RNA–Protein interactions for RNA: ENST00000600259.5

VRK3-220, Transcript of vaccinia related kinase 3, humanhuman

TSL 2

Gene VRK3, Length 572 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VRK3-220ENST00000600259 FAM86B2P0C5J1 330 aa6.97□□□□□ -1.29
VRK3-220ENST00000600259 CALM1P0DP23 149 aa6.97□□□□□ -1.29
VRK3-220ENST00000600259 CALM2P0DP24 149 aa6.97□□□□□ -1.29
VRK3-220ENST00000600259 CALM3P0DP25 149 aa6.97□□□□□ -1.29
VRK3-220ENST00000600259 FGFR1P11362 822 aa6.97□□□□□ -1.29
VRK3-220ENST00000600259 HOXB8P17481 243 aaPredicted RBP6.97□□□□□ -1.29
VRK3-220ENST00000600259 SREBF1P36956 1147 aa6.97□□□□□ -1.29
VRK3-220ENST00000600259 EXOSC10Q01780 885 aaKnown RBP6.97□□□□□ -1.29
VRK3-220ENST00000600259 KIZQ2M2Z5 673 aa6.97□□□□□ -1.29
VRK3-220ENST00000600259 SWSAP1Q6NVH7 229 aa6.97□□□□□ -1.29
VRK3-220ENST00000600259 CASC1Q6TDU7 716 aa6.97□□□□□ -1.29
VRK3-220ENST00000600259 KCNT2Q6UVM3 1135 aa6.97□□□□□ -1.29
VRK3-220ENST00000600259 ZNF598Q86UK7 904 aaKnown RBP6.97□□□□□ -1.29
VRK3-220ENST00000600259 SUGP1Q8IWZ8 645 aaKnown RBP6.97□□□□□ -1.29
VRK3-220ENST00000600259 MRPL43Q8N983 215 aaKnown RBP6.97□□□□□ -1.29
VRK3-220ENST00000600259 MRPS27Q92552 414 aaKnown RBP6.97□□□□□ -1.29
VRK3-220ENST00000600259 NEK1Q96PY6 1258 aa6.97□□□□□ -1.29
VRK3-220ENST00000600259 SDF4Q9BRK5 362 aa6.97□□□□□ -1.29
VRK3-220ENST00000600259 LRRC2Q9BYS8 371 aa6.97□□□□□ -1.29
VRK3-220ENST00000600259 TMEM117Q9H0C3 514 aa6.97□□□□□ -1.29
VRK3-220ENST00000600259 ADAMTS10Q9H324 1103 aa6.97□□□□□ -1.29
VRK3-220ENST00000600259 AAASQ9NRG9 546 aa6.97□□□□□ -1.29
VRK3-220ENST00000600259 TMEM161AQ9NX61 479 aa6.97□□□□□ -1.29
VRK3-220ENST00000600259 MAFBQ9Y5Q3 323 aaPredicted RBP6.97□□□□□ -1.29
VRK3-220ENST00000600259 V9GY48 417 aaPredicted RBP6.97□□□□□ -1.29
VRK3-220ENST00000600259 CNTNAP5Q8WYK1 1306 aa6.97□□□□□ -1.29
VRK3-220ENST00000600259 COL1A2P08123 1366 aa6.96□□□□□ -1.29
VRK3-220ENST00000600259 DMDP11532 3685 aa6.96□□□□□ -1.29
VRK3-220ENST00000600259 FAM186AA6NE01 2351 aa6.96□□□□□ -1.29
VRK3-220ENST00000600259 GVINP1Q7Z2Y8 2422 aa6.96□□□□□ -1.3
VRK3-220ENST00000600259 CCDC69A6NI79 296 aa6.96□□□□□ -1.3
VRK3-220ENST00000600259 VTNP04004 478 aa6.96□□□□□ -1.3
VRK3-220ENST00000600259 LAG3P18627 525 aa6.96□□□□□ -1.3
VRK3-220ENST00000600259 TECP42680 631 aa6.96□□□□□ -1.3
VRK3-220ENST00000600259 NUBP1P53384 320 aa6.96□□□□□ -1.3
VRK3-220ENST00000600259 CLLU1OSQ5K130 101 aa6.96□□□□□ -1.3
VRK3-220ENST00000600259 PLPP4Q5VZY2 271 aa6.96□□□□□ -1.3
VRK3-220ENST00000600259 CREB3L3Q68CJ9 461 aa6.96□□□□□ -1.3
VRK3-220ENST00000600259 PDXDC2PQ6P474 469 aa6.96□□□□□ -1.3
VRK3-220ENST00000600259 APOA5Q6Q788 366 aa6.96□□□□□ -1.3
VRK3-220ENST00000600259 NFXL1Q6ZNB6 911 aa6.96□□□□□ -1.3
VRK3-220ENST00000600259 HEATR3Q7Z4Q2 680 aa6.96□□□□□ -1.3
VRK3-220ENST00000600259 ECHDC2Q86YB7 292 aa6.96□□□□□ -1.3
VRK3-220ENST00000600259 THNSL1Q8IYQ7 743 aa6.96□□□□□ -1.3
VRK3-220ENST00000600259 FEZF2Q8TBJ5 459 aa6.96□□□□□ -1.3
VRK3-220ENST00000600259 OSMRQ99650 979 aa6.96□□□□□ -1.3
VRK3-220ENST00000600259 APOL5Q9BWW9 433 aa6.96□□□□□ -1.3
VRK3-220ENST00000600259 ANO3Q9BYT9 981 aa6.96□□□□□ -1.3
VRK3-220ENST00000600259 ATP6V0A4Q9HBG4 840 aa6.96□□□□□ -1.3
VRK3-220ENST00000600259 NGRNQ9NPE2 291 aaKnown RBP6.96□□□□□ -1.3
VRK3-220ENST00000600259 BRPF3Q9ULD4 1205 aa6.96□□□□□ -1.3
VRK3-220ENST00000600259 GINS2Q9Y248 185 aa6.96□□□□□ -1.3
VRK3-220ENST00000600259 SLC12A7Q9Y666 1083 aa6.96□□□□□ -1.3
VRK3-220ENST00000600259 PLXNA4Q9HCM2 1894 aa6.96□□□□□ -1.3
VRK3-220ENST00000600259 MYO15AQ9UKN7 3530 aa6.95□□□□□ -1.3
VRK3-220ENST00000600259 KIAA1671Q9BY89 1806 aa6.95□□□□□ -1.3
VRK3-220ENST00000600259 FSD2A1L4K1 749 aa6.95□□□□□ -1.3
VRK3-220ENST00000600259 DENND3A2RUS2 1198 aa6.95□□□□□ -1.3
VRK3-220ENST00000600259 SMCO2A6NFE2 343 aa6.95□□□□□ -1.3
VRK3-220ENST00000600259 C2orf71A6NGG8 1288 aa6.95□□□□□ -1.3
VRK3-220ENST00000600259 C2CD4DB7Z1M9 353 aa6.95□□□□□ -1.3
VRK3-220ENST00000600259 H0Y858 1186 aa6.95□□□□□ -1.3
VRK3-220ENST00000600259 DDX39AO00148 427 aaKnown RBP6.95□□□□□ -1.3
VRK3-220ENST00000600259 IPO5O00410 1097 aaKnown RBP6.95□□□□□ -1.3
VRK3-220ENST00000600259 GALR2O43603 387 aaPredicted RBP6.95□□□□□ -1.3
VRK3-220ENST00000600259 ZNF862O60290 1169 aa6.95□□□□□ -1.3
VRK3-220ENST00000600259 GFRA3O60609 400 aa6.95□□□□□ -1.3
VRK3-220ENST00000600259 CLASP2O75122 1294 aaKnown RBP6.95□□□□□ -1.3
VRK3-220ENST00000600259 BRD1O95696 1058 aa6.95□□□□□ -1.3
VRK3-220ENST00000600259 IBSPP21815 317 aaPredicted RBP6.95□□□□□ -1.3
VRK3-220ENST00000600259 EIF4BP23588 611 aaKnown RBP6.95□□□□□ -1.3
VRK3-220ENST00000600259 CDC27P30260 824 aa6.95□□□□□ -1.3
VRK3-220ENST00000600259 PBX3P40426 434 aa6.95□□□□□ -1.3
VRK3-220ENST00000600259 AP3B2Q13367 1082 aa6.95□□□□□ -1.3
VRK3-220ENST00000600259 ODR4Q5SWX8 454 aa6.95□□□□□ -1.3
VRK3-220ENST00000600259 SPOUT1Q5T280 376 aaKnown RBP6.95□□□□□ -1.3
VRK3-220ENST00000600259 FAM160B1Q5W0V3 765 aa6.95□□□□□ -1.3
VRK3-220ENST00000600259 KANK3Q6NY19 840 aa6.95□□□□□ -1.3
VRK3-220ENST00000600259 PPP1R18Q6NYC8 613 aa6.95□□□□□ -1.3
VRK3-220ENST00000600259 ASCL5Q7RTU5 278 aa6.95□□□□□ -1.3
VRK3-220ENST00000600259 PLA2G4DQ86XP0 818 aa6.95□□□□□ -1.3
VRK3-220ENST00000600259 SLC39A11Q8N1S5 342 aa6.95□□□□□ -1.3
VRK3-220ENST00000600259 TMEM105Q8N8V8 129 aa6.95□□□□□ -1.3
VRK3-220ENST00000600259 KREMEN2Q8NCW0 462 aa6.95□□□□□ -1.3
VRK3-220ENST00000600259 SLC22A17Q8WUG5 538 aa6.95□□□□□ -1.3
VRK3-220ENST00000600259 BBXQ8WY36 941 aaPredicted RBP6.95□□□□□ -1.3
VRK3-220ENST00000600259 LENG9Q96B70 501 aa6.95□□□□□ -1.3
VRK3-220ENST00000600259 CEP89Q96ST8 783 aa6.95□□□□□ -1.3
VRK3-220ENST00000600259 PPP1R16BQ96T49 567 aa6.95□□□□□ -1.3
VRK3-220ENST00000600259 TCF25Q9BQ70 676 aa6.95□□□□□ -1.3
VRK3-220ENST00000600259 ESYT1Q9BSJ8 1104 aa6.95□□□□□ -1.3
VRK3-220ENST00000600259 ADAM7Q9H2U9 754 aa6.95□□□□□ -1.3
VRK3-220ENST00000600259 SMOC2Q9H3U7 446 aa6.95□□□□□ -1.3
VRK3-220ENST00000600259 POMKQ9H5K3 350 aa6.95□□□□□ -1.3
VRK3-220ENST00000600259 ZNF302Q9NR11 478 aa6.95□□□□□ -1.3
VRK3-220ENST00000600259 BARHL2Q9NY43 387 aa6.95□□□□□ -1.3
VRK3-220ENST00000600259 SPG21Q9NZD8 308 aa6.95□□□□□ -1.3
VRK3-220ENST00000600259 PUF60Q9UHX1 559 aaKnown RBP6.95□□□□□ -1.3
VRK3-220ENST00000600259 HCFC2Q9Y5Z7 792 aa6.95□□□□□ -1.3
VRK3-220ENST00000600259 FNDC1Q4ZHG4 1894 aaPredicted RBP6.95□□□□□ -1.3
Retrieved 100 of 20,778 RNA–protein pairs in 22.3 ms