RNA–Protein interactions for RNA: ENST00000596842.5

UPF1-204, Transcript of UPF1, RNA helicase and ATPase, humanhuman

TSL 2

Gene UPF1, Length 3,825 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus, Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF1-204ENST00000596842 ZYXQ15942 572 aaKnown RBP16.59■□□□□ 0.25
UPF1-204ENST00000596842 UAP1Q16222 522 aaPredicted RBP16.59■□□□□ 0.25
UPF1-204ENST00000596842 CYFIP2Q96F07 1278 aa16.59■□□□□ 0.25
UPF1-204ENST00000596842 IRAK4Q9NWZ3 460 aa16.59■□□□□ 0.25
UPF1-204ENST00000596842 ABCB11O95342 1321 aa16.59■□□□□ 0.25
UPF1-204ENST00000596842 QPCTQ16769 361 aa16.59■□□□□ 0.25
UPF1-204ENST00000596842 COBLL1Q53SF7 1204 aa16.59■□□□□ 0.25
UPF1-204ENST00000596842 KCNV1Q6PIU1 500 aa16.59■□□□□ 0.25
UPF1-204ENST00000596842 PCIF1Q9H4Z3 704 aa16.59■□□□□ 0.25
UPF1-204ENST00000596842 ZBTB21Q9ULJ3 1066 aa16.59■□□□□ 0.25
UPF1-204ENST00000596842 EIF4E1BA6NMX2 242 aaKnown RBP16.58■□□□□ 0.25
UPF1-204ENST00000596842 ATP2B4P23634 1241 aa16.58■□□□□ 0.25
UPF1-204ENST00000596842 SEPT2Q15019 361 aa16.58■□□□□ 0.25
UPF1-204ENST00000596842 ELMO3Q96BJ8 720 aa16.58■□□□□ 0.25
UPF1-204ENST00000596842 GGT7Q9UJ14 662 aa16.58■□□□□ 0.25
UPF1-204ENST00000596842 RBAK-RBAKDNI3L0D1 243 aa16.58■□□□□ 0.24
UPF1-204ENST00000596842 FAM186BQ8IYM0 893 aa16.58■□□□□ 0.24
UPF1-204ENST00000596842 MGARPQ8TDB4 240 aa16.58■□□□□ 0.24
UPF1-204ENST00000596842 TMBIM4Q9HC24 238 aa16.58■□□□□ 0.24
UPF1-204ENST00000596842 RABGAP1Q9Y3P9 1069 aa16.58■□□□□ 0.24
UPF1-204ENST00000596842 DDX3XO00571 662 aaKnown RBP eCLIP16.58■□□□□ 0.24
UPF1-204ENST00000596842 PPP1R12BO60237 982 aaPredicted RBP16.58■□□□□ 0.24
UPF1-204ENST00000596842 SERPINB2P05120 415 aa16.58■□□□□ 0.24
UPF1-204ENST00000596842 RPL13P26373 211 aaKnown RBP16.58■□□□□ 0.24
UPF1-204ENST00000596842 SSR1P43307 286 aaKnown RBP16.58■□□□□ 0.24
UPF1-204ENST00000596842 SLC35G2Q8TBE7 412 aa16.58■□□□□ 0.24
UPF1-204ENST00000596842 VEZTQ9HBM0 779 aa16.58■□□□□ 0.24
UPF1-204ENST00000596842 CNOT8Q9UFF9 292 aaKnown RBP16.58■□□□□ 0.24
UPF1-204ENST00000596842 PNMA2Q9UL42 364 aa16.58■□□□□ 0.24
UPF1-204ENST00000596842 PPP1R9AQ9ULJ8 1098 aa16.58■□□□□ 0.24
UPF1-204ENST00000596842 GMNCA6NCL1 334 aa16.57■□□□□ 0.24
UPF1-204ENST00000596842 TNFAIP3P21580 790 aa16.57■□□□□ 0.24
UPF1-204ENST00000596842 DRAP1Q14919 205 aaPredicted RBP16.57■□□□□ 0.24
UPF1-204ENST00000596842 GPATCH4Q5T3I0 446 aaKnown RBP16.57■□□□□ 0.24
UPF1-204ENST00000596842 RUFY4Q6ZNE9 571 aa16.57■□□□□ 0.24
UPF1-204ENST00000596842 LMBR1Q8WVP7 490 aa16.57■□□□□ 0.24
UPF1-204ENST00000596842 SYN2Q92777 582 aaPredicted RBP16.57■□□□□ 0.24
UPF1-204ENST00000596842 PBKQ96KB5 322 aa16.57■□□□□ 0.24
UPF1-204ENST00000596842 DBNDD1Q9H9R9 158 aa16.57■□□□□ 0.24
UPF1-204ENST00000596842 DNAJC17Q9NVM6 304 aaKnown RBP16.57■□□□□ 0.24
UPF1-204ENST00000596842 DNAJC12Q9UKB3 198 aa16.57■□□□□ 0.24
UPF1-204ENST00000596842 FAM86B1E9PN63 330 aa16.57■□□□□ 0.24
UPF1-204ENST00000596842 CTNND1O60716 968 aaKnown RBP16.57■□□□□ 0.24
UPF1-204ENST00000596842 FAM86B2P0C5J1 330 aa16.57■□□□□ 0.24
UPF1-204ENST00000596842 GCFC2P16383 781 aaKnown RBP16.57■□□□□ 0.24
UPF1-204ENST00000596842 SLC12A3P55017 1021 aa16.57■□□□□ 0.24
UPF1-204ENST00000596842 ADCY1Q08828 1119 aa16.57■□□□□ 0.24
UPF1-204ENST00000596842 CCDC38Q502W7 563 aa16.57■□□□□ 0.24
UPF1-204ENST00000596842 CTTNBP2NLQ9P2B4 639 aa16.57■□□□□ 0.24
UPF1-204ENST00000596842 POLD1P28340 1107 aa16.57■□□□□ 0.24
UPF1-204ENST00000596842 FMO2Q99518 471 aa16.57■□□□□ 0.24
UPF1-204ENST00000596842 TAS2R14Q9NYV8 317 aa16.57■□□□□ 0.24
UPF1-204ENST00000596842 PCDHA2Q9Y5H9 948 aa16.57■□□□□ 0.24
UPF1-204ENST00000596842 PHLPP1O60346 1717 aa16.56■□□□□ 0.24
UPF1-204ENST00000596842 CNTNAP4Q9C0A0 1308 aa16.56■□□□□ 0.24
UPF1-204ENST00000596842 SHMT1P34896 483 aa16.56■□□□□ 0.24
UPF1-204ENST00000596842 RBM17Q96I25 401 aaKnown RBP16.56■□□□□ 0.24
UPF1-204ENST00000596842 KCNQ5Q9NR82 932 aa16.56■□□□□ 0.24
UPF1-204ENST00000596842 MYH1P12882 1939 aa16.56■□□□□ 0.24
UPF1-204ENST00000596842 hCG_1984214I3L0E3 225 aa16.56■□□□□ 0.24
UPF1-204ENST00000596842 FAM107AO95990 144 aa16.56■□□□□ 0.24
UPF1-204ENST00000596842 HSPA9P38646 679 aaKnown RBP16.56■□□□□ 0.24
UPF1-204ENST00000596842 CCDC13Q8IYE1 715 aa16.56■□□□□ 0.24
UPF1-204ENST00000596842 ZNF713Q8N859 430 aaPredicted RBP16.56■□□□□ 0.24
UPF1-204ENST00000596842 MLXIPLQ9NP71 852 aa16.56■□□□□ 0.24
UPF1-204ENST00000596842 DONSONQ9NYP3 566 aa16.56■□□□□ 0.24
UPF1-204ENST00000596842 ODF2LQ9ULJ1 636 aa16.56■□□□□ 0.24
UPF1-204ENST00000596842 NHSL1Q5SYE7 1610 aa16.56■□□□□ 0.24
UPF1-204ENST00000596842 ATMINO43313 823 aaPredicted RBP16.56■□□□□ 0.24
UPF1-204ENST00000596842 PPP2R2AP63151 447 aa16.56■□□□□ 0.24
UPF1-204ENST00000596842 ORC2Q13416 577 aaPredicted RBP16.56■□□□□ 0.24
UPF1-204ENST00000596842 CUL1Q13616 776 aa16.56■□□□□ 0.24
UPF1-204ENST00000596842 CERKLQ49MI3 558 aaPredicted RBP16.56■□□□□ 0.24
UPF1-204ENST00000596842 CCDC174Q6PII3 467 aa16.56■□□□□ 0.24
UPF1-204ENST00000596842 PHLDB2Q86SQ0 1253 aa16.56■□□□□ 0.24
UPF1-204ENST00000596842 TBC1D22AQ8WUA7 517 aa16.56■□□□□ 0.24
UPF1-204ENST00000596842 RUBCNQ92622 972 aa16.56■□□□□ 0.24
UPF1-204ENST00000596842 HOOK2Q96ED9 719 aa16.56■□□□□ 0.24
UPF1-204ENST00000596842 P2RX7Q99572 595 aaKnown RBP16.56■□□□□ 0.24
UPF1-204ENST00000596842 EXOC3O60645 756 aa16.55■□□□□ 0.24
UPF1-204ENST00000596842 VIMP08670 466 aaKnown RBP16.55■□□□□ 0.24
UPF1-204ENST00000596842 PALB2Q86YC2 1186 aa16.55■□□□□ 0.24
UPF1-204ENST00000596842 EML1O00423 815 aa16.55■□□□□ 0.24
UPF1-204ENST00000596842 CAND2O75155 1236 aa16.55■□□□□ 0.24
UPF1-204ENST00000596842 TNFRSF8P28908 595 aa16.55■□□□□ 0.24
UPF1-204ENST00000596842 HOXD13P35453 343 aa16.55■□□□□ 0.24
UPF1-204ENST00000596842 MESDQ14696 234 aa16.55■□□□□ 0.24
UPF1-204ENST00000596842 OTUD6AQ7L8S5 288 aa16.55■□□□□ 0.24
UPF1-204ENST00000596842 SLFN12Q8IYM2 578 aa16.55■□□□□ 0.24
UPF1-204ENST00000596842 CACNA2D3Q8IZS8 1091 aa16.55■□□□□ 0.24
UPF1-204ENST00000596842 CERS5Q8N5B7 392 aa16.55■□□□□ 0.24
UPF1-204ENST00000596842 RAPGEF5Q92565 580 aa16.55■□□□□ 0.24
UPF1-204ENST00000596842 SLC35C1Q96A29 364 aa16.55■□□□□ 0.24
UPF1-204ENST00000596842 THAP2Q9H0W7 228 aa16.55■□□□□ 0.24
UPF1-204ENST00000596842 HAUS2Q9NVX0 235 aa16.55■□□□□ 0.24
UPF1-204ENST00000596842 CCDC88AQ3V6T2 1871 aa16.55■□□□□ 0.24
UPF1-204ENST00000596842 IGSF9BQ9UPX0 1349 aa16.55■□□□□ 0.24
UPF1-204ENST00000596842 SHBGP04278 402 aa16.55■□□□□ 0.24
UPF1-204ENST00000596842 SPRED3Q2MJR0 410 aa16.55■□□□□ 0.24
UPF1-204ENST00000596842 ARHGEF26Q96DR7 871 aa16.55■□□□□ 0.24
Retrieved 100 of 20,778 RNA–protein pairs in 20.8 ms