 458 aa22.02■■□□□ 1.12
CLN3-262ENST00000637699 SIGLEC14Q08ET2 396 aa22.02■■□□□ 1.12
CLN3-262ENST00000637699 DSC3Q14574 896 aa22.02■■□□□ 1.12
CLN3-262ENST00000637699 RNF20Q5VTR2 975 aa22.02■■□□□ 1.12
CLN3-262ENST00000637699 BBXQ8WY36 941 aaPredicted RBP22.02■■□□□ 1.12
CLN3-262ENST00000637699 MRPS27Q92552 414 aaKnown RBP22.02■■□□□ 1.12
CLN3-262ENST00000637699 TCF25Q9BQ70 676 aa22.02■■□□□ 1.12
CLN3-262ENST00000637699 ZNF577Q9BSK1 485 aa22.02■■□□□ 1.12
CLN3-262ENST00000637699 S1PR5Q9H228 398 aa22.02■■□□□ 1.12
CLN3-262ENST00000637699 ELAC1Q9H777 363 aaKnown RBP22.02■■□□□ 1.12
CLN3-262ENST00000637699 ENTPD7Q9NQZ7 604 aa22.02■■□□□ 1.12
CLN3-262ENST00000637699 GOLGA8AA7E2F4 631 aa22.01■■□□□ 1.11
CLN3-262ENST00000637699 GOLGA8BA8MQT2 603 aa22.01■■□□□ 1.11
CLN3-262ENST00000637699 SP100P23497 879 aaPredicted RBP22.01■■□□□ 1.11
CLN3-262ENST00000637699 CLCN3P51790 818 aa22.01■■□□□ 1.11
CLN3-262ENST00000637699 EXOSC10Q01780 885 aaKnown RBP22.01■■□□□ 1.11
CLN3-262ENST00000637699 ANKRD54Q6NXT1 300 aa22.01■■□□□ 1.11
CLN3-262ENST00000637699 TMEM184AQ6ZMB5 413 aa22.01■■□□□ 1.11
CLN3-262ENST00000637699 LRRC55Q6ZSA7 311 aa22.01■■□□□ 1.11
CLN3-262ENST00000637699 CASD1Q96PB1 797 aa22.01■■□□□ 1.11
CLN3-262ENST00000637699 PRRX2Q99811 253 aa22.01■■□□□ 1.11
CLN3-262ENST00000637699 TMEM117Q9H0C3 514 aa22.01■■□□□ 1.11
CLN3-262ENST00000637699 NAP1L2Q9ULW6 460 aaPredicted RBP22.01■■□□□ 1.11
CLN3-262ENST00000637699 LZTS1Q9Y250 596 aa22.01■■□□□ 1.11
CLN3-262ENST00000637699 MAFBQ9Y5Q3 323 aaPredicted RBP22.01■■□□□ 1.11
CLN3-262ENST00000637699 KLF18A0A0U1RQI7 1052 aa22■■□□□ 1.11
CLN3-262ENST00000637699 HIDE1A8MVS5 230 aa22■■□□□ 1.11
CLN3-262ENST00000637699 CDC27P30260 824 aa22■■□□□ 1.11
CLN3-262ENST00000637699 PBX3P40426 434 aa22■■□□□ 1.11
CLN3-262ENST00000637699 PLCB3Q01970 1234 aa22■■□□□ 1.11
CLN3-262ENST00000637699 TCF15Q12870 199 aa22■■□□□ 1.11
CLN3-262ENST00000637699 KCNC3Q14003 757 aa22■■□□□ 1.11
CLN3-262ENST00000637699 SYCE2Q6PIF2 218 aa22■■□□□ 1.11
CLN3-262ENST00000637699 KCNT2Q6UVM3 1135 aa22■■□□□ 1.11
CLN3-262ENST00000637699 DHX32Q7L7V1 743 aaKnown RBP22■■□□□ 1.11
CLN3-262ENST00000637699 FAM217BQ9NTX9 383 aaPredicted RBP22■■□□□ 1.11
CLN3-262ENST00000637699 TBC1D22BQ9NU19 505 aa22■■□□□ 1.11
CLN3-262ENST00000637699 TCEAL9Q9UHQ7 104 aa22■■□□□ 1.11
CLN3-262ENST00000637699 AKT3Q9Y243 479 aa22■■□□□ 1.11
CLN3-262ENST00000637699 ADAMTS3O15072 1205 aa21.99■■□□□ 1.11
CLN3-262ENST00000637699 CYP3A4P08684 503 aa21.99■■□□□ 1.11
CLN3-262ENST00000637699 VCPP55072 806 aaKnown RBP21.99■■□□□ 1.11
CLN3-262ENST00000637699 NLRP11P59045 1033 aaKnown RBP21.99■■□□□ 1.11
CLN3-262ENST00000637699 PTPN21Q16825 1174 aa21.99■■□□□ 1.11
CLN3-262ENST00000637699 ZNF746Q6NUN9 644 aaPredicted RBP21.99■■□□□ 1.11
CLN3-262ENST00000637699 ZBTB33Q86T24 672 aa21.99■■□□□ 1.11
CLN3-262ENST00000637699 ABI1Q8IZP0 508 aa21.99■■□□□ 1.11
CLN3-262ENST00000637699 RNF169Q8NCN4 708 aa21.99■■□□□ 1.11
CLN3-262ENST00000637699 CRYGNQ8WXF5 182 aa21.99■■□□□ 1.11
CLN3-262ENST00000637699 ASIC4Q96FT7 647 aa21.99■■□□□ 1.11
CLN3-262ENST00000637699 ZNF668Q96K58 619 aaPredicted RBP21.99■■□□□ 1.11
CLN3-262ENST00000637699 ZNF558Q96NG5 402 aa21.99■■□□□ 1.11
CLN3-262ENST00000637699 NGRNQ9NPE2 291 aaKnown RBP21.99■■□□□ 1.11
CLN3-262ENST00000637699 RNF19AQ9NV58 838 aa21.99■■□□□ 1.11
CLN3-262ENST00000637699 GABBR1Q9UBS5 961 aa21.99■■□□□ 1.11
CLN3-262ENST00000637699 USP34Q70CQ2 3546 aa21.99■■□□□ 1.11
CLN3-262ENST00000637699 MYH9P35579 1960 aaKnown RBP21.98■■□□□ 1.11
CLN3-262ENST00000637699 HOXA2O43364 376 aa21.98■■□□□ 1.11
CLN3-262ENST00000637699 PSAPP07602 524 aa21.98■■□□□ 1.11
CLN3-262ENST00000637699 ZSCAN20P17040 1043 aaPredicted RBP21.98■■□□□ 1.11
CLN3-262ENST00000637699 ADD1P35611 737 aaKnown RBP21.98■■□□□ 1.11
CLN3-262ENST00000637699 KRT17Q04695 432 aa21.98■■□□□ 1.11
CLN3-262ENST00000637699 PFKFB3Q16875 520 aaPredicted RBP21.98■■□□□ 1.11
CLN3-262ENST00000637699 EFCAB12Q6NXP0 572 aa21.98■■□□□ 1.11
CLN3-262ENST00000637699 TMC7Q7Z402 723 aa21.98■■□□□ 1.11
CLN3-262ENST00000637699 RASGRP4Q8TDF6 673 aa21.98■■□□□ 1.11
CLN3-262ENST00000637699 CEP131Q9UPN4 1083 aa21.98■■□□□ 1.11
CLN3-262ENST00000637699 SAMM50Q9Y512 469 aa21.98■■□□□ 1.11
CLN3-262ENST00000637699 PCDHA10Q9Y5I2 948 aa21.98■■□□□ 1.11
CLN3-262ENST00000637699 MAGEB2O15479 319 aa21.97■■□□□ 1.11
CLN3-262ENST00000637699 SETQ01105 290 aaPredicted RBP21.97■■□□□ 1.11
CLN3-262ENST00000637699 ADCK5Q3MIX3 580 aa21.97■■□□□ 1.11
CLN3-262ENST00000637699 PRR16Q569H4 304 aa21.97■■□□□ 1.11
CLN3-262ENST00000637699 ECHDC2Q86YB7 292 aa21.97■■□□□ 1.11
CLN3-262ENST00000637699 SMAP1Q8IYB5 467 aaPredicted RBP21.97■■□□□ 1.11
Retrieved 100 of 20,778 RNA–protein pairs in 48 ms