RNA–Protein interactions for RNA: ENST00000601689.1

UPF1-212, Transcript of UPF1, RNA helicase and ATPase, humanhuman

TSL 4

Gene UPF1, Length 561 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF1-212ENST00000601689 DTHD1Q6ZMT9 781 aa21.64■■□□□ 1.05
UPF1-212ENST00000601689 LRRC71Q8N4P6 559 aa21.64■■□□□ 1.05
UPF1-212ENST00000601689 TUFT1Q9NNX1 390 aa21.64■■□□□ 1.05
UPF1-212ENST00000601689 GBF1Q92538 1859 aa21.63■■□□□ 1.05
UPF1-212ENST00000601689 WNT7AO00755 349 aa21.63■■□□□ 1.05
UPF1-212ENST00000601689 SLITRK3O94933 977 aa21.63■■□□□ 1.05
UPF1-212ENST00000601689 BMP15O95972 392 aa21.63■■□□□ 1.05
UPF1-212ENST00000601689 VTNP04004 478 aa21.63■■□□□ 1.05
UPF1-212ENST00000601689 XRCC6P12956 609 aaKnown RBP eCLIP21.63■■□□□ 1.05
UPF1-212ENST00000601689 ANO5Q75V66 913 aa21.63■■□□□ 1.05
UPF1-212ENST00000601689 TCP11Q8WWU5 503 aa21.63■■□□□ 1.05
UPF1-212ENST00000601689 INO80BQ9C086 356 aaPredicted RBP21.63■■□□□ 1.05
UPF1-212ENST00000601689 SEMA6BQ9H3T3 888 aa21.63■■□□□ 1.05
UPF1-212ENST00000601689 ZNF576Q9H609 170 aa21.63■■□□□ 1.05
UPF1-212ENST00000601689 ANKEF1Q9NU02 776 aa21.63■■□□□ 1.05
UPF1-212ENST00000601689 POTEMA6NI47 508 aa21.62■■□□□ 1.05
UPF1-212ENST00000601689 MAFO75444 373 aaPredicted RBP21.62■■□□□ 1.05
UPF1-212ENST00000601689 LYPLA2O95372 231 aa21.62■■□□□ 1.05
UPF1-212ENST00000601689 MUTP22033 750 aa21.62■■□□□ 1.05
UPF1-212ENST00000601689 PRPHP41219 470 aa21.62■■□□□ 1.05
UPF1-212ENST00000601689 FXR2P51116 673 aaKnown RBP eCLIP21.62■■□□□ 1.054e-7■■■■■ 27.9
UPF1-212ENST00000601689 RABGGTBP53611 331 aa21.62■■□□□ 1.05
UPF1-212ENST00000601689 NLRP11P59045 1033 aaKnown RBP21.62■■□□□ 1.05
UPF1-212ENST00000601689 PDIA5Q14554 519 aa21.62■■□□□ 1.05
UPF1-212ENST00000601689 KIZQ2M2Z5 673 aa21.62■■□□□ 1.05
UPF1-212ENST00000601689 PPP2R2DQ66LE6 453 aa21.62■■□□□ 1.05
UPF1-212ENST00000601689 PLA2G4FQ68DD2 849 aa21.62■■□□□ 1.05
UPF1-212ENST00000601689 NLRP7Q8WX94 980 aa21.62■■□□□ 1.05
UPF1-212ENST00000601689 FAM161BQ96MY7 647 aa21.62■■□□□ 1.05
UPF1-212ENST00000601689 RAD9AQ99638 391 aa21.62■■□□□ 1.05
UPF1-212ENST00000601689 HSD17B14Q9BPX1 270 aa21.62■■□□□ 1.05
UPF1-212ENST00000601689 LRWD1Q9UFC0 647 aa21.62■■□□□ 1.05
UPF1-212ENST00000601689 INSL6Q9Y581 213 aa21.62■■□□□ 1.05
UPF1-212ENST00000601689 PCDHB6Q9Y5E3 794 aa21.62■■□□□ 1.05
UPF1-212ENST00000601689 LAMA2P24043 3122 aaKnown RBP21.62■■□□□ 1.05
UPF1-212ENST00000601689 GJB5O95377 273 aa21.61■■□□□ 1.05
UPF1-212ENST00000601689 SLC34A2O95436 690 aa21.61■■□□□ 1.05
UPF1-212ENST00000601689 CD52P31358 61 aa21.61■■□□□ 1.05
UPF1-212ENST00000601689 PBX2P40425 430 aa21.61■■□□□ 1.05
UPF1-212ENST00000601689 Q7L0L9 218 aa21.61■■□□□ 1.05
UPF1-212ENST00000601689 NACC1Q96RE7 527 aa21.61■■□□□ 1.05
UPF1-212ENST00000601689 OSMRQ99650 979 aa21.61■■□□□ 1.05
UPF1-212ENST00000601689 POLR3CQ9BUI4 534 aaPredicted RBP21.61■■□□□ 1.05
UPF1-212ENST00000601689 GCOM2Q9BZD3 368 aaPredicted RBP21.61■■□□□ 1.05
UPF1-212ENST00000601689 NKX2-4Q9H2Z4 354 aa21.61■■□□□ 1.05
UPF1-212ENST00000601689 EIF4ENIF1Q9NRA8 985 aaKnown RBP21.61■■□□□ 1.05
UPF1-212ENST00000601689 SUCLA2Q9P2R7 463 aaPredicted RBP21.61■■□□□ 1.05
UPF1-212ENST00000601689 PADI3Q9ULW8 664 aa21.61■■□□□ 1.05
UPF1-212ENST00000601689 SIP14410 1827 aa21.6■■□□□ 1.05
UPF1-212ENST00000601689 ASAP2O43150 1006 aa21.6■■□□□ 1.05
UPF1-212ENST00000601689 STBD1O95210 358 aa21.6■■□□□ 1.05
UPF1-212ENST00000601689 ZSCAN20P17040 1043 aaPredicted RBP21.6■■□□□ 1.05
UPF1-212ENST00000601689 RPA1P27694 616 aa21.6■■□□□ 1.05
UPF1-212ENST00000601689 TOB1P50616 345 aaPredicted RBP21.6■■□□□ 1.05
UPF1-212ENST00000601689 DEFB103AP81534 67 aa21.6■■□□□ 1.05
UPF1-212ENST00000601689 NBR1Q14596 966 aa21.6■■□□□ 1.05
UPF1-212ENST00000601689 KRT79Q5XKE5 535 aa21.6■■□□□ 1.05
UPF1-212ENST00000601689 LIN28BQ6ZN17 250 aaKnown RBP eCLIP21.6■■□□□ 1.05
UPF1-212ENST00000601689 PSPC1Q8WXF1 523 aaKnown RBP21.6■■□□□ 1.05
UPF1-212ENST00000601689 PPP1R16BQ96T49 567 aa21.6■■□□□ 1.05
UPF1-212ENST00000601689 MTRQ99707 1265 aa21.6■■□□□ 1.05
UPF1-212ENST00000601689 SH2D3AQ9BRG2 576 aa21.6■■□□□ 1.05
UPF1-212ENST00000601689 MTMR10Q9NXD2 777 aa21.6■■□□□ 1.05
UPF1-212ENST00000601689 MYO9BQ13459 2157 aa21.6■■□□□ 1.05
UPF1-212ENST00000601689 DENND3A2RUS2 1198 aa21.59■■□□□ 1.05
UPF1-212ENST00000601689 TMEM150BA6NC51 233 aa21.59■■□□□ 1.05
UPF1-212ENST00000601689 DGAT1O75907 488 aa21.59■■□□□ 1.05
UPF1-212ENST00000601689 UPP2O95045 317 aa21.59■■□□□ 1.05
UPF1-212ENST00000601689 STAG3L1P0CL83 205 aa21.59■■□□□ 1.05
UPF1-212ENST00000601689 EIF4BP23588 611 aaKnown RBP21.59■■□□□ 1.05
UPF1-212ENST00000601689 NPEPPSP55786 919 aa21.59■■□□□ 1.05
UPF1-212ENST00000601689 FAM117BQ6P1L5 589 aa21.59■■□□□ 1.05
UPF1-212ENST00000601689 ZNF410Q86VK4 478 aa21.59■■□□□ 1.05
UPF1-212ENST00000601689 RHPN2Q8IUC4 686 aa21.59■■□□□ 1.05
UPF1-212ENST00000601689 TOP1MTQ969P6 601 aa21.59■■□□□ 1.05
UPF1-212ENST00000601689 YME1L1Q96TA2 773 aa21.59■■□□□ 1.05
UPF1-212ENST00000601689 GAS2L1Q99501 681 aaPredicted RBP21.59■■□□□ 1.05
UPF1-212ENST00000601689 AGO3Q9H9G7 860 aaKnown RBP21.59■■□□□ 1.05
UPF1-212ENST00000601689 FOXD4L1Q9NU39 408 aa21.59■■□□□ 1.05
UPF1-212ENST00000601689 IGKV6-21A0A0C4DH24 114 aa21.58■■□□□ 1.05
UPF1-212ENST00000601689 GPR32O75388 356 aa21.58■■□□□ 1.05
UPF1-212ENST00000601689 SYT1P21579 422 aa21.58■■□□□ 1.05
UPF1-212ENST00000601689 CCT6AP40227 531 aaKnown RBP21.58■■□□□ 1.05
UPF1-212ENST00000601689 GPC3P51654 580 aa21.58■■□□□ 1.05
UPF1-212ENST00000601689 ARL6IP4Q66PJ3 421 aaKnown RBP21.58■■□□□ 1.05
UPF1-212ENST00000601689 CATSPER3Q86XQ3 398 aa21.58■■□□□ 1.05
UPF1-212ENST00000601689 LINC01465Q8N7H1 131 aa21.58■■□□□ 1.05
UPF1-212ENST00000601689 ZSCAN16Q9H4T2 348 aaPredicted RBP21.58■■□□□ 1.05
UPF1-212ENST00000601689 DHX33Q9H6R0 707 aaKnown RBP21.58■■□□□ 1.05
UPF1-212ENST00000601689 ATP6V0A4Q9HBG4 840 aa21.58■■□□□ 1.05
UPF1-212ENST00000601689 C1orf112Q9NSG2 853 aa21.58■■□□□ 1.05
UPF1-212ENST00000601689 WRAP73Q9P2S5 460 aaPredicted RBP21.58■■□□□ 1.05
UPF1-212ENST00000601689 LRFN2Q9ULH4 789 aa21.58■■□□□ 1.05
UPF1-212ENST00000601689 ST3GAL5Q9UNP4 418 aa21.58■■□□□ 1.05
UPF1-212ENST00000601689 ENPP3O14638 875 aa21.57■■□□□ 1.04
UPF1-212ENST00000601689 CA3P07451 260 aa21.57■■□□□ 1.04
UPF1-212ENST00000601689 SFPQP23246 707 aaKnown RBP eCLIP21.57■■□□□ 1.04
UPF1-212ENST00000601689 MXD4Q14582 209 aaPredicted RBP21.57■■□□□ 1.04
UPF1-212ENST00000601689 EMC2Q15006 297 aa21.57■■□□□ 1.04
UPF1-212ENST00000601689 C4orf32Q8N8J7 132 aa21.57■■□□□ 1.04
Retrieved 100 of 20,778 RNA–protein pairs in 19.7 ms