RNA–Protein interactions for RNA: ENST00000596104.5

LIG1-209, Transcript of DNA ligase 1, humanhuman

TSL 3

Gene LIG1, Length 531 nt, Biotype processed transcript, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIG1-209ENST00000596104 hCG_1984214I3L0E3 225 aa11.34□□□□□ -0.59
LIG1-209ENST00000596104 GPR32O75388 356 aa11.34□□□□□ -0.59
LIG1-209ENST00000596104 LAG3P18627 525 aa11.34□□□□□ -0.59
LIG1-209ENST00000596104 VCPP55072 806 aaKnown RBP11.34□□□□□ -0.59
LIG1-209ENST00000596104 APOBRQ0VD83 1088 aa11.34□□□□□ -0.59
LIG1-209ENST00000596104 RTN1Q16799 776 aa11.34□□□□□ -0.59
LIG1-209ENST00000596104 SWSAP1Q6NVH7 229 aa11.34□□□□□ -0.59
LIG1-209ENST00000596104 ANKRD54Q6NXT1 300 aa11.34□□□□□ -0.59
LIG1-209ENST00000596104 LRRC55Q6ZSA7 311 aa11.34□□□□□ -0.59
LIG1-209ENST00000596104 PLA2G4DQ86XP0 818 aa11.34□□□□□ -0.59
LIG1-209ENST00000596104 ZNF713Q8N859 430 aaPredicted RBP11.34□□□□□ -0.59
LIG1-209ENST00000596104 MRPS27Q92552 414 aaKnown RBP11.34□□□□□ -0.59
LIG1-209ENST00000596104 PPP1R16BQ96T49 567 aa11.34□□□□□ -0.59
LIG1-209ENST00000596104 OSMRQ99650 979 aa11.34□□□□□ -0.59
LIG1-209ENST00000596104 TMEM117Q9H0C3 514 aa11.34□□□□□ -0.59
LIG1-209ENST00000596104 ATP6V0A4Q9HBG4 840 aa11.34□□□□□ -0.59
LIG1-209ENST00000596104 ZNF302Q9NR11 478 aa11.34□□□□□ -0.59
LIG1-209ENST00000596104 FAM217BQ9NTX9 383 aaPredicted RBP11.34□□□□□ -0.59
LIG1-209ENST00000596104 BRPF3Q9ULD4 1205 aa11.34□□□□□ -0.59
LIG1-209ENST00000596104 V9GY48 417 aaPredicted RBP11.34□□□□□ -0.59
LIG1-209ENST00000596104 KAT6AQ92794 2004 aa11.33□□□□□ -0.6
LIG1-209ENST00000596104 KIAA1671Q9BY89 1806 aa11.33□□□□□ -0.6
LIG1-209ENST00000596104 HIDE1A8MVS5 230 aa11.33□□□□□ -0.6
LIG1-209ENST00000596104 IPO5O00410 1097 aaKnown RBP11.33□□□□□ -0.6
LIG1-209ENST00000596104 ADAMTS3O15072 1205 aa11.33□□□□□ -0.6
LIG1-209ENST00000596104 VTNP04004 478 aa11.33□□□□□ -0.6
LIG1-209ENST00000596104 CYP3A4P08684 503 aa11.33□□□□□ -0.6
LIG1-209ENST00000596104 ZNF76P36508 570 aa11.33□□□□□ -0.6
LIG1-209ENST00000596104 EXOSC10Q01780 885 aaKnown RBP11.33□□□□□ -0.6
LIG1-209ENST00000596104 PTPN21Q16825 1174 aa11.33□□□□□ -0.6
LIG1-209ENST00000596104 PLPP4Q5VZY2 271 aa11.33□□□□□ -0.6
LIG1-209ENST00000596104 MIS18BP1Q6P0N0 1132 aa11.33□□□□□ -0.6
LIG1-209ENST00000596104 SYNE3Q6ZMZ3 975 aa11.33□□□□□ -0.6
LIG1-209ENST00000596104 LINC01465Q8N7H1 131 aa11.33□□□□□ -0.6
LIG1-209ENST00000596104 BBXQ8WY36 941 aaPredicted RBP11.33□□□□□ -0.6
LIG1-209ENST00000596104 YTHDC1Q96MU7 727 aaKnown RBP11.33□□□□□ -0.6
LIG1-209ENST00000596104 CASD1Q96PB1 797 aa11.33□□□□□ -0.6
LIG1-209ENST00000596104 TCF25Q9BQ70 676 aa11.33□□□□□ -0.6
LIG1-209ENST00000596104 GLT8D2Q9H1C3 349 aa11.33□□□□□ -0.6
LIG1-209ENST00000596104 MAFBQ9Y5Q3 323 aaPredicted RBP11.33□□□□□ -0.6
LIG1-209ENST00000596104 CACNA1HO95180 2353 aa11.33□□□□□ -0.6
LIG1-209ENST00000596104 ZBTB43O43298 467 aa11.32□□□□□ -0.6
LIG1-209ENST00000596104 HOXB8P17481 243 aaPredicted RBP11.32□□□□□ -0.6
LIG1-209ENST00000596104 CDC27P30260 824 aa11.32□□□□□ -0.6
LIG1-209ENST00000596104 AVPR2P30518 371 aa11.32□□□□□ -0.6
LIG1-209ENST00000596104 TECP42680 631 aa11.32□□□□□ -0.6
LIG1-209ENST00000596104 CLCN3P51790 818 aa11.32□□□□□ -0.6
LIG1-209ENST00000596104 JAKMIP3Q5VZ66 844 aa11.32□□□□□ -0.6
LIG1-209ENST00000596104 ZNF746Q6NUN9 644 aaPredicted RBP11.32□□□□□ -0.6
LIG1-209ENST00000596104 KCNT2Q6UVM3 1135 aa11.32□□□□□ -0.6
LIG1-209ENST00000596104 TCEANC2Q96MN5 208 aa11.32□□□□□ -0.6
LIG1-209ENST00000596104 ADAMTS10Q9H324 1103 aa11.32□□□□□ -0.6
LIG1-209ENST00000596104 NGRNQ9NPE2 291 aaKnown RBP11.32□□□□□ -0.6
LIG1-209ENST00000596104 ANO2Q9NQ90 1003 aa11.32□□□□□ -0.6
LIG1-209ENST00000596104 PUF60Q9UHX1 559 aaKnown RBP11.32□□□□□ -0.6
LIG1-209ENST00000596104 ESYT2A0FGR8 921 aa11.31□□□□□ -0.6
LIG1-209ENST00000596104 HOXA2O43364 376 aa11.31□□□□□ -0.6
LIG1-209ENST00000596104 SRGAP2BP0DMP2 458 aa11.31□□□□□ -0.6
LIG1-209ENST00000596104 PPM1AP35813 382 aa11.31□□□□□ -0.6
LIG1-209ENST00000596104 PBX3P40426 434 aa11.31□□□□□ -0.6
LIG1-209ENST00000596104 DHX32Q7L7V1 743 aaKnown RBP11.31□□□□□ -0.6
LIG1-209ENST00000596104 ECHDC2Q86YB7 292 aa11.31□□□□□ -0.6
LIG1-209ENST00000596104 CKAP2LQ8IYA6 745 aa11.31□□□□□ -0.6
LIG1-209ENST00000596104 LRRC43Q8N309 656 aa11.31□□□□□ -0.6
LIG1-209ENST00000596104 METTL13Q8N6R0 699 aa11.31□□□□□ -0.6
LIG1-209ENST00000596104 ZNF558Q96NG5 402 aa11.31□□□□□ -0.6
LIG1-209ENST00000596104 ZNF577Q9BSK1 485 aa11.31□□□□□ -0.6
LIG1-209ENST00000596104 APOL5Q9BWW9 433 aa11.31□□□□□ -0.6
LIG1-209ENST00000596104 ENTPD7Q9NQZ7 604 aa11.31□□□□□ -0.6
LIG1-209ENST00000596104 TBC1D22BQ9NU19 505 aa11.31□□□□□ -0.6
LIG1-209ENST00000596104 FAM86C1Q9NVL1 165 aa11.31□□□□□ -0.6
LIG1-209ENST00000596104 CDH22Q9UJ99 828 aa11.31□□□□□ -0.6
LIG1-209ENST00000596104 PLXNA4Q9HCM2 1894 aa11.31□□□□□ -0.6
LIG1-209ENST00000596104 GOLGA8AA7E2F4 631 aa11.3□□□□□ -0.6
LIG1-209ENST00000596104 GOLGA8BA8MQT2 603 aa11.3□□□□□ -0.6
LIG1-209ENST00000596104 MAGEB2O15479 319 aa11.3□□□□□ -0.6
LIG1-209ENST00000596104 ST18O60284 1047 aa11.3□□□□□ -0.6
LIG1-209ENST00000596104 ZNF862O60290 1169 aa11.3□□□□□ -0.6
LIG1-209ENST00000596104 PDGFBP01127 241 aaPredicted RBP11.3□□□□□ -0.6
LIG1-209ENST00000596104 EIF4BP23588 611 aaKnown RBP11.3□□□□□ -0.6
LIG1-209ENST00000596104 CIITAP33076 1130 aa11.3□□□□□ -0.6
LIG1-209ENST00000596104 RCAN1P53805 252 aa11.3□□□□□ -0.6
LIG1-209ENST00000596104 NLRP11P59045 1033 aaKnown RBP11.3□□□□□ -0.6
LIG1-209ENST00000596104 SETQ01105 290 aaPredicted RBP11.3□□□□□ -0.6
LIG1-209ENST00000596104 PFKFB3Q16875 520 aaPredicted RBP11.3□□□□□ -0.6
LIG1-209ENST00000596104 ADCK5Q3MIX3 580 aa11.3□□□□□ -0.6
LIG1-209ENST00000596104 TSGA10IPQ3SY00 556 aa11.3□□□□□ -0.6
LIG1-209ENST00000596104 CLLU1OSQ5K130 101 aa11.3□□□□□ -0.6
LIG1-209ENST00000596104 RNF20Q5VTR2 975 aa11.3□□□□□ -0.6
LIG1-209ENST00000596104 LLGL2Q6P1M3 1020 aa11.3□□□□□ -0.6
LIG1-209ENST00000596104 TRMT1LQ7Z2T5 733 aaKnown RBP11.3□□□□□ -0.6
LIG1-209ENST00000596104 TMC7Q7Z402 723 aa11.3□□□□□ -0.6
LIG1-209ENST00000596104 ZNF598Q86UK7 904 aaKnown RBP11.3□□□□□ -0.6
LIG1-209ENST00000596104 SMAP1Q8IYB5 467 aaPredicted RBP11.3□□□□□ -0.6
LIG1-209ENST00000596104 RASEFQ8IZ41 740 aa11.3□□□□□ -0.6
LIG1-209ENST00000596104 SLC39A11Q8N1S5 342 aa11.3□□□□□ -0.6
LIG1-209ENST00000596104 LRRC71Q8N4P6 559 aa11.3□□□□□ -0.6
LIG1-209ENST00000596104 MRPL43Q8N983 215 aaKnown RBP11.3□□□□□ -0.6
LIG1-209ENST00000596104 LENG9Q96B70 501 aa11.3□□□□□ -0.6
LIG1-209ENST00000596104 ZMYND12Q9H0C1 365 aa11.3□□□□□ -0.6
Retrieved 100 of 20,778 RNA–protein pairs in 48.6 ms