RNA–Protein interactions for RNA: ENST00000600310.5

UPF1-209, Transcript of UPF1, RNA helicase and ATPase, humanhuman

TSL 4

Gene UPF1, Length 750 nt, Biotype processed transcript, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF1-209ENST00000600310 LRRC8DQ7L1W4 858 aa21.57■■□□□ 1.04
UPF1-209ENST00000600310 SYMPKQ92797 1274 aaKnown RBP21.57■■□□□ 1.04
UPF1-209ENST00000600310 CALML4Q96GE6 196 aa21.57■■□□□ 1.04
UPF1-209ENST00000600310 CDK5RAP3Q96JB5 506 aa21.57■■□□□ 1.04
UPF1-209ENST00000600310 SPATA32Q96LK8 384 aa21.57■■□□□ 1.04
UPF1-209ENST00000600310 SCAND2PQ9GZW5 306 aaPredicted RBP21.57■■□□□ 1.04
UPF1-209ENST00000600310 PCDHA7Q9UN72 937 aa21.57■■□□□ 1.04
UPF1-209ENST00000600310 DNM3Q9UQ16 869 aa21.57■■□□□ 1.04
UPF1-209ENST00000600310 TMOD1P28289 359 aa21.56■■□□□ 1.04
UPF1-209ENST00000600310 ME1P48163 572 aa21.56■■□□□ 1.04
UPF1-209ENST00000600310 CLCN3P51790 818 aa21.56■■□□□ 1.04
UPF1-209ENST00000600310 POLGP54098 1239 aaPredicted RBP21.56■■□□□ 1.04
UPF1-209ENST00000600310 KCNK18Q7Z418 384 aa21.56■■□□□ 1.04
UPF1-209ENST00000600310 LRRC71Q8N4P6 559 aa21.56■■□□□ 1.04
UPF1-209ENST00000600310 TMEM199Q8N511 208 aa21.56■■□□□ 1.04
UPF1-209ENST00000600310 SLC7A3Q8WY07 619 aa21.56■■□□□ 1.04
UPF1-209ENST00000600310 CCDC43Q96MW1 224 aaKnown RBP21.56■■□□□ 1.04
UPF1-209ENST00000600310 SUGCTQ9HAC7 445 aa21.56■■□□□ 1.04
UPF1-209ENST00000600310 RSPH10B2B2RC85 870 aa21.55■■□□□ 1.04
UPF1-209ENST00000600310 E9PMD0 336 aa21.55■■□□□ 1.04
UPF1-209ENST00000600310 GAS2O43903 313 aaKnown RBP21.55■■□□□ 1.04
UPF1-209ENST00000600310 DGAT1O75907 488 aa21.55■■□□□ 1.04
UPF1-209ENST00000600310 PARNO95453 639 aaKnown RBP21.55■■□□□ 1.04
UPF1-209ENST00000600310 EYA4O95677 639 aa21.55■■□□□ 1.04
UPF1-209ENST00000600310 RSPH10BP0C881 870 aa21.55■■□□□ 1.04
UPF1-209ENST00000600310 TXLNAP40222 546 aa21.55■■□□□ 1.04
UPF1-209ENST00000600310 MDM2Q00987 491 aaPredicted RBP21.55■■□□□ 1.04
UPF1-209ENST00000600310 MKRN4PQ13434 485 aaPredicted RBP21.55■■□□□ 1.04
UPF1-209ENST00000600310 KARSQ15046 597 aaKnown RBP21.55■■□□□ 1.04
UPF1-209ENST00000600310 MAP7D2Q96T17 732 aa21.55■■□□□ 1.04
UPF1-209ENST00000600310 PLIN2Q99541 437 aa21.55■■□□□ 1.04
UPF1-209ENST00000600310 BHMT2Q9H2M3 363 aa21.55■■□□□ 1.04
UPF1-209ENST00000600310 ARHGEF35A5YM69 484 aa21.54■■□□□ 1.04
UPF1-209ENST00000600310 CHRNA1P02708 482 aa21.54■■□□□ 1.04
UPF1-209ENST00000600310 CTSHP09668 335 aa21.54■■□□□ 1.04
UPF1-209ENST00000600310 CSF2RAP15509 400 aa21.54■■□□□ 1.04
UPF1-209ENST00000600310 MAGEA10P43363 369 aaPredicted RBP21.54■■□□□ 1.04
UPF1-209ENST00000600310 MRPS6P82932 125 aaKnown RBP21.54■■□□□ 1.04
UPF1-209ENST00000600310 MGAT3Q09327 533 aa21.54■■□□□ 1.04
UPF1-209ENST00000600310 DRP2Q13474 957 aa21.54■■□□□ 1.04
UPF1-209ENST00000600310 EMC2Q15006 297 aa21.54■■□□□ 1.04
UPF1-209ENST00000600310 IER5Q5VY09 327 aa21.54■■□□□ 1.04
UPF1-209ENST00000600310 SHC4Q6S5L8 630 aa21.54■■□□□ 1.04
UPF1-209ENST00000600310 SCLYQ96I15 445 aa21.54■■□□□ 1.04
UPF1-209ENST00000600310 XPNPEP1Q9NQW7 623 aa21.54■■□□□ 1.04
UPF1-209ENST00000600310 CCDC39Q9UFE4 941 aa21.54■■□□□ 1.04
UPF1-209ENST00000600310 CDY2AQ9Y6F7 541 aa21.54■■□□□ 1.04
UPF1-209ENST00000600310 PLCG1P19174 1290 aa21.53■■□□□ 1.04
UPF1-209ENST00000600310 RFC2P35250 354 aa21.53■■□□□ 1.04
UPF1-209ENST00000600310 DNM2P50570 870 aa21.53■■□□□ 1.04
UPF1-209ENST00000600310 FPGSQ05932 587 aa21.53■■□□□ 1.04
UPF1-209ENST00000600310 GPNMBQ14956 572 aa21.53■■□□□ 1.04
UPF1-209ENST00000600310 PADI6Q6TGC4 694 aa21.53■■□□□ 1.04
UPF1-209ENST00000600310 ZNF710Q8N1W2 664 aa21.53■■□□□ 1.04
UPF1-209ENST00000600310 RASSF8Q8NHQ8 419 aa21.53■■□□□ 1.04
UPF1-209ENST00000600310 MTRQ99707 1265 aa21.53■■□□□ 1.04
UPF1-209ENST00000600310 GDF15Q99988 308 aa21.53■■□□□ 1.04
UPF1-209ENST00000600310 ATP6V0A4Q9HBG4 840 aa21.53■■□□□ 1.04
UPF1-209ENST00000600310 TRPV2Q9Y5S1 764 aa21.53■■□□□ 1.04
UPF1-209ENST00000600310 M0QZ92 97 aa21.52■■□□□ 1.04
UPF1-209ENST00000600310 USO1O60763 962 aaKnown RBP21.52■■□□□ 1.04
UPF1-209ENST00000600310 VTNP04004 478 aa21.52■■□□□ 1.04
UPF1-209ENST00000600310 CYP11B2P19099 503 aa21.52■■□□□ 1.04
UPF1-209ENST00000600310 TMEM62Q0P6H9 643 aa21.52■■□□□ 1.04
UPF1-209ENST00000600310 PPIGQ13427 754 aaKnown RBP eCLIP21.52■■□□□ 1.043e-7■■□□□ 11.5
UPF1-209ENST00000600310 MBTPS1Q14703 1052 aa21.52■■□□□ 1.04
UPF1-209ENST00000600310 LRRC15Q8TF66 581 aa21.52■■□□□ 1.04
UPF1-209ENST00000600310 TCP11Q8WWU5 503 aa21.52■■□□□ 1.04
UPF1-209ENST00000600310 CELF4Q9BZC1 486 aaKnown RBP21.52■■□□□ 1.04
UPF1-209ENST00000600310 GDPD2Q9HCC8 539 aa21.52■■□□□ 1.04
UPF1-209ENST00000600310 BMP2KQ9NSY1 1161 aaPredicted RBP21.52■■□□□ 1.04
UPF1-209ENST00000600310 BLOC1S4Q9NUP1 217 aa21.52■■□□□ 1.04
UPF1-209ENST00000600310 SUCLA2Q9P2R7 463 aaPredicted RBP21.52■■□□□ 1.04
UPF1-209ENST00000600310 AKT3Q9Y243 479 aa21.52■■□□□ 1.04
UPF1-209ENST00000600310 LTBP2Q14767 1821 aa21.51■■□□□ 1.03
UPF1-209ENST00000600310 NBNO60934 754 aa21.51■■□□□ 1.03
UPF1-209ENST00000600310 GPR32O75388 356 aa21.51■■□□□ 1.03
UPF1-209ENST00000600310 PLA2G4BP0C869 781 aa21.51■■□□□ 1.03
UPF1-209ENST00000600310 RRAGBQ5VZM2 374 aa21.51■■□□□ 1.03
UPF1-209ENST00000600310 ADALQ6DHV7 355 aa21.51■■□□□ 1.03
UPF1-209ENST00000600310 RPUSD2Q8IZ73 545 aaKnown RBP21.51■■□□□ 1.03
UPF1-209ENST00000600310 SYT2Q8N9I0 419 aaPredicted RBP21.51■■□□□ 1.03
UPF1-209ENST00000600310 MCPH1Q8NEM0 835 aa21.51■■□□□ 1.03
UPF1-209ENST00000600310 TMEM143Q96AN5 459 aa21.51■■□□□ 1.03
UPF1-209ENST00000600310 VWCEQ96DN2 955 aa21.51■■□□□ 1.03
UPF1-209ENST00000600310 IL23AQ9NPF7 189 aa21.51■■□□□ 1.03
UPF1-209ENST00000600310 STK17AQ9UEE5 414 aa21.51■■□□□ 1.03
UPF1-209ENST00000600310 CXCL10P02778 98 aa21.5■■□□□ 1.03
UPF1-209ENST00000600310 PFKMP08237 780 aa21.5■■□□□ 1.03
UPF1-209ENST00000600310 SLC12A3P55017 1021 aa21.5■■□□□ 1.03
UPF1-209ENST00000600310 CDC42EP1Q00587 391 aa21.5■■□□□ 1.03
UPF1-209ENST00000600310 RESP18Q5W5W9 173 aa21.5■■□□□ 1.03
UPF1-209ENST00000600310 CCDC73Q6ZRK6 1079 aa21.5■■□□□ 1.03
UPF1-209ENST00000600310 PSPC1Q8WXF1 523 aaKnown RBP21.5■■□□□ 1.03
UPF1-209ENST00000600310 RAD54LQ92698 747 aa21.5■■□□□ 1.03
UPF1-209ENST00000600310 ADAMTS10Q9H324 1103 aa21.5■■□□□ 1.03
UPF1-209ENST00000600310 SQORQ9Y6N5 450 aa21.5■■□□□ 1.03
UPF1-209ENST00000600310 A0A087X0B3 334 aa21.49■■□□□ 1.03
UPF1-209ENST00000600310 ARL2P36404 184 aa21.49■■□□□ 1.03
UPF1-209ENST00000600310 GPC3P51654 580 aa21.49■■□□□ 1.03
Retrieved 100 of 20,778 RNA–protein pairs in 29.2 ms