RNA–Protein interactions for RNA: ENST00000598355.1

TRIM28-213, Transcript of tripartite motif containing 28, humanhuman

TSL 2

Gene TRIM28, Length 714 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM28-213ENST00000598355 MAFO75444 373 aaPredicted RBP18.08■□□□□ 0.48
TRIM28-213ENST00000598355 SLITRK3O94933 977 aa18.08■□□□□ 0.48
TRIM28-213ENST00000598355 ARHGEF15O94989 841 aa18.08■□□□□ 0.48
TRIM28-213ENST00000598355 VTNP04004 478 aa18.08■□□□□ 0.48
TRIM28-213ENST00000598355 CA3P07451 260 aa18.08■□□□□ 0.48
TRIM28-213ENST00000598355 CD52P31358 61 aa18.08■□□□□ 0.48
TRIM28-213ENST00000598355 TXKP42681 527 aa18.08■□□□□ 0.48
TRIM28-213ENST00000598355 NBR1Q14596 966 aa18.08■□□□□ 0.48
TRIM28-213ENST00000598355 ZNF174Q15697 407 aa18.08■□□□□ 0.48
TRIM28-213ENST00000598355 MTERF2Q49AM1 385 aa18.08■□□□□ 0.48
TRIM28-213ENST00000598355 PLA2G4FQ68DD2 849 aa18.08■□□□□ 0.48
TRIM28-213ENST00000598355 LRRC71Q8N4P6 559 aa18.08■□□□□ 0.48
TRIM28-213ENST00000598355 TOP1MTQ969P6 601 aa18.08■□□□□ 0.48
TRIM28-213ENST00000598355 MAP7D2Q96T17 732 aa18.08■□□□□ 0.48
TRIM28-213ENST00000598355 ADAMTS10Q9H324 1103 aa18.08■□□□□ 0.48
TRIM28-213ENST00000598355 DHX33Q9H6R0 707 aaKnown RBP18.08■□□□□ 0.48
TRIM28-213ENST00000598355 CDHR5Q9HBB8 845 aa18.08■□□□□ 0.48
TRIM28-213ENST00000598355 ERVK-5Q9HDB9 667 aa18.08■□□□□ 0.48
TRIM28-213ENST00000598355 EIF4ENIF1Q9NRA8 985 aaKnown RBP18.08■□□□□ 0.48
TRIM28-213ENST00000598355 K7ELQ4 463 aaPredicted RBP18.07■□□□□ 0.48
TRIM28-213ENST00000598355 AMHP03971 560 aa18.07■□□□□ 0.48
TRIM28-213ENST00000598355 ATP2B1P20020 1258 aa18.07■□□□□ 0.48
TRIM28-213ENST00000598355 TMOD1P28289 359 aa18.07■□□□□ 0.48
TRIM28-213ENST00000598355 YWHABP31946 246 aaKnown RBP18.07■□□□□ 0.48
TRIM28-213ENST00000598355 FXR2P51116 673 aaKnown RBP eCLIP18.07■□□□□ 0.482e-16■■□□□ 12.4
TRIM28-213ENST00000598355 GPC3P51654 580 aa18.07■□□□□ 0.48
TRIM28-213ENST00000598355 CRYBB1P53674 252 aaPredicted RBP18.07■□□□□ 0.48
TRIM28-213ENST00000598355 CYP4A11Q02928 519 aa18.07■□□□□ 0.48
TRIM28-213ENST00000598355 DRP2Q13474 957 aa18.07■□□□□ 0.48
TRIM28-213ENST00000598355 GRIN2CQ14957 1233 aa18.07■□□□□ 0.48
TRIM28-213ENST00000598355 KIZQ2M2Z5 673 aa18.07■□□□□ 0.48
TRIM28-213ENST00000598355 RILPL1Q5EBL4 403 aa18.07■□□□□ 0.48
TRIM28-213ENST00000598355 TMCO2Q7Z6W1 182 aaPredicted RBP18.07■□□□□ 0.48
TRIM28-213ENST00000598355 CRIPAKQ8N1N5 446 aa18.07■□□□□ 0.48
TRIM28-213ENST00000598355 METTL13Q8N6R0 699 aa18.07■□□□□ 0.48
TRIM28-213ENST00000598355 SP7Q8TDD2 431 aaPredicted RBP18.07■□□□□ 0.48
TRIM28-213ENST00000598355 FAM161BQ96MY7 647 aa18.07■□□□□ 0.48
TRIM28-213ENST00000598355 CDX2Q99626 313 aaPredicted RBP18.07■□□□□ 0.48
TRIM28-213ENST00000598355 FTHL17Q9BXU8 183 aa18.07■□□□□ 0.48
TRIM28-213ENST00000598355 RC3H2Q9HBD1 1191 aaKnown RBP18.07■□□□□ 0.48
TRIM28-213ENST00000598355 PADI3Q9ULW8 664 aa18.07■□□□□ 0.48
TRIM28-213ENST00000598355 PCDHB6Q9Y5E3 794 aa18.07■□□□□ 0.48
TRIM28-213ENST00000598355 ATG2AQ2TAZ0 1938 aa18.06■□□□□ 0.48
TRIM28-213ENST00000598355 DDX11L8A8MPP1 907 aa18.06■□□□□ 0.48
TRIM28-213ENST00000598355 LAD1O00515 517 aa18.06■□□□□ 0.48
TRIM28-213ENST00000598355 TLL1O43897 1013 aa18.06■□□□□ 0.48
TRIM28-213ENST00000598355 SPATA31C1P0DKV0 1188 aa18.06■□□□□ 0.48
TRIM28-213ENST00000598355 NPEPPSP55786 919 aa18.06■□□□□ 0.48
TRIM28-213ENST00000598355 PAK2Q13177 524 aa18.06■□□□□ 0.48
TRIM28-213ENST00000598355 CTTNQ14247 550 aaKnown RBP18.06■□□□□ 0.48
TRIM28-213ENST00000598355 PPP2R2DQ66LE6 453 aa18.06■□□□□ 0.48
TRIM28-213ENST00000598355 MYOCDQ8IZQ8 938 aa18.06■□□□□ 0.48
TRIM28-213ENST00000598355 ZNF579Q8NAF0 562 aaKnown RBP18.06■□□□□ 0.48
TRIM28-213ENST00000598355 RAD9AQ99638 391 aa18.06■□□□□ 0.48
TRIM28-213ENST00000598355 OSMRQ99650 979 aa18.06■□□□□ 0.48
TRIM28-213ENST00000598355 SH2D3AQ9BRG2 576 aa18.06■□□□□ 0.48
TRIM28-213ENST00000598355 TSPYL2Q9H2G4 693 aaPredicted RBP18.06■□□□□ 0.48
TRIM28-213ENST00000598355 TMX1Q9H3N1 280 aa18.06■□□□□ 0.48
TRIM28-213ENST00000598355 SLC28A3Q9HAS3 691 aa18.06■□□□□ 0.48
TRIM28-213ENST00000598355 NOC2LQ9Y3T9 749 aaKnown RBP18.06■□□□□ 0.48
TRIM28-213ENST00000598355 PRUNE2Q8WUY3 3088 aa18.06■□□□□ 0.48
TRIM28-213ENST00000598355 LCHNA4D1U4 455 aa18.05■□□□□ 0.48
TRIM28-213ENST00000598355 H3BQV1 296 aa18.05■□□□□ 0.48
TRIM28-213ENST00000598355 GAS2O43903 313 aaKnown RBP18.05■□□□□ 0.48
TRIM28-213ENST00000598355 RFC5P40937 340 aa18.05■□□□□ 0.48
TRIM28-213ENST00000598355 PRPHP41219 470 aa18.05■□□□□ 0.48
TRIM28-213ENST00000598355 TAP1Q03518 808 aa18.05■□□□□ 0.48
TRIM28-213ENST00000598355 LARP1BQ659C4 914 aaKnown RBP18.05■□□□□ 0.48
TRIM28-213ENST00000598355 RTN4RL1Q86UN2 441 aaPredicted RBP18.05■□□□□ 0.48
TRIM28-213ENST00000598355 FAM228AQ86W67 206 aa18.05■□□□□ 0.48
TRIM28-213ENST00000598355 IGSF22Q8N9C0 903 aa18.05■□□□□ 0.48
TRIM28-213ENST00000598355 JPH2Q9BR39 696 aaPredicted RBP18.05■□□□□ 0.48
TRIM28-213ENST00000598355 POLR3CQ9BUI4 534 aaPredicted RBP18.05■□□□□ 0.48
TRIM28-213ENST00000598355 TUFT1Q9NNX1 390 aa18.05■□□□□ 0.48
TRIM28-213ENST00000598355 ANKEF1Q9NU02 776 aa18.05■□□□□ 0.48
TRIM28-213ENST00000598355 AKT3Q9Y243 479 aa18.05■□□□□ 0.48
TRIM28-213ENST00000598355 ENPP3O14638 875 aa18.04■□□□□ 0.48
TRIM28-213ENST00000598355 RPS6KA5O75582 802 aa18.04■□□□□ 0.48
TRIM28-213ENST00000598355 MUTP22033 750 aa18.04■□□□□ 0.48
TRIM28-213ENST00000598355 NLRP11P59045 1033 aaKnown RBP18.04■□□□□ 0.48
TRIM28-213ENST00000598355 ATP2C1P98194 919 aaPredicted RBP18.04■□□□□ 0.48
TRIM28-213ENST00000598355 PTGDRQ13258 359 aa18.04■□□□□ 0.48
TRIM28-213ENST00000598355 ODR4Q5SWX8 454 aa18.04■□□□□ 0.48
TRIM28-213ENST00000598355 MCTP1Q6DN14 999 aa18.04■□□□□ 0.48
TRIM28-213ENST00000598355 EXOC8Q8IYI6 725 aa18.04■□□□□ 0.48
TRIM28-213ENST00000598355 CEP170P1Q96L14 293 aa18.04■□□□□ 0.48
TRIM28-213ENST00000598355 SUGCTQ9HAC7 445 aa18.04■□□□□ 0.48
TRIM28-213ENST00000598355 INSL6Q9Y581 213 aa18.04■□□□□ 0.48
TRIM28-213ENST00000598355 PRRC2BQ5JSZ5 2229 aaKnown RBP18.03■□□□□ 0.48
TRIM28-213ENST00000598355 ZBTB39O15060 712 aa18.03■□□□□ 0.48
TRIM28-213ENST00000598355 MGEA5O60502 916 aa18.03■□□□□ 0.48
TRIM28-213ENST00000598355 MED24O75448 989 aa18.03■□□□□ 0.48
TRIM28-213ENST00000598355 XRCC6P12956 609 aaKnown RBP eCLIP18.03■□□□□ 0.48
TRIM28-213ENST00000598355 DARSP14868 501 aaKnown RBP18.03■□□□□ 0.48
TRIM28-213ENST00000598355 PDCP20941 246 aa18.03■□□□□ 0.48
TRIM28-213ENST00000598355 EIF4BP23588 611 aaKnown RBP18.03■□□□□ 0.48
TRIM28-213ENST00000598355 RPA1P27694 616 aa18.03■□□□□ 0.48
TRIM28-213ENST00000598355 TECP42680 631 aa18.03■□□□□ 0.48
TRIM28-213ENST00000598355 RARRES1P49788 294 aa18.03■□□□□ 0.48
TRIM28-213ENST00000598355 CDC42EP1Q00587 391 aa18.03■□□□□ 0.48
Retrieved 100 of 20,778 RNA–protein pairs in 24.6 ms