RNA–Protein interactions for RNA: ENST00000628023.3

CLN3-239, Transcript of CLN3, battenin, humanhuman

TSL 5

Gene CLN3, Length 1,183 nt, Biotype nonsense mediated decay, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-239ENST00000628023 CAND2O75155 1236 aa20.2■□□□□ 0.82
CLN3-239ENST00000628023 MED24O75448 989 aa20.2■□□□□ 0.82
CLN3-239ENST00000628023 PARNO95453 639 aaKnown RBP20.2■□□□□ 0.82
CLN3-239ENST00000628023 C22orf31O95567 290 aa20.2■□□□□ 0.82
CLN3-239ENST00000628023 BRD1O95696 1058 aa20.2■□□□□ 0.82
CLN3-239ENST00000628023 MARCKSP29966 332 aaPredicted RBP20.2■□□□□ 0.82
CLN3-239ENST00000628023 RBL2Q08999 1139 aa20.2■□□□□ 0.82
CLN3-239ENST00000628023 STK38Q15208 465 aa20.2■□□□□ 0.82
CLN3-239ENST00000628023 TRIM71Q2Q1W2 868 aaKnown RBP20.2■□□□□ 0.82
CLN3-239ENST00000628023 XKR9Q5GH70 373 aa20.2■□□□□ 0.82
CLN3-239ENST00000628023 TJAP1Q5JTD0 557 aa20.2■□□□□ 0.82
CLN3-239ENST00000628023 ANO5Q75V66 913 aa20.2■□□□□ 0.82
CLN3-239ENST00000628023 CATSPER3Q86XQ3 398 aa20.2■□□□□ 0.82
CLN3-239ENST00000628023 USP38Q8NB14 1042 aa20.2■□□□□ 0.82
CLN3-239ENST00000628023 PHOSPHO2Q8TCD6 241 aa20.2■□□□□ 0.82
CLN3-239ENST00000628023 VWCEQ96DN2 955 aa20.2■□□□□ 0.82
CLN3-239ENST00000628023 CEP170P1Q96L14 293 aa20.2■□□□□ 0.82
CLN3-239ENST00000628023 NIFKQ9BYG3 293 aaKnown RBP20.2■□□□□ 0.82
CLN3-239ENST00000628023 TSPYL2Q9H2G4 693 aaPredicted RBP20.2■□□□□ 0.82
CLN3-239ENST00000628023 MYH15Q9Y2K3 1946 aa20.19■□□□□ 0.82
CLN3-239ENST00000628023 SMIM35A0A1B0GVV1 85 aa20.19■□□□□ 0.82
CLN3-239ENST00000628023 PP2D1A8MPX8 630 aa20.19■□□□□ 0.82
CLN3-239ENST00000628023 M0QZ92 97 aa20.19■□□□□ 0.82
CLN3-239ENST00000628023 BAIAP3O94812 1187 aa20.19■□□□□ 0.82
CLN3-239ENST00000628023 STBD1O95210 358 aa20.19■□□□□ 0.82
CLN3-239ENST00000628023 RPA1P27694 616 aa20.19■□□□□ 0.82
CLN3-239ENST00000628023 TMOD1P28289 359 aa20.19■□□□□ 0.82
CLN3-239ENST00000628023 PTPAQ15257 358 aa20.19■□□□□ 0.82
CLN3-239ENST00000628023 ZRSR1Q15695 479 aaKnown RBP20.19■□□□□ 0.82
CLN3-239ENST00000628023 ZNF618Q5T7W0 954 aa20.19■□□□□ 0.82
CLN3-239ENST00000628023 POTEGQ6S5H5 508 aa20.19■□□□□ 0.82
CLN3-239ENST00000628023 CYP26B1Q9NR63 512 aa20.19■□□□□ 0.82
CLN3-239ENST00000628023 TFIP11Q9UBB9 837 aaKnown RBP20.19■□□□□ 0.82
CLN3-239ENST00000628023 GBF1Q92538 1859 aa20.18■□□□□ 0.82
CLN3-239ENST00000628023 TANC1Q9C0D5 1861 aa20.18■□□□□ 0.82
CLN3-239ENST00000628023 RSPH10B2B2RC85 870 aa20.18■□□□□ 0.82
CLN3-239ENST00000628023 LYPLA2O95372 231 aa20.18■□□□□ 0.82
CLN3-239ENST00000628023 RSPH10BP0C881 870 aa20.18■□□□□ 0.82
CLN3-239ENST00000628023 SPATA31C1P0DKV0 1188 aa20.18■□□□□ 0.82
CLN3-239ENST00000628023 MYOGP15173 224 aa20.18■□□□□ 0.82
CLN3-239ENST00000628023 KCNJ6P48051 423 aa20.18■□□□□ 0.82
CLN3-239ENST00000628023 POLGP54098 1239 aaPredicted RBP20.18■□□□□ 0.82
CLN3-239ENST00000628023 NPEPPSP55786 919 aa20.18■□□□□ 0.82
CLN3-239ENST00000628023 LRRC71Q8N4P6 559 aa20.18■□□□□ 0.82
CLN3-239ENST00000628023 PIGOQ8TEQ8 1089 aa20.18■□□□□ 0.82
CLN3-239ENST00000628023 ATXN2LQ8WWM7 1075 aaKnown RBP20.18■□□□□ 0.82
CLN3-239ENST00000628023 CDK5RAP3Q96JB5 506 aa20.18■□□□□ 0.82
CLN3-239ENST00000628023 AK8Q96MA6 479 aa20.18■□□□□ 0.82
CLN3-239ENST00000628023 MAP7D2Q96T17 732 aa20.18■□□□□ 0.82
CLN3-239ENST00000628023 JPH2Q9BR39 696 aaPredicted RBP20.18■□□□□ 0.82
CLN3-239ENST00000628023 SUGCTQ9HAC7 445 aa20.18■□□□□ 0.82
CLN3-239ENST00000628023 PPME1Q9Y570 386 aa20.18■□□□□ 0.82
CLN3-239ENST00000628023 ATP6V1DQ9Y5K8 247 aa20.18■□□□□ 0.82
CLN3-239ENST00000628023 SCN5AQ14524 2016 aa20.17■□□□□ 0.82
CLN3-239ENST00000628023 NCLP19338 710 aaKnown RBP20.17■□□□□ 0.82
CLN3-239ENST00000628023 CDC25AP30304 524 aa20.17■□□□□ 0.82
CLN3-239ENST00000628023 LONP1P36776 959 aaKnown RBP20.17■□□□□ 0.82
CLN3-239ENST00000628023 NASPP49321 788 aaPredicted RBP20.17■□□□□ 0.82
CLN3-239ENST00000628023 CLCN3P51790 818 aa20.17■□□□□ 0.82
CLN3-239ENST00000628023 NUCB2P80303 420 aa20.17■□□□□ 0.82
CLN3-239ENST00000628023 TMEM62Q0P6H9 643 aa20.17■□□□□ 0.82
CLN3-239ENST00000628023 ADGRE1Q14246 886 aa20.17■□□□□ 0.82
CLN3-239ENST00000628023 TARBP2Q15633 366 aaKnown RBP20.17■□□□□ 0.82
CLN3-239ENST00000628023 CCDC85BQ15834 202 aaPredicted RBP20.17■□□□□ 0.82
CLN3-239ENST00000628023 EFCAB12Q6NXP0 572 aa20.17■□□□□ 0.82
CLN3-239ENST00000628023 RPAINQ86UA6 219 aa20.17■□□□□ 0.82
CLN3-239ENST00000628023 RASSF8Q8NHQ8 419 aa20.17■□□□□ 0.82
CLN3-239ENST00000628023 SLC7A3Q8WY07 619 aa20.17■□□□□ 0.82
CLN3-239ENST00000628023 NACC1Q96RE7 527 aa20.17■□□□□ 0.82
CLN3-239ENST00000628023 BMP2KQ9NSY1 1161 aaPredicted RBP20.17■□□□□ 0.82
CLN3-239ENST00000628023 ANKEF1Q9NU02 776 aa20.17■□□□□ 0.82
CLN3-239ENST00000628023 THEGQ9P2T0 379 aa20.17■□□□□ 0.82
CLN3-239ENST00000628023 CFAP45Q9UL16 551 aa20.17■□□□□ 0.82
CLN3-239ENST00000628023 AKT3Q9Y243 479 aa20.17■□□□□ 0.82
CLN3-239ENST00000628023 CHD9Q3L8U1 2897 aa20.17■□□□□ 0.82
CLN3-239ENST00000628023 KDM3AQ9Y4C1 1321 aa20.17■□□□□ 0.82
CLN3-239ENST00000628023 ZBTB39O15060 712 aa20.16■□□□□ 0.82
CLN3-239ENST00000628023 YEATS4O95619 227 aa20.16■□□□□ 0.82
CLN3-239ENST00000628023 CA3P07451 260 aa20.16■□□□□ 0.82
CLN3-239ENST00000628023 MUTP22033 750 aa20.16■□□□□ 0.82
CLN3-239ENST00000628023 UBA7P41226 1012 aa20.16■□□□□ 0.82
CLN3-239ENST00000628023 DNM2P50570 870 aa20.16■□□□□ 0.82
CLN3-239ENST00000628023 MRPS6P82932 125 aaKnown RBP20.16■□□□□ 0.82
CLN3-239ENST00000628023 DNM1Q05193 864 aaKnown RBP20.16■□□□□ 0.82
CLN3-239ENST00000628023 SLC39A14Q15043 492 aa20.16■□□□□ 0.82
CLN3-239ENST00000628023 IER5Q5VY09 327 aa20.16■□□□□ 0.82
CLN3-239ENST00000628023 ATL3Q6DD88 541 aa20.16■□□□□ 0.82
CLN3-239ENST00000628023 EXOC8Q8IYI6 725 aa20.16■□□□□ 0.82
CLN3-239ENST00000628023 NME8Q8N427 588 aa20.16■□□□□ 0.82
CLN3-239ENST00000628023 DDX19AQ9NUU7 478 aaKnown RBP20.16■□□□□ 0.82
CLN3-239ENST00000628023 KIAA1024Q9UPX6 916 aa20.16■□□□□ 0.82
CLN3-239ENST00000628023 ZDHHC9Q9Y397 364 aa20.16■□□□□ 0.82
CLN3-239ENST00000628023 A0A087WWV3 80 aa20.15■□□□□ 0.82
CLN3-239ENST00000628023 SPTLC2O15270 562 aa20.15■□□□□ 0.82
CLN3-239ENST00000628023 MAFO75444 373 aaPredicted RBP20.15■□□□□ 0.82
CLN3-239ENST00000628023 RFC5P40937 340 aa20.15■□□□□ 0.82
CLN3-239ENST00000628023 GRIN1Q05586 938 aa20.15■□□□□ 0.82
CLN3-239ENST00000628023 CABP7Q86V35 215 aa20.15■□□□□ 0.82
CLN3-239ENST00000628023 HERC6Q8IVU3 1022 aa20.15■□□□□ 0.82
CLN3-239ENST00000628023 KIAA0319LQ8IZA0 1049 aa20.15■□□□□ 0.82
Retrieved 100 of 20,778 RNA–protein pairs in 14.5 ms