RNA–Protein interactions for RNA: ENST00000636172.1

CLN3-245, Transcript of CLN3, battenin, humanhuman

TSL 2

Gene CLN3, Length 1,536 nt, Biotype nonsense mediated decay, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-245ENST00000636172 POLGP54098 1239 aaPredicted RBP22.84■■□□□ 1.25
CLN3-245ENST00000636172 PPFIA1Q13136 1202 aa22.84■■□□□ 1.25
CLN3-245ENST00000636172 MAPK7Q13164 816 aa22.84■■□□□ 1.25
CLN3-245ENST00000636172 EMC2Q15006 297 aa22.84■■□□□ 1.25
CLN3-245ENST00000636172 ZNF484Q5JVG2 852 aa22.84■■□□□ 1.25
CLN3-245ENST00000636172 UNC13DQ70J99 1090 aa22.84■■□□□ 1.25
CLN3-245ENST00000636172 ATP6V0A4Q9HBG4 840 aa22.84■■□□□ 1.25
CLN3-245ENST00000636172 POLD4Q9HCU8 107 aa22.84■■□□□ 1.25
CLN3-245ENST00000636172 XPNPEP1Q9NQW7 623 aa22.84■■□□□ 1.25
CLN3-245ENST00000636172 KAT6AQ92794 2004 aa22.84■■□□□ 1.25
CLN3-245ENST00000636172 PVALEFA0A1B0GWK0 134 aa22.83■■□□□ 1.25
CLN3-245ENST00000636172 BIN1O00499 593 aa22.83■■□□□ 1.25
CLN3-245ENST00000636172 HIP1RO75146 1068 aa22.83■■□□□ 1.25
CLN3-245ENST00000636172 SMIM10L2AP0DMW4 78 aa22.83■■□□□ 1.25
CLN3-245ENST00000636172 SMIM10L2BP0DMW5 78 aa22.83■■□□□ 1.25
CLN3-245ENST00000636172 IDEP14735 1019 aa22.83■■□□□ 1.25
CLN3-245ENST00000636172 RFC5P40937 340 aa22.83■■□□□ 1.25
CLN3-245ENST00000636172 KMT5BQ4FZB7 885 aa22.83■■□□□ 1.25
CLN3-245ENST00000636172 MAEAQ7L5Y9 396 aa22.83■■□□□ 1.25
CLN3-245ENST00000636172 DAW1Q8N136 415 aa22.83■■□□□ 1.25
CLN3-245ENST00000636172 ARRDC4Q8NCT1 418 aa22.83■■□□□ 1.25
CLN3-245ENST00000636172 PPP1R13LQ8WUF5 828 aa22.83■■□□□ 1.25
CLN3-245ENST00000636172 ODF2LQ9ULJ1 636 aa22.83■■□□□ 1.25
CLN3-245ENST00000636172 MYH11P35749 1972 aa22.83■■□□□ 1.24
CLN3-245ENST00000636172 MAFO75444 373 aaPredicted RBP22.82■■□□□ 1.24
CLN3-245ENST00000636172 ACLYP53396 1101 aa22.82■■□□□ 1.24
CLN3-245ENST00000636172 IGBP1P78318 339 aa22.82■■□□□ 1.24
CLN3-245ENST00000636172 EHHADHQ08426 723 aa22.82■■□□□ 1.24
CLN3-245ENST00000636172 TBC1D8BQ0IIM8 1120 aa22.82■■□□□ 1.24
CLN3-245ENST00000636172 KCNB1Q14721 858 aa22.82■■□□□ 1.24
CLN3-245ENST00000636172 GRIK4Q16099 956 aa22.82■■□□□ 1.24
CLN3-245ENST00000636172 SLC7A3Q8WY07 619 aa22.82■■□□□ 1.24
CLN3-245ENST00000636172 TSEN34Q9BSV6 310 aaKnown RBP22.82■■□□□ 1.24
CLN3-245ENST00000636172 TIPINQ9BVW5 301 aa22.82■■□□□ 1.24
CLN3-245ENST00000636172 PANK4Q9NVE7 773 aa22.82■■□□□ 1.24
CLN3-245ENST00000636172 MOXD2PA6NHM9 499 aa22.82■■□□□ 1.24
CLN3-245ENST00000636172 TBCAO75347 108 aaKnown RBP22.82■■□□□ 1.24
CLN3-245ENST00000636172 C22orf31O95567 290 aa22.82■■□□□ 1.24
CLN3-245ENST00000636172 ZNF131P52739 623 aa22.82■■□□□ 1.24
CLN3-245ENST00000636172 SOX10P56693 466 aa22.82■■□□□ 1.24
CLN3-245ENST00000636172 COASYQ13057 564 aa22.82■■□□□ 1.24
CLN3-245ENST00000636172 ISM2Q6H9L7 571 aa22.82■■□□□ 1.24
CLN3-245ENST00000636172 CCDC65Q8IXS2 484 aa22.82■■□□□ 1.24
CLN3-245ENST00000636172 MCPH1Q8NEM0 835 aa22.82■■□□□ 1.24
CLN3-245ENST00000636172 FUCA2Q9BTY2 467 aa22.82■■□□□ 1.24
CLN3-245ENST00000636172 GPRC5CQ9NQ84 441 aa22.82■■□□□ 1.24
CLN3-245ENST00000636172 EXOC1Q9NV70 894 aa22.82■■□□□ 1.24
CLN3-245ENST00000636172 RMND1Q9NWS8 449 aa22.82■■□□□ 1.24
CLN3-245ENST00000636172 OGDHLQ9ULD0 1010 aa22.82■■□□□ 1.24
CLN3-245ENST00000636172 IGKV6-21A0A0C4DH24 114 aa22.81■■□□□ 1.24
CLN3-245ENST00000636172 RHOBTB3O94955 611 aa22.81■■□□□ 1.24
CLN3-245ENST00000636172 BMP6P22004 513 aa22.81■■□□□ 1.24
CLN3-245ENST00000636172 MORC3Q14149 939 aa22.81■■□□□ 1.24
CLN3-245ENST00000636172 MARCH8Q5T0T0 291 aa22.81■■□□□ 1.24
CLN3-245ENST00000636172 FAM102BQ5T8I3 360 aa22.81■■□□□ 1.24
CLN3-245ENST00000636172 SASS6Q6UVJ0 657 aa22.81■■□□□ 1.24
CLN3-245ENST00000636172 LMBR1Q8WVP7 490 aa22.81■■□□□ 1.24
CLN3-245ENST00000636172 ZBTB10Q96DT7 871 aa22.81■■□□□ 1.24
CLN3-245ENST00000636172 ZHX3Q9H4I2 956 aa22.81■■□□□ 1.24
CLN3-245ENST00000636172 SETD4Q9NVD3 440 aa22.81■■□□□ 1.24
CLN3-245ENST00000636172 NRCAMQ92823 1304 aa22.8■■□□□ 1.24
CLN3-245ENST00000636172 RRN3P2A6NIE6 340 aa22.8■■□□□ 1.24
CLN3-245ENST00000636172 SFI1A8K8P3 1242 aa22.8■■□□□ 1.24
CLN3-245ENST00000636172 CABYRO75952 493 aa22.8■■□□□ 1.24
CLN3-245ENST00000636172 FAM13AO94988 1023 aa22.8■■□□□ 1.24
CLN3-245ENST00000636172 TYRO3Q06418 890 aa22.8■■□□□ 1.24
CLN3-245ENST00000636172 HIC1Q14526 733 aa22.8■■□□□ 1.24
CLN3-245ENST00000636172 NBPF20Q3BBV1 942 aa22.8■■□□□ 1.24
CLN3-245ENST00000636172 TRIML1Q8N9V2 468 aa22.8■■□□□ 1.24
CLN3-245ENST00000636172 HPS3Q969F9 1004 aa22.8■■□□□ 1.24
CLN3-245ENST00000636172 DRC1Q96MC2 740 aa22.8■■□□□ 1.24
CLN3-245ENST00000636172 PARVGQ9HBI0 331 aa22.8■■□□□ 1.24
CLN3-245ENST00000636172 COL4A3BPQ9Y5P4 624 aa22.8■■□□□ 1.24
CLN3-245ENST00000636172 DNM1LO00429 736 aa22.79■■□□□ 1.24
CLN3-245ENST00000636172 GJB1P08034 283 aa22.79■■□□□ 1.24
CLN3-245ENST00000636172 GAP43P17677 238 aa22.79■■□□□ 1.24
CLN3-245ENST00000636172 KLRC1P26715 233 aa22.79■■□□□ 1.24
CLN3-245ENST00000636172 HOXC8P31273 242 aa22.79■■□□□ 1.24
CLN3-245ENST00000636172 ZNF445P59923 1031 aa22.79■■□□□ 1.24
CLN3-245ENST00000636172 HERC4Q5GLZ8 1057 aaPredicted RBP22.79■■□□□ 1.24
CLN3-245ENST00000636172 MTHFD1LQ6UB35 978 aa22.79■■□□□ 1.24
CLN3-245ENST00000636172 SFR1Q86XK3 245 aa22.79■■□□□ 1.24
CLN3-245ENST00000636172 EXOC8Q8IYI6 725 aa22.79■■□□□ 1.24
CLN3-245ENST00000636172 C7orf31Q8N865 590 aa22.79■■□□□ 1.24
CLN3-245ENST00000636172 KIFAP3Q92845 792 aa22.79■■□□□ 1.24
CLN3-245ENST00000636172 CCDC47Q96A33 483 aaKnown RBP22.79■■□□□ 1.24
CLN3-245ENST00000636172 TMEM143Q96AN5 459 aa22.79■■□□□ 1.24
CLN3-245ENST00000636172 ANP32EQ9BTT0 268 aa22.79■■□□□ 1.24
CLN3-245ENST00000636172 MCOLN1Q9GZU1 580 aa22.79■■□□□ 1.24
CLN3-245ENST00000636172 CRISPLD2Q9H0B8 497 aa22.79■■□□□ 1.24
CLN3-245ENST00000636172 HDAC6Q9UBN7 1215 aa22.79■■□□□ 1.24
CLN3-245ENST00000636172 PHF24Q9UPV7 400 aa22.79■■□□□ 1.24
CLN3-245ENST00000636172 EVPLQ92817 2033 aa22.79■■□□□ 1.24
CLN3-245ENST00000636172 GRIN2DO15399 1336 aa22.78■■□□□ 1.24
CLN3-245ENST00000636172 KBTBD13C9JR72 458 aa22.78■■□□□ 1.24
CLN3-245ENST00000636172 MAGEB2O15479 319 aa22.78■■□□□ 1.24
CLN3-245ENST00000636172 NLRP12P59046 1061 aa22.78■■□□□ 1.24
CLN3-245ENST00000636172 MKRN4PQ13434 485 aaPredicted RBP22.78■■□□□ 1.24
CLN3-245ENST00000636172 DRP2Q13474 957 aa22.78■■□□□ 1.24
CLN3-245ENST00000636172 LRRC71Q8N4P6 559 aa22.78■■□□□ 1.24
Retrieved 100 of 20,778 RNA–protein pairs in 35.9 ms