RNA–Protein interactions for RNA: ENST00000623985.3

LINC00643-206, long intergenic non-protein coding RNA 643, humanhuman

TSL 1 (best)

Gene LINC00643, Length 864 nt, Biotype processed transcript.

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LINC00643-206ENST00000623985 VTNP04004 478 aa16.65■□□□□ 0.26
LINC00643-206ENST00000623985 FOSBP53539 338 aa16.65■□□□□ 0.26
LINC00643-206ENST00000623985 PSMC5P62195 406 aa16.65■□□□□ 0.26
LINC00643-206ENST00000623985 TBC1D8BQ0IIM8 1120 aa16.65■□□□□ 0.26
LINC00643-206ENST00000623985 TARBP2Q15633 366 aaKnown RBP16.65■□□□□ 0.26
LINC00643-206ENST00000623985 CCDC85BQ15834 202 aaPredicted RBP16.65■□□□□ 0.26
LINC00643-206ENST00000623985 KIZQ2M2Z5 673 aa16.65■□□□□ 0.26
LINC00643-206ENST00000623985 XKR3Q5GH77 459 aa16.65■□□□□ 0.26
LINC00643-206ENST00000623985 EFCAB12Q6NXP0 572 aa16.65■□□□□ 0.26
LINC00643-206ENST00000623985 NPAS4Q8IUM7 802 aa16.65■□□□□ 0.26
LINC00643-206ENST00000623985 SLFN12Q8IYM2 578 aa16.65■□□□□ 0.26
LINC00643-206ENST00000623985 BANK1Q8NDB2 785 aa16.65■□□□□ 0.26
LINC00643-206ENST00000623985 TMEM40Q8WWA1 233 aa16.65■□□□□ 0.26
LINC00643-206ENST00000623985 HAS1Q92839 578 aa16.65■□□□□ 0.26
LINC00643-206ENST00000623985 OSMRQ99650 979 aa16.65■□□□□ 0.26
LINC00643-206ENST00000623985 NIFKQ9BYG3 293 aaKnown RBP16.65■□□□□ 0.26
LINC00643-206ENST00000623985 SUGCTQ9HAC7 445 aa16.65■□□□□ 0.26
LINC00643-206ENST00000623985 ERVK-5Q9HDB9 667 aa16.65■□□□□ 0.26
LINC00643-206ENST00000623985 AKT3Q9Y243 479 aa16.65■□□□□ 0.26
LINC00643-206ENST00000623985 TDRD15B5MCY1 1934 aaKnown RBP16.64■□□□□ 0.26
LINC00643-206ENST00000623985 MYH11P35749 1972 aa16.64■□□□□ 0.25
LINC00643-206ENST00000623985 BTBD18B2RXH4 712 aa16.64■□□□□ 0.25
LINC00643-206ENST00000623985 GPR182O15218 404 aa16.64■□□□□ 0.25
LINC00643-206ENST00000623985 DKC1O60832 514 aaKnown RBP eCLIP16.64■□□□□ 0.25
LINC00643-206ENST00000623985 HMGN5P82970 282 aaKnown RBP16.64■□□□□ 0.25
LINC00643-206ENST00000623985 TMEM266Q2M3C6 531 aa16.64■□□□□ 0.25
LINC00643-206ENST00000623985 MTERF2Q49AM1 385 aa16.64■□□□□ 0.25
LINC00643-206ENST00000623985 LRRC71Q8N4P6 559 aa16.64■□□□□ 0.25
LINC00643-206ENST00000623985 ZNF689Q96CS4 500 aaPredicted RBP16.64■□□□□ 0.25
LINC00643-206ENST00000623985 PPP1R16BQ96T49 567 aa16.64■□□□□ 0.25
LINC00643-206ENST00000623985 TMX1Q9H3N1 280 aa16.64■□□□□ 0.25
LINC00643-206ENST00000623985 CDHR5Q9HBB8 845 aa16.64■□□□□ 0.25
LINC00643-206ENST00000623985 NOC2LQ9Y3T9 749 aaKnown RBP16.64■□□□□ 0.25
LINC00643-206ENST00000623985 RWDD3Q9Y3V2 267 aa16.64■□□□□ 0.25
LINC00643-206ENST00000623985 EML1O00423 815 aa16.63■□□□□ 0.25
LINC00643-206ENST00000623985 DLL1O00548 723 aa16.63■□□□□ 0.25
LINC00643-206ENST00000623985 MARCH6O60337 910 aa16.63■□□□□ 0.25
LINC00643-206ENST00000623985 DGKIO75912 1065 aa16.63■□□□□ 0.25
LINC00643-206ENST00000623985 STBD1O95210 358 aa16.63■□□□□ 0.25
LINC00643-206ENST00000623985 BAG4O95429 457 aaKnown RBP16.63■□□□□ 0.25
LINC00643-206ENST00000623985 STAG3L1P0CL83 205 aa16.63■□□□□ 0.25
LINC00643-206ENST00000623985 QARSP47897 775 aaKnown RBP16.63■□□□□ 0.25
LINC00643-206ENST00000623985 SPIRE1Q08AE8 756 aa16.63■□□□□ 0.25
LINC00643-206ENST00000623985 NFX1Q12986 1120 aaKnown RBP16.63■□□□□ 0.25
LINC00643-206ENST00000623985 RABEP1Q15276 862 aa16.63■□□□□ 0.25
LINC00643-206ENST00000623985 SAFBQ15424 915 aaKnown RBP eCLIP16.63■□□□□ 0.25
LINC00643-206ENST00000623985 EPC2Q52LR7 807 aa16.63■□□□□ 0.25
LINC00643-206ENST00000623985 FAM228AQ86W67 206 aa16.63■□□□□ 0.25
LINC00643-206ENST00000623985 CRIPAKQ8N1N5 446 aa16.63■□□□□ 0.25
LINC00643-206ENST00000623985 FIBCD1Q8N539 461 aa16.63■□□□□ 0.25
LINC00643-206ENST00000623985 IL27Q8NEV9 243 aa16.63■□□□□ 0.25
LINC00643-206ENST00000623985 ATXN2LQ8WWM7 1075 aaKnown RBP16.63■□□□□ 0.25
LINC00643-206ENST00000623985 C8orf76Q96K31 380 aa16.63■□□□□ 0.25
LINC00643-206ENST00000623985 CEP89Q96ST8 783 aa16.63■□□□□ 0.25
LINC00643-206ENST00000623985 UPF2Q9HAU5 1272 aaKnown RBP16.63■□□□□ 0.25
LINC00643-206ENST00000623985 PRDM6Q9NQX0 595 aa16.63■□□□□ 0.25
LINC00643-206ENST00000623985 MYH15Q9Y2K3 1946 aa16.62■□□□□ 0.25
LINC00643-206ENST00000623985 DENND3A2RUS2 1198 aa16.62■□□□□ 0.25
LINC00643-206ENST00000623985 TMEM150BA6NC51 233 aa16.62■□□□□ 0.25
LINC00643-206ENST00000623985 NEMFO60524 1076 aa16.62■□□□□ 0.25
LINC00643-206ENST00000623985 P4HBP07237 508 aaKnown RBP16.62■□□□□ 0.25
LINC00643-206ENST00000623985 SARSP49591 514 aaKnown RBP16.62■□□□□ 0.25
LINC00643-206ENST00000623985 GPC3P51654 580 aa16.62■□□□□ 0.25
LINC00643-206ENST00000623985 NLRP11P59045 1033 aaKnown RBP16.62■□□□□ 0.25
LINC00643-206ENST00000623985 CALCRLQ16602 461 aa16.62■□□□□ 0.25
LINC00643-206ENST00000623985 RTN4RL1Q86UN2 441 aaPredicted RBP16.62■□□□□ 0.25
LINC00643-206ENST00000623985 ADAMTS10Q9H324 1103 aa16.62■□□□□ 0.25
LINC00643-206ENST00000623985 C1orf112Q9NSG2 853 aa16.62■□□□□ 0.25
LINC00643-206ENST00000623985 RNF216Q9NWF9 866 aaPredicted RBP16.62■□□□□ 0.25
LINC00643-206ENST00000623985 ST3GAL5Q9UNP4 418 aa16.62■□□□□ 0.25
LINC00643-206ENST00000623985 IGKV6-21A0A0C4DH24 114 aa16.61■□□□□ 0.25
LINC00643-206ENST00000623985 C5orf67F2Z3F1 127 aa16.61■□□□□ 0.25
LINC00643-206ENST00000623985 ST18O60284 1047 aa16.61■□□□□ 0.25
LINC00643-206ENST00000623985 MGEA5O60502 916 aa16.61■□□□□ 0.25
LINC00643-206ENST00000623985 LINC00271P0C7V0 271 aa16.61■□□□□ 0.25
LINC00643-206ENST00000623985 BTG3Q14201 252 aaPredicted RBP16.61■□□□□ 0.25
LINC00643-206ENST00000623985 EPHA7Q15375 998 aa16.61■□□□□ 0.25
LINC00643-206ENST00000623985 TJAP1Q5JTD0 557 aa16.61■□□□□ 0.25
LINC00643-206ENST00000623985 NCAPH2Q6IBW4 605 aa16.61■□□□□ 0.25
LINC00643-206ENST00000623985 ANO5Q75V66 913 aa16.61■□□□□ 0.25
LINC00643-206ENST00000623985 TMEM192Q8IY95 271 aa16.61■□□□□ 0.25
LINC00643-206ENST00000623985 CMTR2Q8IYT2 770 aaKnown RBP16.61■□□□□ 0.25
LINC00643-206ENST00000623985 CLP1Q92989 425 aaKnown RBP16.61■□□□□ 0.25
LINC00643-206ENST00000623985 JPH2Q9BR39 696 aaPredicted RBP16.61■□□□□ 0.25
LINC00643-206ENST00000623985 LXNQ9BS40 222 aa16.61■□□□□ 0.25
LINC00643-206ENST00000623985 COL25A1Q9BXS0 654 aaPredicted RBP16.61■□□□□ 0.25
LINC00643-206ENST00000623985 RGS18Q9NS28 235 aa16.61■□□□□ 0.25
LINC00643-206ENST00000623985 LRFN2Q9ULH4 789 aa16.61■□□□□ 0.25
LINC00643-206ENST00000623985 PPME1Q9Y570 386 aa16.61■□□□□ 0.25
LINC00643-206ENST00000623985 DDX11L8A8MPP1 907 aa16.6■□□□□ 0.25
LINC00643-206ENST00000623985 H3BNC9 293 aa16.6■□□□□ 0.25
LINC00643-206ENST00000623985 EIF4BP23588 611 aaKnown RBP16.6■□□□□ 0.25
LINC00643-206ENST00000623985 CTNNB1P35222 781 aa16.6■□□□□ 0.25
LINC00643-206ENST00000623985 DNM2P50570 870 aa16.6■□□□□ 0.25
LINC00643-206ENST00000623985 CDC42EP1Q00587 391 aa16.6■□□□□ 0.25
LINC00643-206ENST00000623985 PLA2G4FQ68DD2 849 aa16.6■□□□□ 0.25
LINC00643-206ENST00000623985 SLC24A5Q71RS6 500 aa16.6■□□□□ 0.25
LINC00643-206ENST00000623985 C4orf19Q8IY42 314 aa16.6■□□□□ 0.25
LINC00643-206ENST00000623985 FAM184AQ8NB25 1140 aa16.6■□□□□ 0.25
LINC00643-206ENST00000623985 NEK9Q8TD19 979 aa16.6■□□□□ 0.25
Retrieved 100 of 20,778 RNA–protein pairs in 49.2 ms