RNA–Protein interactions for RNA: ENST00000636238.1

CIITA-214, Transcript of class II major histocompatibility complex transactivator, humanhuman

TSL 5

Gene CIITA, Length 498 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CIITA-214ENST00000636238 LIFRP42702 1097 aa8.4□□□□□ -1.06
CIITA-214ENST00000636238 NBR1Q14596 966 aa8.4□□□□□ -1.06
CIITA-214ENST00000636238 SART3Q15020 963 aaKnown RBP8.4□□□□□ -1.06
CIITA-214ENST00000636238 APOA5Q6Q788 366 aa8.4□□□□□ -1.06
CIITA-214ENST00000636238 SLC24A5Q71RS6 500 aa8.4□□□□□ -1.06
CIITA-214ENST00000636238 RBM23Q86U06 439 aaKnown RBP8.4□□□□□ -1.06
CIITA-214ENST00000636238 RTN4RL1Q86UN2 441 aaPredicted RBP8.4□□□□□ -1.06
CIITA-214ENST00000636238 FCHSD1Q86WN1 690 aa8.4□□□□□ -1.06
CIITA-214ENST00000636238 MICU3Q86XE3 530 aa8.4□□□□□ -1.06
CIITA-214ENST00000636238 THNSL1Q8IYQ7 743 aa8.4□□□□□ -1.06
CIITA-214ENST00000636238 STAG2Q8N3U4 1231 aa8.4□□□□□ -1.06
CIITA-214ENST00000636238 NSUN7Q8NE18 718 aaKnown RBP8.4□□□□□ -1.06
CIITA-214ENST00000636238 MRPS27Q92552 414 aaKnown RBP8.4□□□□□ -1.06
CIITA-214ENST00000636238 GLG1Q92896 1179 aa8.4□□□□□ -1.06
CIITA-214ENST00000636238 GPKOWQ92917 476 aaPredicted RBP eCLIP8.4□□□□□ -1.06
CIITA-214ENST00000636238 RTP3Q9BQQ7 232 aa8.4□□□□□ -1.06
CIITA-214ENST00000636238 LZTS2Q9BRK4 669 aa8.4□□□□□ -1.06
CIITA-214ENST00000636238 CELF4Q9BZC1 486 aaKnown RBP8.4□□□□□ -1.06
CIITA-214ENST00000636238 ADAM7Q9H2U9 754 aa8.4□□□□□ -1.06
CIITA-214ENST00000636238 AZI2Q9H6S1 392 aa8.4□□□□□ -1.06
CIITA-214ENST00000636238 RGS18Q9NS28 235 aa8.4□□□□□ -1.06
CIITA-214ENST00000636238 DZANK1Q9NVP4 752 aa8.4□□□□□ -1.06
CIITA-214ENST00000636238 TMEM161AQ9NX61 479 aa8.4□□□□□ -1.06
CIITA-214ENST00000636238 STK39Q9UEW8 545 aa8.4□□□□□ -1.06
CIITA-214ENST00000636238 SLC12A7Q9Y666 1083 aa8.4□□□□□ -1.06
CIITA-214ENST00000636238 EPG5Q9HCE0 2579 aa8.4□□□□□ -1.07
CIITA-214ENST00000636238 MYO7AQ13402 2215 aa8.39□□□□□ -1.07
CIITA-214ENST00000636238 ZNF292O60281 2723 aa8.39□□□□□ -1.07
CIITA-214ENST00000636238 KIAA1217Q5T5P2 1943 aa8.39□□□□□ -1.07
CIITA-214ENST00000636238 GOLGA8AA7E2F4 631 aa8.39□□□□□ -1.07
CIITA-214ENST00000636238 GPR182O15218 404 aa8.39□□□□□ -1.07
CIITA-214ENST00000636238 SORBS3O60504 671 aa8.39□□□□□ -1.07
CIITA-214ENST00000636238 INSRRP14616 1297 aa8.39□□□□□ -1.07
CIITA-214ENST00000636238 SYT1P21579 422 aa8.39□□□□□ -1.07
CIITA-214ENST00000636238 CDC27P30260 824 aa8.39□□□□□ -1.07
CIITA-214ENST00000636238 TECP42680 631 aa8.39□□□□□ -1.07
CIITA-214ENST00000636238 METAP2P50579 478 aaKnown RBP eCLIP8.39□□□□□ -1.07
CIITA-214ENST00000636238 NUCB2P80303 420 aa8.39□□□□□ -1.07
CIITA-214ENST00000636238 FAM189BP81408 668 aa8.39□□□□□ -1.07
CIITA-214ENST00000636238 KRT76Q01546 638 aa8.39□□□□□ -1.07
CIITA-214ENST00000636238 KRT17Q04695 432 aa8.39□□□□□ -1.07
CIITA-214ENST00000636238 GIT2Q14161 759 aa8.39□□□□□ -1.07
CIITA-214ENST00000636238 NFKBIBQ15653 356 aa8.39□□□□□ -1.07
CIITA-214ENST00000636238 SYCE2Q6PIF2 218 aa8.39□□□□□ -1.07
CIITA-214ENST00000636238 SYNE3Q6ZMZ3 975 aa8.39□□□□□ -1.07
CIITA-214ENST00000636238 SGMS1Q86VZ5 419 aa8.39□□□□□ -1.07
CIITA-214ENST00000636238 ZNF654Q8IZM8 581 aa8.39□□□□□ -1.07
CIITA-214ENST00000636238 TMEM105Q8N8V8 129 aa8.39□□□□□ -1.07
CIITA-214ENST00000636238 COLGALT1Q8NBJ5 622 aa8.39□□□□□ -1.07
CIITA-214ENST00000636238 VN1R2Q8NFZ6 395 aa8.39□□□□□ -1.07
CIITA-214ENST00000636238 SMARCC2Q8TAQ2 1214 aa8.39□□□□□ -1.07
CIITA-214ENST00000636238 CHAMP1Q96JM3 812 aa8.39□□□□□ -1.07
CIITA-214ENST00000636238 PIGSQ96S52 555 aa8.39□□□□□ -1.07
CIITA-214ENST00000636238 SPZ1Q9BXG8 430 aa8.39□□□□□ -1.07
CIITA-214ENST00000636238 TMEM117Q9H0C3 514 aa8.39□□□□□ -1.07
CIITA-214ENST00000636238 ATP6V0A4Q9HBG4 840 aa8.39□□□□□ -1.07
CIITA-214ENST00000636238 FAM217BQ9NTX9 383 aaPredicted RBP8.39□□□□□ -1.07
CIITA-214ENST00000636238 TTC3P53804 2025 aa8.39□□□□□ -1.07
CIITA-214ENST00000636238 COL1A2P08123 1366 aa8.38□□□□□ -1.07
CIITA-214ENST00000636238 NFASCO94856 1347 aa8.38□□□□□ -1.07
CIITA-214ENST00000636238 C5orf42Q9H799 3197 aa8.38□□□□□ -1.07
CIITA-214ENST00000636238 GSTTP1A0A1W2PQM5 241 aa8.38□□□□□ -1.07
CIITA-214ENST00000636238 VPS37CA5D8V6 355 aaPredicted RBP8.38□□□□□ -1.07
CIITA-214ENST00000636238 C9IYK1 514 aa8.38□□□□□ -1.07
CIITA-214ENST00000636238 BRD1O95696 1058 aa8.38□□□□□ -1.07
CIITA-214ENST00000636238 KIF5BP33176 963 aa8.38□□□□□ -1.07
CIITA-214ENST00000636238 GNAQP50148 359 aa8.38□□□□□ -1.07
CIITA-214ENST00000636238 TROAPQ12815 778 aa8.38□□□□□ -1.07
CIITA-214ENST00000636238 MTMR1Q13613 665 aa8.38□□□□□ -1.07
CIITA-214ENST00000636238 FOXD4L6Q3SYB3 417 aaPredicted RBP8.38□□□□□ -1.07
CIITA-214ENST00000636238 PAN2Q504Q3 1202 aaKnown RBP8.38□□□□□ -1.07
CIITA-214ENST00000636238 SPOUT1Q5T280 376 aaKnown RBP8.38□□□□□ -1.07
CIITA-214ENST00000636238 LARP1BQ659C4 914 aaKnown RBP8.38□□□□□ -1.07
CIITA-214ENST00000636238 FOXD4L3Q6VB84 417 aaPredicted RBP8.38□□□□□ -1.07
CIITA-214ENST00000636238 HOMER1Q86YM7 354 aa8.38□□□□□ -1.07
CIITA-214ENST00000636238 CCDC105Q8IYK2 499 aa8.38□□□□□ -1.07
CIITA-214ENST00000636238 ADSSL1Q8N142 457 aa8.38□□□□□ -1.07
CIITA-214ENST00000636238 CMTR1Q8N1G2 835 aaKnown RBP8.38□□□□□ -1.07
CIITA-214ENST00000636238 LRRC43Q8N309 656 aa8.38□□□□□ -1.07
CIITA-214ENST00000636238 TMTC2Q8N394 836 aa8.38□□□□□ -1.07
CIITA-214ENST00000636238 TDRD5Q8NAT2 981 aaKnown RBP8.38□□□□□ -1.07
CIITA-214ENST00000636238 TCF25Q9BQ70 676 aa8.38□□□□□ -1.07
CIITA-214ENST00000636238 LLPHQ9BRT6 129 aaKnown RBP8.38□□□□□ -1.07
CIITA-214ENST00000636238 MTA3Q9BTC8 594 aa8.38□□□□□ -1.07
CIITA-214ENST00000636238 MFSD1Q9H3U5 465 aa8.38□□□□□ -1.07
CIITA-214ENST00000636238 BCAS3Q9H6U6 928 aa8.38□□□□□ -1.07
CIITA-214ENST00000636238 ERVK-5Q9HDB9 667 aa8.38□□□□□ -1.07
CIITA-214ENST00000636238 JPH1Q9HDC5 661 aaPredicted RBP8.38□□□□□ -1.07
CIITA-214ENST00000636238 TMEM260Q9NX78 707 aa8.38□□□□□ -1.07
CIITA-214ENST00000636238 UBIAD1Q9Y5Z9 338 aa8.38□□□□□ -1.07
CIITA-214ENST00000636238 IRAK3Q9Y616 596 aa8.38□□□□□ -1.07
CIITA-214ENST00000636238 NCOR2Q9Y618 2525 aa8.37□□□□□ -1.07
CIITA-214ENST00000636238 KMT2EQ8IZD2 1858 aa8.37□□□□□ -1.07
CIITA-214ENST00000636238 DENND3A2RUS2 1198 aa8.37□□□□□ -1.07
CIITA-214ENST00000636238 TBKBP1A7MCY6 615 aa8.37□□□□□ -1.07
CIITA-214ENST00000636238 CPLX1O14810 134 aa8.37□□□□□ -1.07
CIITA-214ENST00000636238 PER2O15055 1255 aa8.37□□□□□ -1.07
CIITA-214ENST00000636238 STX6O43752 255 aa8.37□□□□□ -1.07
CIITA-214ENST00000636238 RPS6KA5O75582 802 aa8.37□□□□□ -1.07
CIITA-214ENST00000636238 ZSCAN22P10073 491 aaPredicted RBP8.37□□□□□ -1.07
Retrieved 100 of 20,778 RNA–protein pairs in 39.2 ms