RNA–Protein interactions for RNA: ENST00000622516.4

CUX1-221, Transcript of cut like homeobox 1, humanhuman

TSL 1 (best) BASIC

Gene CUX1, Length 2,990 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Exosome, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CUX1-221ENST00000622516 SLC26A4O43511 780 aa11.64□□□□□ -0.55
CUX1-221ENST00000622516 CTNND1O60716 968 aaKnown RBP11.64□□□□□ -0.55
CUX1-221ENST00000622516 TACC1O75410 805 aa11.64□□□□□ -0.55
CUX1-221ENST00000622516 SERPING1P05155 500 aa11.64□□□□□ -0.55
CUX1-221ENST00000622516 RPL13P26373 211 aaKnown RBP11.64□□□□□ -0.55
CUX1-221ENST00000622516 KLRC1P26715 233 aa11.64□□□□□ -0.55
CUX1-221ENST00000622516 ZNF280AP59817 542 aaPredicted RBP11.64□□□□□ -0.55
CUX1-221ENST00000622516 RNASE9P60153 205 aaKnown RBP11.64□□□□□ -0.55
CUX1-221ENST00000622516 SETQ01105 290 aaPredicted RBP11.64□□□□□ -0.55
CUX1-221ENST00000622516 KLHDC7AQ5VTJ3 777 aa11.64□□□□□ -0.55
CUX1-221ENST00000622516 FOXR2Q6PJQ5 311 aa11.64□□□□□ -0.55
CUX1-221ENST00000622516 B3GNT9Q6UX72 402 aa11.64□□□□□ -0.55
CUX1-221ENST00000622516 FAM186BQ8IYM0 893 aa11.64□□□□□ -0.55
CUX1-221ENST00000622516 SYCP3Q8IZU3 236 aa11.64□□□□□ -0.55
CUX1-221ENST00000622516 EHBP1Q8NDI1 1231 aa11.64□□□□□ -0.55
CUX1-221ENST00000622516 IQCDQ96DY2 449 aa11.64□□□□□ -0.55
CUX1-221ENST00000622516 VPS33BQ9H267 617 aa11.64□□□□□ -0.55
CUX1-221ENST00000622516 AGO4Q9HCK5 861 aaKnown RBP11.64□□□□□ -0.55
CUX1-221ENST00000622516 PPP1R9AQ9ULJ8 1098 aa11.64□□□□□ -0.55
CUX1-221ENST00000622516 ZNF541Q9H0D2 1346 aa11.64□□□□□ -0.55
CUX1-221ENST00000622516 NPEPPSP55786 919 aa11.64□□□□□ -0.55
CUX1-221ENST00000622516 SOX10P56693 466 aa11.64□□□□□ -0.55
CUX1-221ENST00000622516 BAATQ14032 418 aaPredicted RBP11.64□□□□□ -0.55
CUX1-221ENST00000622516 PGM5Q15124 567 aa11.64□□□□□ -0.55
CUX1-221ENST00000622516 ASIC2Q16515 512 aa11.64□□□□□ -0.55
CUX1-221ENST00000622516 KIAA0753Q2KHM9 967 aa11.64□□□□□ -0.55
CUX1-221ENST00000622516 PLA2G4FQ68DD2 849 aa11.64□□□□□ -0.55
CUX1-221ENST00000622516 DPY19L2P1Q6NXN4 242 aa11.64□□□□□ -0.55
CUX1-221ENST00000622516 RNF207Q6ZRF8 634 aa11.64□□□□□ -0.55
CUX1-221ENST00000622516 GSPT2Q8IYD1 628 aaKnown RBP11.64□□□□□ -0.55
CUX1-221ENST00000622516 TRPM4Q8TD43 1214 aa11.64□□□□□ -0.55
CUX1-221ENST00000622516 LPAR1Q92633 364 aa11.64□□□□□ -0.55
CUX1-221ENST00000622516 MS4A14Q96JA4 679 aa11.64□□□□□ -0.55
CUX1-221ENST00000622516 FUT8Q9BYC5 575 aa11.64□□□□□ -0.55
CUX1-221ENST00000622516 STK24Q9Y6E0 443 aa11.64□□□□□ -0.55
CUX1-221ENST00000622516 MYH11P35749 1972 aa11.63□□□□□ -0.55
CUX1-221ENST00000622516 K7ENM7 598 aa11.63□□□□□ -0.55
CUX1-221ENST00000622516 LCA5LO95447 670 aa11.63□□□□□ -0.55
CUX1-221ENST00000622516 FTCDO95954 541 aa11.63□□□□□ -0.55
CUX1-221ENST00000622516 GYS2P54840 703 aa11.63□□□□□ -0.55
CUX1-221ENST00000622516 BMT2Q1RMZ1 405 aa11.63□□□□□ -0.55
CUX1-221ENST00000622516 CBWD6Q4V339 395 aa11.63□□□□□ -0.55
CUX1-221ENST00000622516 CBWD3Q5JTY5 395 aa11.63□□□□□ -0.55
CUX1-221ENST00000622516 CBWD5Q5RIA9 395 aa11.63□□□□□ -0.55
CUX1-221ENST00000622516 ZNF571Q7Z3V5 609 aaPredicted RBP11.63□□□□□ -0.55
CUX1-221ENST00000622516 NLGN2Q8NFZ4 835 aa11.63□□□□□ -0.55
CUX1-221ENST00000622516 TRIM58Q8NG06 486 aa11.63□□□□□ -0.55
CUX1-221ENST00000622516 TSGA10Q9BZW7 698 aa11.63□□□□□ -0.55
CUX1-221ENST00000622516 FER1L6Q2WGJ9 1857 aa11.63□□□□□ -0.55
CUX1-221ENST00000622516 FRMPD4Q14CM0 1322 aa11.63□□□□□ -0.55
CUX1-221ENST00000622516 KIF13BQ9NQT8 1826 aa11.63□□□□□ -0.55
CUX1-221ENST00000622516 VWA5AO00534 786 aa11.63□□□□□ -0.55
CUX1-221ENST00000622516 GAP43P17677 238 aa11.63□□□□□ -0.55
CUX1-221ENST00000622516 MAPK7Q13164 816 aa11.63□□□□□ -0.55
CUX1-221ENST00000622516 ARHGEF16Q5VV41 709 aa11.63□□□□□ -0.55
CUX1-221ENST00000622516 ZNF662Q6ZS27 426 aa11.63□□□□□ -0.55
CUX1-221ENST00000622516 IRF2BP2Q7Z5L9 587 aa11.63□□□□□ -0.55
CUX1-221ENST00000622516 KIFC3Q9BVG8 833 aa11.63□□□□□ -0.55
CUX1-221ENST00000622516 AGPAT3Q9NRZ7 376 aa11.63□□□□□ -0.55
CUX1-221ENST00000622516 JRKLQ9Y4A0 524 aa11.63□□□□□ -0.55
CUX1-221ENST00000622516 ATAD5Q96QE3 1844 aa11.62□□□□□ -0.55
CUX1-221ENST00000622516 SSU72P8A0A1W2PR75 194 aa11.62□□□□□ -0.55
CUX1-221ENST00000622516 CCDC151A5D8V7 595 aa11.62□□□□□ -0.55
CUX1-221ENST00000622516 DLG4P78352 724 aa11.62□□□□□ -0.55
CUX1-221ENST00000622516 MAPK8IP2Q13387 824 aaPredicted RBP11.62□□□□□ -0.55
CUX1-221ENST00000622516 TUBB2AQ13885 445 aa11.62□□□□□ -0.55
CUX1-221ENST00000622516 BEND6Q5SZJ8 279 aaPredicted RBP11.62□□□□□ -0.55
CUX1-221ENST00000622516 MCF2L2Q86YR7 1114 aa11.62□□□□□ -0.55
CUX1-221ENST00000622516 CREG2Q8IUH2 290 aa11.62□□□□□ -0.55
CUX1-221ENST00000622516 RIT2Q99578 217 aa11.62□□□□□ -0.55
CUX1-221ENST00000622516 TUBB2BQ9BVA1 445 aa11.62□□□□□ -0.55
CUX1-221ENST00000622516 GBP3Q9H0R5 595 aa11.62□□□□□ -0.55
CUX1-221ENST00000622516 SNX12Q9UMY4 172 aa11.62□□□□□ -0.55
CUX1-221ENST00000622516 TMCO5BA8MYB1 307 aa11.62□□□□□ -0.55
CUX1-221ENST00000622516 EXOC3O60645 756 aa11.62□□□□□ -0.55
CUX1-221ENST00000622516 PALMO75781 387 aa11.62□□□□□ -0.55
CUX1-221ENST00000622516 GFPT2O94808 682 aa11.62□□□□□ -0.55
CUX1-221ENST00000622516 CCNE2O96020 404 aa11.62□□□□□ -0.55
CUX1-221ENST00000622516 HOXA7P31268 230 aaPredicted RBP11.62□□□□□ -0.55
CUX1-221ENST00000622516 PSMC2P35998 433 aaKnown RBP11.62□□□□□ -0.55
CUX1-221ENST00000622516 RARRES1P49788 294 aa11.62□□□□□ -0.55
CUX1-221ENST00000622516 BACE1P56817 501 aa11.62□□□□□ -0.55
CUX1-221ENST00000622516 SLC18A3Q16572 532 aa11.62□□□□□ -0.55
CUX1-221ENST00000622516 SNRNP48Q6IEG0 339 aaKnown RBP11.62□□□□□ -0.55
CUX1-221ENST00000622516 GBP6Q6ZN66 633 aa11.62□□□□□ -0.55
CUX1-221ENST00000622516 HS2ST1Q7LGA3 356 aa11.62□□□□□ -0.55
CUX1-221ENST00000622516 MSANTD4Q8NCY6 345 aa11.62□□□□□ -0.55
CUX1-221ENST00000622516 HDAC7Q8WUI4 952 aa11.62□□□□□ -0.55
CUX1-221ENST00000622516 ELMO3Q96BJ8 720 aa11.62□□□□□ -0.55
CUX1-221ENST00000622516 CCDC43Q96MW1 224 aaKnown RBP11.62□□□□□ -0.55
CUX1-221ENST00000622516 EDEM3Q9BZQ6 932 aa11.62□□□□□ -0.55
CUX1-221ENST00000622516 SIX2Q9NPC8 291 aa11.62□□□□□ -0.55
CUX1-221ENST00000622516 RNF146Q9NTX7 359 aa11.62□□□□□ -0.55
CUX1-221ENST00000622516 UBIAD1Q9Y5Z9 338 aa11.62□□□□□ -0.55
CUX1-221ENST00000622516 BACH1O14867 736 aa11.61□□□□□ -0.55
CUX1-221ENST00000622516 ZBED4O75132 1171 aa11.61□□□□□ -0.55
CUX1-221ENST00000622516 P4HBP07237 508 aaKnown RBP11.61□□□□□ -0.55
CUX1-221ENST00000622516 PTPRAP18433 802 aa11.61□□□□□ -0.55
CUX1-221ENST00000622516 YWHABP31946 246 aaKnown RBP11.61□□□□□ -0.55
CUX1-221ENST00000622516 PCNX4Q63HM2 1172 aa11.61□□□□□ -0.55
Retrieved 100 of 20,778 RNA–protein pairs in 23.3 ms