RNA–Protein interactions for RNA: ENST00000597618.5

TRIM28-210, Transcript of tripartite motif containing 28, humanhuman

TSL 2

Gene TRIM28, Length 609 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM28-210ENST00000597618 MRPL43Q8N983 215 aaKnown RBP11.57□□□□□ -0.56
TRIM28-210ENST00000597618 FLCNQ8NFG4 579 aa11.57□□□□□ -0.56
TRIM28-210ENST00000597618 NCOA7Q8NI08 942 aa11.57□□□□□ -0.56
TRIM28-210ENST00000597618 CASD1Q96PB1 797 aa11.57□□□□□ -0.56
TRIM28-210ENST00000597618 LIMD1Q9UGP4 676 aa11.57□□□□□ -0.56
TRIM28-210ENST00000597618 HBP1O60381 514 aa11.56□□□□□ -0.56
TRIM28-210ENST00000597618 CLASP2O75122 1294 aaKnown RBP11.56□□□□□ -0.56
TRIM28-210ENST00000597618 CYP21A2P08686 494 aa11.56□□□□□ -0.56
TRIM28-210ENST00000597618 AOC1P19801 751 aa11.56□□□□□ -0.56
TRIM28-210ENST00000597618 PBX3P40426 434 aa11.56□□□□□ -0.56
TRIM28-210ENST00000597618 GNAQP50148 359 aa11.56□□□□□ -0.56
TRIM28-210ENST00000597618 CACNA1BQ00975 2339 aa11.56□□□□□ -0.56
TRIM28-210ENST00000597618 ANGPT1Q15389 498 aa11.56□□□□□ -0.56
TRIM28-210ENST00000597618 UBE2SQ16763 222 aa11.56□□□□□ -0.56
TRIM28-210ENST00000597618 KIZQ2M2Z5 673 aa11.56□□□□□ -0.56
TRIM28-210ENST00000597618 ATAT1Q5SQI0 421 aa11.56□□□□□ -0.56
TRIM28-210ENST00000597618 RARS2Q5T160 578 aaKnown RBP11.56□□□□□ -0.56
TRIM28-210ENST00000597618 FAM160B1Q5W0V3 765 aa11.56□□□□□ -0.56
TRIM28-210ENST00000597618 DIEXFQ68CQ4 756 aaKnown RBP11.56□□□□□ -0.56
TRIM28-210ENST00000597618 LRRC55Q6ZSA7 311 aa11.56□□□□□ -0.56
TRIM28-210ENST00000597618 FAM228AQ86W67 206 aa11.56□□□□□ -0.56
TRIM28-210ENST00000597618 CHD1LQ86WJ1 897 aa11.56□□□□□ -0.56
TRIM28-210ENST00000597618 ZNF654Q8IZM8 581 aa11.56□□□□□ -0.56
TRIM28-210ENST00000597618 OSMRQ99650 979 aa11.56□□□□□ -0.56
TRIM28-210ENST00000597618 MXRA8Q9BRK3 442 aa11.56□□□□□ -0.56
TRIM28-210ENST00000597618 CDHR5Q9HBB8 845 aa11.56□□□□□ -0.56
TRIM28-210ENST00000597618 DBR1Q9UK59 544 aaKnown RBP11.56□□□□□ -0.56
TRIM28-210ENST00000597618 PCDHA6Q9UN73 950 aa11.56□□□□□ -0.56
TRIM28-210ENST00000597618 PCDHA8Q9Y5H6 950 aa11.56□□□□□ -0.56
TRIM28-210ENST00000597618 IGKV6D-21A0A0A0MT36 114 aa11.55□□□□□ -0.56
TRIM28-210ENST00000597618 BACH1O14867 736 aa11.55□□□□□ -0.56
TRIM28-210ENST00000597618 ATG7O95352 703 aa11.55□□□□□ -0.56
TRIM28-210ENST00000597618 EOMESO95936 686 aa11.55□□□□□ -0.56
TRIM28-210ENST00000597618 WEE2P0C1S8 567 aa11.55□□□□□ -0.56
TRIM28-210ENST00000597618 CA8P35219 290 aa11.55□□□□□ -0.56
TRIM28-210ENST00000597618 DSC3Q14574 896 aa11.55□□□□□ -0.56
TRIM28-210ENST00000597618 ZNF484Q5JVG2 852 aa11.55□□□□□ -0.56
TRIM28-210ENST00000597618 B4GALNT3Q6L9W6 998 aa11.55□□□□□ -0.56
TRIM28-210ENST00000597618 SMC5Q8IY18 1101 aa11.55□□□□□ -0.56
TRIM28-210ENST00000597618 SLC39A11Q8N1S5 342 aa11.55□□□□□ -0.56
TRIM28-210ENST00000597618 TMEM87AQ8NBN3 555 aa11.55□□□□□ -0.56
TRIM28-210ENST00000597618 ACSF2Q96CM8 615 aaPredicted RBP11.55□□□□□ -0.56
TRIM28-210ENST00000597618 RTP3Q9BQQ7 232 aa11.55□□□□□ -0.56
TRIM28-210ENST00000597618 MYL10Q9BUA6 226 aa11.55□□□□□ -0.56
TRIM28-210ENST00000597618 IL25Q9H293 177 aa11.55□□□□□ -0.56
TRIM28-210ENST00000597618 SEMA4AQ9H3S1 761 aa11.55□□□□□ -0.56
TRIM28-210ENST00000597618 CYP26B1Q9NR63 512 aa11.55□□□□□ -0.56
TRIM28-210ENST00000597618 CEP250Q9BV73 2442 aa11.55□□□□□ -0.56
TRIM28-210ENST00000597618 E7EWF7 191 aa11.54□□□□□ -0.56
TRIM28-210ENST00000597618 PLEKHA8P1O95397 391 aa11.54□□□□□ -0.56
TRIM28-210ENST00000597618 C22orf31O95567 290 aa11.54□□□□□ -0.56
TRIM28-210ENST00000597618 ITGB3BPQ13352 177 aaPredicted RBP11.54□□□□□ -0.56
TRIM28-210ENST00000597618 TDGQ13569 410 aa11.54□□□□□ -0.56
TRIM28-210ENST00000597618 CEP55Q53EZ4 464 aa11.54□□□□□ -0.56
TRIM28-210ENST00000597618 DGLUCYQ7Z3D6 616 aa11.54□□□□□ -0.56
TRIM28-210ENST00000597618 DTWD2Q8NBA8 298 aa11.54□□□□□ -0.56
TRIM28-210ENST00000597618 KCNG4Q8TDN1 519 aa11.54□□□□□ -0.56
TRIM28-210ENST00000597618 IGDCC4Q8TDY8 1250 aa11.54□□□□□ -0.56
TRIM28-210ENST00000597618 PPP1R16BQ96T49 567 aa11.54□□□□□ -0.56
TRIM28-210ENST00000597618 MRPL9Q9BYD2 267 aaKnown RBP11.54□□□□□ -0.56
TRIM28-210ENST00000597618 AGO4Q9HCK5 861 aaKnown RBP11.54□□□□□ -0.56
TRIM28-210ENST00000597618 RNF19AQ9NV58 838 aa11.54□□□□□ -0.56
TRIM28-210ENST00000597618 FBXL21Q9UKT6 434 aa11.54□□□□□ -0.56
TRIM28-210ENST00000597618 LOXHD1Q8IVV2 1947 aa11.54□□□□□ -0.56
TRIM28-210ENST00000597618 ZC3H11BA0A1B0GUI2 810 aaPredicted RBP11.53□□□□□ -0.56
TRIM28-210ENST00000597618 CARNS1A5YM72 827 aa11.53□□□□□ -0.56
TRIM28-210ENST00000597618 ZBTB42B2RXF5 422 aa11.53□□□□□ -0.56
TRIM28-210ENST00000597618 GPR32O75388 356 aa11.53□□□□□ -0.56
TRIM28-210ENST00000597618 CXCL14O95715 111 aa11.53□□□□□ -0.56
TRIM28-210ENST00000597618 LMNAP02545 664 aaKnown RBP11.53□□□□□ -0.56
TRIM28-210ENST00000597618 VTNP04004 478 aa11.53□□□□□ -0.56
TRIM28-210ENST00000597618 ARP10275 920 aa11.53□□□□□ -0.56
TRIM28-210ENST00000597618 ZSCAN20P17040 1043 aaPredicted RBP11.53□□□□□ -0.56
TRIM28-210ENST00000597618 NPR3P17342 541 aa11.53□□□□□ -0.56
TRIM28-210ENST00000597618 ALDH7A1P49419 539 aaKnown RBP11.53□□□□□ -0.56
TRIM28-210ENST00000597618 ANTXR2P58335 489 aa11.53□□□□□ -0.56
TRIM28-210ENST00000597618 NUCB1Q02818 461 aa11.53□□□□□ -0.56
TRIM28-210ENST00000597618 GIT2Q14161 759 aa11.53□□□□□ -0.56
TRIM28-210ENST00000597618 PDXDC2PQ6P474 469 aa11.53□□□□□ -0.56
TRIM28-210ENST00000597618 ABHD15Q6UXT9 468 aa11.53□□□□□ -0.56
TRIM28-210ENST00000597618 CCDC149Q6ZUS6 474 aa11.53□□□□□ -0.56
TRIM28-210ENST00000597618 OTOP3Q7RTS5 596 aa11.53□□□□□ -0.56
TRIM28-210ENST00000597618 HEATR3Q7Z4Q2 680 aa11.53□□□□□ -0.56
TRIM28-210ENST00000597618 ECHDC2Q86YB7 292 aa11.53□□□□□ -0.56
TRIM28-210ENST00000597618 TEX2Q8IWB9 1127 aa11.53□□□□□ -0.56
TRIM28-210ENST00000597618 MB21D2Q8IYB1 491 aaPredicted RBP11.53□□□□□ -0.56
TRIM28-210ENST00000597618 ZNF710Q8N1W2 664 aa11.53□□□□□ -0.56
TRIM28-210ENST00000597618 SRBD1Q8N5C6 995 aaKnown RBP11.53□□□□□ -0.56
TRIM28-210ENST00000597618 C12orf76Q8N812 135 aaPredicted RBP11.53□□□□□ -0.56
TRIM28-210ENST00000597618 CYP2W1Q8TAV3 490 aa11.53□□□□□ -0.56
TRIM28-210ENST00000597618 RSPH1Q8WYR4 309 aa11.53□□□□□ -0.56
TRIM28-210ENST00000597618 RMDN1Q96DB5 314 aa11.53□□□□□ -0.56
TRIM28-210ENST00000597618 TMEM169Q96HH4 297 aa11.53□□□□□ -0.56
TRIM28-210ENST00000597618 LY9Q9HBG7 655 aa11.53□□□□□ -0.56
TRIM28-210ENST00000597618 ZNF302Q9NR11 478 aa11.53□□□□□ -0.56
TRIM28-210ENST00000597618 DUSP12Q9UNI6 340 aa11.53□□□□□ -0.56
TRIM28-210ENST00000597618 IRAK3Q9Y616 596 aa11.53□□□□□ -0.56
TRIM28-210ENST00000597618 MYO10Q9HD67 2058 aa11.53□□□□□ -0.56
TRIM28-210ENST00000597618 TPRP12270 2363 aaKnown RBP11.53□□□□□ -0.56
TRIM28-210ENST00000597618 MED19A0JLT2 244 aaPredicted RBP11.52□□□□□ -0.57
Retrieved 100 of 20,778 RNA–protein pairs in 97 ms