RNA–Protein interactions for RNA: ENST00000636759.1

SCN1A-213, Transcript of sodium voltage-gated channel alpha subunit 1, humanhuman

TSL 5

Gene SCN1A, Length 3,606 nt, Biotype nonsense mediated decay, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCN1A-213ENST00000636759 SNX30Q5VWJ9 437 aa7.38□□□□□ -1.23
SCN1A-213ENST00000636759 VGLL2Q8N8G2 317 aa7.38□□□□□ -1.23
SCN1A-213ENST00000636759 GFM2Q969S9 779 aaKnown RBP7.38□□□□□ -1.23
SCN1A-213ENST00000636759 AZIN2Q96A70 460 aa7.38□□□□□ -1.23
SCN1A-213ENST00000636759 FAM136AQ96C01 138 aa7.38□□□□□ -1.23
SCN1A-213ENST00000636759 DRC3Q9H069 523 aa7.38□□□□□ -1.23
SCN1A-213ENST00000636759 ISCUQ9H1K1 167 aa7.38□□□□□ -1.23
SCN1A-213ENST00000636759 NRDE2Q9H7Z3 1164 aa7.38□□□□□ -1.23
SCN1A-213ENST00000636759 MLXIPQ9HAP2 919 aa7.38□□□□□ -1.23
SCN1A-213ENST00000636759 GJB4Q9NTQ9 266 aa7.38□□□□□ -1.23
SCN1A-213ENST00000636759 FAM217BQ9NTX9 383 aaPredicted RBP7.38□□□□□ -1.23
SCN1A-213ENST00000636759 IL1RAPL1Q9NZN1 696 aa7.38□□□□□ -1.23
SCN1A-213ENST00000636759 MAGEC2Q9UBF1 373 aaPredicted RBP7.38□□□□□ -1.23
SCN1A-213ENST00000636759 LIMA1Q9UHB6 759 aaKnown RBP7.38□□□□□ -1.23
SCN1A-213ENST00000636759 PNMA3Q9UL41 463 aa7.38□□□□□ -1.23
SCN1A-213ENST00000636759 CAPN6Q9Y6Q1 641 aa7.38□□□□□ -1.23
SCN1A-213ENST00000636759 RCCD1A6NED2 376 aa7.38□□□□□ -1.23
SCN1A-213ENST00000636759 DCDC2CA8MYV0 355 aa7.38□□□□□ -1.23
SCN1A-213ENST00000636759 BIRC5O15392 142 aa7.38□□□□□ -1.23
SCN1A-213ENST00000636759 ACTN4O43707 911 aaKnown RBP7.38□□□□□ -1.23
SCN1A-213ENST00000636759 OPHN1O60890 802 aa7.38□□□□□ -1.23
SCN1A-213ENST00000636759 CSF1RP07333 972 aa7.38□□□□□ -1.23
SCN1A-213ENST00000636759 RNASE9P60153 205 aaKnown RBP7.38□□□□□ -1.23
SCN1A-213ENST00000636759 DMPKQ09013 629 aa7.38□□□□□ -1.23
SCN1A-213ENST00000636759 DIXDC1Q155Q3 683 aa7.38□□□□□ -1.23
SCN1A-213ENST00000636759 NTRK3Q16288 839 aa7.38□□□□□ -1.23
SCN1A-213ENST00000636759 PKN1Q16512 942 aa7.38□□□□□ -1.23
SCN1A-213ENST00000636759 GALNTL6Q49A17 601 aa7.38□□□□□ -1.23
SCN1A-213ENST00000636759 POTEEQ6S8J3 1075 aa7.38□□□□□ -1.23
SCN1A-213ENST00000636759 CEP70Q8NHQ1 597 aa7.38□□□□□ -1.23
SCN1A-213ENST00000636759 SHISA4Q96DD7 197 aa7.38□□□□□ -1.23
SCN1A-213ENST00000636759 DHTKD1Q96HY7 919 aaPredicted RBP7.38□□□□□ -1.23
SCN1A-213ENST00000636759 MS4A14Q96JA4 679 aa7.38□□□□□ -1.23
SCN1A-213ENST00000636759 NOX5Q96PH1 765 aa7.38□□□□□ -1.23
SCN1A-213ENST00000636759 DNAJC7Q99615 494 aa7.38□□□□□ -1.23
SCN1A-213ENST00000636759 STMN4Q9H169 189 aaPredicted RBP7.38□□□□□ -1.23
SCN1A-213ENST00000636759 EFR3BQ9Y2G0 817 aa7.38□□□□□ -1.23
SCN1A-213ENST00000636759 SPATA31A1Q5TZJ5 1347 aa7.38□□□□□ -1.23
SCN1A-213ENST00000636759 CCDC169A6NNP5 214 aa7.38□□□□□ -1.23
SCN1A-213ENST00000636759 NCK2O43639 380 aa7.38□□□□□ -1.23
SCN1A-213ENST00000636759 ZPR1O75312 459 aa7.38□□□□□ -1.23
SCN1A-213ENST00000636759 CYP19A1P11511 503 aaPredicted RBP7.38□□□□□ -1.23
SCN1A-213ENST00000636759 IGHMBP2P38935 993 aaKnown RBP7.38□□□□□ -1.23
SCN1A-213ENST00000636759 TMED10P49755 219 aaKnown RBP7.38□□□□□ -1.23
SCN1A-213ENST00000636759 KRT72Q14CN4 511 aa7.38□□□□□ -1.23
SCN1A-213ENST00000636759 CLPPQ16740 277 aaPredicted RBP7.38□□□□□ -1.23
SCN1A-213ENST00000636759 PARP6Q2NL67 630 aa7.38□□□□□ -1.23
SCN1A-213ENST00000636759 RRAGBQ5VZM2 374 aa7.38□□□□□ -1.23
SCN1A-213ENST00000636759 LMBR1LQ6UX01 489 aa7.38□□□□□ -1.23
SCN1A-213ENST00000636759 FAM47EQ6ZV65 393 aa7.38□□□□□ -1.23
SCN1A-213ENST00000636759 CHST3Q7LGC8 479 aa7.38□□□□□ -1.23
SCN1A-213ENST00000636759 DAAM2Q86T65 1068 aa7.38□□□□□ -1.23
SCN1A-213ENST00000636759 PEX5LQ8IYB4 626 aa7.38□□□□□ -1.23
SCN1A-213ENST00000636759 FAM133AQ8N9E0 248 aa7.38□□□□□ -1.23
SCN1A-213ENST00000636759 SERBP1Q8NC51 408 aaKnown RBP eCLIP7.38□□□□□ -1.23
SCN1A-213ENST00000636759 RBM46Q8TBY0 533 aaKnown RBP7.38□□□□□ -1.23
SCN1A-213ENST00000636759 DQX1Q8TE96 717 aaKnown RBP7.38□□□□□ -1.23
SCN1A-213ENST00000636759 SCG3Q8WXD2 468 aaKnown RBP7.38□□□□□ -1.23
SCN1A-213ENST00000636759 STMN2Q93045 179 aa7.38□□□□□ -1.23
SCN1A-213ENST00000636759 ALG1Q9BT22 464 aa7.38□□□□□ -1.23
SCN1A-213ENST00000636759 MAP3K15Q6ZN16 1313 aa7.37□□□□□ -1.23
SCN1A-213ENST00000636759 PASKQ96RG2 1323 aa7.37□□□□□ -1.23
SCN1A-213ENST00000636759 EIF3FO00303 357 aaPredicted RBP7.37□□□□□ -1.23
SCN1A-213ENST00000636759 UNC5CO95185 931 aa7.37□□□□□ -1.23
SCN1A-213ENST00000636759 GALK1P51570 392 aa7.37□□□□□ -1.23
SCN1A-213ENST00000636759 GSTM4Q03013 218 aa7.37□□□□□ -1.23
SCN1A-213ENST00000636759 PLS1Q14651 629 aa7.37□□□□□ -1.23
SCN1A-213ENST00000636759 ZCWPW2Q504Y3 356 aa7.37□□□□□ -1.23
SCN1A-213ENST00000636759 PHLDB3Q6NSJ2 640 aa7.37□□□□□ -1.23
SCN1A-213ENST00000636759 MARK2Q7KZI7 788 aaKnown RBP7.37□□□□□ -1.23
SCN1A-213ENST00000636759 SMYD4Q8IYR2 804 aaPredicted RBP7.37□□□□□ -1.23
SCN1A-213ENST00000636759 EIF1ADQ8N9N8 165 aaKnown RBP7.37□□□□□ -1.23
SCN1A-213ENST00000636759 NMD3Q96D46 503 aaKnown RBP7.37□□□□□ -1.23
SCN1A-213ENST00000636759 DDX50Q9BQ39 737 aaKnown RBP7.37□□□□□ -1.23
SCN1A-213ENST00000636759 OSBPL10Q9BXB5 764 aa7.37□□□□□ -1.23
SCN1A-213ENST00000636759 MYH14Q7Z406 1995 aaKnown RBP7.37□□□□□ -1.23
SCN1A-213ENST00000636759 MAST2Q6P0Q8 1798 aa7.37□□□□□ -1.23
SCN1A-213ENST00000636759 TAF1P21675 1872 aa7.37□□□□□ -1.23
SCN1A-213ENST00000636759 TCRBV5S4A2TA0A5A2 114 aa7.37□□□□□ -1.23
SCN1A-213ENST00000636759 H0YGN5 161 aa7.37□□□□□ -1.23
SCN1A-213ENST00000636759 RAD51CO43502 376 aa7.37□□□□□ -1.23
SCN1A-213ENST00000636759 ASMTLO95671 621 aa7.37□□□□□ -1.23
SCN1A-213ENST00000636759 KCNA4P22459 653 aa7.37□□□□□ -1.23
SCN1A-213ENST00000636759 STIP1P31948 543 aaKnown RBP7.37□□□□□ -1.23
SCN1A-213ENST00000636759 IARSP41252 1262 aaKnown RBP7.37□□□□□ -1.23
SCN1A-213ENST00000636759 COG7P83436 770 aa7.37□□□□□ -1.23
SCN1A-213ENST00000636759 OCRLQ01968 901 aa7.37□□□□□ -1.23
SCN1A-213ENST00000636759 DCTN2Q13561 401 aaKnown RBP7.37□□□□□ -1.23
SCN1A-213ENST00000636759 SAFBQ15424 915 aaKnown RBP eCLIP7.37□□□□□ -1.23
SCN1A-213ENST00000636759 TRIM67Q6ZTA4 783 aa7.37□□□□□ -1.23
SCN1A-213ENST00000636759 RIBC1Q8N443 379 aaPredicted RBP7.37□□□□□ -1.23
SCN1A-213ENST00000636759 ENDOVQ8N8Q3 282 aaKnown RBP7.37□□□□□ -1.23
SCN1A-213ENST00000636759 NAT14Q8WUY8 206 aa7.37□□□□□ -1.23
SCN1A-213ENST00000636759 ARHGEF2Q92974 986 aaKnown RBP7.37□□□□□ -1.23
SCN1A-213ENST00000636759 PURBQ96QR8 312 aaKnown RBP7.37□□□□□ -1.23
SCN1A-213ENST00000636759 TUBGCP5Q96RT8 1024 aa7.37□□□□□ -1.23
SCN1A-213ENST00000636759 SH3GL1Q99961 368 aa7.37□□□□□ -1.23
SCN1A-213ENST00000636759 SH2D4AQ9H788 454 aa7.37□□□□□ -1.23
SCN1A-213ENST00000636759 FGFR1OP2Q9NVK5 253 aa7.37□□□□□ -1.23
SCN1A-213ENST00000636759 CAPN11Q9UMQ6 739 aa7.37□□□□□ -1.23
Retrieved 100 of 20,778 RNA–protein pairs in 14.2 ms