RNA–Protein interactions for RNA: ENST00000623219.3

LINC00643-205, long intergenic non-protein coding RNA 643, humanhuman

TSL 1 (best)

Gene LINC00643, Length 962 nt, Biotype processed transcript.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LINC00643-205ENST00000623219 FOSBP53539 338 aa16.65■□□□□ 0.26
LINC00643-205ENST00000623219 PSMC5P62195 406 aa16.65■□□□□ 0.26
LINC00643-205ENST00000623219 TBC1D8BQ0IIM8 1120 aa16.65■□□□□ 0.26
LINC00643-205ENST00000623219 TARBP2Q15633 366 aaKnown RBP16.65■□□□□ 0.26
LINC00643-205ENST00000623219 CCDC85BQ15834 202 aaPredicted RBP16.65■□□□□ 0.26
LINC00643-205ENST00000623219 KIZQ2M2Z5 673 aa16.65■□□□□ 0.26
LINC00643-205ENST00000623219 XKR3Q5GH77 459 aa16.65■□□□□ 0.26
LINC00643-205ENST00000623219 EFCAB12Q6NXP0 572 aa16.65■□□□□ 0.26
LINC00643-205ENST00000623219 NPAS4Q8IUM7 802 aa16.65■□□□□ 0.26
LINC00643-205ENST00000623219 SLFN12Q8IYM2 578 aa16.65■□□□□ 0.26
LINC00643-205ENST00000623219 BANK1Q8NDB2 785 aa16.65■□□□□ 0.26
LINC00643-205ENST00000623219 TMEM40Q8WWA1 233 aa16.65■□□□□ 0.26
LINC00643-205ENST00000623219 HAS1Q92839 578 aa16.65■□□□□ 0.26
LINC00643-205ENST00000623219 OSMRQ99650 979 aa16.65■□□□□ 0.26
LINC00643-205ENST00000623219 NIFKQ9BYG3 293 aaKnown RBP16.65■□□□□ 0.26
LINC00643-205ENST00000623219 SUGCTQ9HAC7 445 aa16.65■□□□□ 0.26
LINC00643-205ENST00000623219 ERVK-5Q9HDB9 667 aa16.65■□□□□ 0.26
LINC00643-205ENST00000623219 AKT3Q9Y243 479 aa16.65■□□□□ 0.26
LINC00643-205ENST00000623219 TDRD15B5MCY1 1934 aaKnown RBP16.64■□□□□ 0.26
LINC00643-205ENST00000623219 MYH11P35749 1972 aa16.64■□□□□ 0.25
LINC00643-205ENST00000623219 BTBD18B2RXH4 712 aa16.64■□□□□ 0.25
LINC00643-205ENST00000623219 GPR182O15218 404 aa16.64■□□□□ 0.25
LINC00643-205ENST00000623219 DKC1O60832 514 aaKnown RBP eCLIP16.64■□□□□ 0.25
LINC00643-205ENST00000623219 HMGN5P82970 282 aaKnown RBP16.64■□□□□ 0.25
LINC00643-205ENST00000623219 TMEM266Q2M3C6 531 aa16.64■□□□□ 0.25
LINC00643-205ENST00000623219 MTERF2Q49AM1 385 aa16.64■□□□□ 0.25
LINC00643-205ENST00000623219 LRRC71Q8N4P6 559 aa16.64■□□□□ 0.25
LINC00643-205ENST00000623219 ZNF689Q96CS4 500 aaPredicted RBP16.64■□□□□ 0.25
LINC00643-205ENST00000623219 PPP1R16BQ96T49 567 aa16.64■□□□□ 0.25
LINC00643-205ENST00000623219 TMX1Q9H3N1 280 aa16.64■□□□□ 0.25
LINC00643-205ENST00000623219 CDHR5Q9HBB8 845 aa16.64■□□□□ 0.25
LINC00643-205ENST00000623219 NOC2LQ9Y3T9 749 aaKnown RBP16.64■□□□□ 0.25
LINC00643-205ENST00000623219 RWDD3Q9Y3V2 267 aa16.64■□□□□ 0.25
LINC00643-205ENST00000623219 EML1O00423 815 aa16.63■□□□□ 0.25
LINC00643-205ENST00000623219 DLL1O00548 723 aa16.63■□□□□ 0.25
LINC00643-205ENST00000623219 MARCH6O60337 910 aa16.63■□□□□ 0.25
LINC00643-205ENST00000623219 DGKIO75912 1065 aa16.63■□□□□ 0.25
LINC00643-205ENST00000623219 STBD1O95210 358 aa16.63■□□□□ 0.25
LINC00643-205ENST00000623219 BAG4O95429 457 aaKnown RBP16.63■□□□□ 0.25
LINC00643-205ENST00000623219 STAG3L1P0CL83 205 aa16.63■□□□□ 0.25
LINC00643-205ENST00000623219 QARSP47897 775 aaKnown RBP16.63■□□□□ 0.25
LINC00643-205ENST00000623219 SPIRE1Q08AE8 756 aa16.63■□□□□ 0.25
LINC00643-205ENST00000623219 NFX1Q12986 1120 aaKnown RBP16.63■□□□□ 0.25
LINC00643-205ENST00000623219 RABEP1Q15276 862 aa16.63■□□□□ 0.25
LINC00643-205ENST00000623219 SAFBQ15424 915 aaKnown RBP eCLIP16.63■□□□□ 0.25
LINC00643-205ENST00000623219 EPC2Q52LR7 807 aa16.63■□□□□ 0.25
LINC00643-205ENST00000623219 FAM228AQ86W67 206 aa16.63■□□□□ 0.25
LINC00643-205ENST00000623219 CRIPAKQ8N1N5 446 aa16.63■□□□□ 0.25
LINC00643-205ENST00000623219 FIBCD1Q8N539 461 aa16.63■□□□□ 0.25
LINC00643-205ENST00000623219 IL27Q8NEV9 243 aa16.63■□□□□ 0.25
LINC00643-205ENST00000623219 ATXN2LQ8WWM7 1075 aaKnown RBP16.63■□□□□ 0.25
LINC00643-205ENST00000623219 C8orf76Q96K31 380 aa16.63■□□□□ 0.25
LINC00643-205ENST00000623219 CEP89Q96ST8 783 aa16.63■□□□□ 0.25
LINC00643-205ENST00000623219 UPF2Q9HAU5 1272 aaKnown RBP16.63■□□□□ 0.25
LINC00643-205ENST00000623219 PRDM6Q9NQX0 595 aa16.63■□□□□ 0.25
LINC00643-205ENST00000623219 MYH15Q9Y2K3 1946 aa16.62■□□□□ 0.25
LINC00643-205ENST00000623219 DENND3A2RUS2 1198 aa16.62■□□□□ 0.25
LINC00643-205ENST00000623219 TMEM150BA6NC51 233 aa16.62■□□□□ 0.25
LINC00643-205ENST00000623219 NEMFO60524 1076 aa16.62■□□□□ 0.25
LINC00643-205ENST00000623219 P4HBP07237 508 aaKnown RBP16.62■□□□□ 0.25
LINC00643-205ENST00000623219 SARSP49591 514 aaKnown RBP16.62■□□□□ 0.25
LINC00643-205ENST00000623219 GPC3P51654 580 aa16.62■□□□□ 0.25
LINC00643-205ENST00000623219 NLRP11P59045 1033 aaKnown RBP16.62■□□□□ 0.25
LINC00643-205ENST00000623219 CALCRLQ16602 461 aa16.62■□□□□ 0.25
LINC00643-205ENST00000623219 RTN4RL1Q86UN2 441 aaPredicted RBP16.62■□□□□ 0.25
LINC00643-205ENST00000623219 ADAMTS10Q9H324 1103 aa16.62■□□□□ 0.25
LINC00643-205ENST00000623219 C1orf112Q9NSG2 853 aa16.62■□□□□ 0.25
LINC00643-205ENST00000623219 RNF216Q9NWF9 866 aaPredicted RBP16.62■□□□□ 0.25
LINC00643-205ENST00000623219 ST3GAL5Q9UNP4 418 aa16.62■□□□□ 0.25
LINC00643-205ENST00000623219 IGKV6-21A0A0C4DH24 114 aa16.61■□□□□ 0.25
LINC00643-205ENST00000623219 C5orf67F2Z3F1 127 aa16.61■□□□□ 0.25
LINC00643-205ENST00000623219 ST18O60284 1047 aa16.61■□□□□ 0.25
LINC00643-205ENST00000623219 MGEA5O60502 916 aa16.61■□□□□ 0.25
LINC00643-205ENST00000623219 LINC00271P0C7V0 271 aa16.61■□□□□ 0.25
LINC00643-205ENST00000623219 BTG3Q14201 252 aaPredicted RBP16.61■□□□□ 0.25
LINC00643-205ENST00000623219 EPHA7Q15375 998 aa16.61■□□□□ 0.25
LINC00643-205ENST00000623219 TJAP1Q5JTD0 557 aa16.61■□□□□ 0.25
LINC00643-205ENST00000623219 NCAPH2Q6IBW4 605 aa16.61■□□□□ 0.25
LINC00643-205ENST00000623219 ANO5Q75V66 913 aa16.61■□□□□ 0.25
LINC00643-205ENST00000623219 TMEM192Q8IY95 271 aa16.61■□□□□ 0.25
LINC00643-205ENST00000623219 CMTR2Q8IYT2 770 aaKnown RBP16.61■□□□□ 0.25
LINC00643-205ENST00000623219 CLP1Q92989 425 aaKnown RBP16.61■□□□□ 0.25
LINC00643-205ENST00000623219 JPH2Q9BR39 696 aaPredicted RBP16.61■□□□□ 0.25
LINC00643-205ENST00000623219 LXNQ9BS40 222 aa16.61■□□□□ 0.25
LINC00643-205ENST00000623219 COL25A1Q9BXS0 654 aaPredicted RBP16.61■□□□□ 0.25
LINC00643-205ENST00000623219 RGS18Q9NS28 235 aa16.61■□□□□ 0.25
LINC00643-205ENST00000623219 LRFN2Q9ULH4 789 aa16.61■□□□□ 0.25
LINC00643-205ENST00000623219 PPME1Q9Y570 386 aa16.61■□□□□ 0.25
LINC00643-205ENST00000623219 DDX11L8A8MPP1 907 aa16.6■□□□□ 0.25
LINC00643-205ENST00000623219 H3BNC9 293 aa16.6■□□□□ 0.25
LINC00643-205ENST00000623219 EIF4BP23588 611 aaKnown RBP16.6■□□□□ 0.25
LINC00643-205ENST00000623219 CTNNB1P35222 781 aa16.6■□□□□ 0.25
LINC00643-205ENST00000623219 DNM2P50570 870 aa16.6■□□□□ 0.25
LINC00643-205ENST00000623219 CDC42EP1Q00587 391 aa16.6■□□□□ 0.25
LINC00643-205ENST00000623219 PLA2G4FQ68DD2 849 aa16.6■□□□□ 0.25
LINC00643-205ENST00000623219 SLC24A5Q71RS6 500 aa16.6■□□□□ 0.25
LINC00643-205ENST00000623219 C4orf19Q8IY42 314 aa16.6■□□□□ 0.25
LINC00643-205ENST00000623219 FAM184AQ8NB25 1140 aa16.6■□□□□ 0.25
LINC00643-205ENST00000623219 NEK9Q8TD19 979 aa16.6■□□□□ 0.25
LINC00643-205ENST00000623219 SYMPKQ92797 1274 aaKnown RBP16.6■□□□□ 0.25
Retrieved 100 of 20,778 RNA–protein pairs in 35.7 ms