RNA–Protein interactions for RNA: ENST00000593099.5

LIG3-216, Transcript of DNA ligase 3, humanhuman

TSL 2

Gene LIG3, Length 4,664 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIG3-216ENST00000593099 BEST2Q8NFU1 509 aa10.69□□□□□ -0.7
LIG3-216ENST00000593099 TMEM143Q96AN5 459 aa10.69□□□□□ -0.7
LIG3-216ENST00000593099 TMEM60Q9H2L4 133 aa10.69□□□□□ -0.7
LIG3-216ENST00000593099 LZTFL1Q9NQ48 299 aa10.69□□□□□ -0.7
LIG3-216ENST00000593099 GDAQ9Y2T3 454 aa10.69□□□□□ -0.7
LIG3-216ENST00000593099 SMIM22K7EJ46 135 aa10.69□□□□□ -0.7
LIG3-216ENST00000593099 OATP04181 439 aa10.69□□□□□ -0.7
LIG3-216ENST00000593099 PRKCBP05771 671 aa10.69□□□□□ -0.7
LIG3-216ENST00000593099 YBX3P16989 372 aaKnown RBP eCLIP10.69□□□□□ -0.7
LIG3-216ENST00000593099 FXR2P51116 673 aaKnown RBP eCLIP10.69□□□□□ -0.74e-6■■■■□ 19.6
LIG3-216ENST00000593099 EMC2Q15006 297 aa10.69□□□□□ -0.7
LIG3-216ENST00000593099 NTRK3Q16288 839 aa10.69□□□□□ -0.7
LIG3-216ENST00000593099 CCDC97Q96F63 343 aaPredicted RBP10.69□□□□□ -0.7
LIG3-216ENST00000593099 SH2D3AQ9BRG2 576 aa10.69□□□□□ -0.7
LIG3-216ENST00000593099 PIN4Q9Y237 131 aaKnown RBP10.69□□□□□ -0.7
LIG3-216ENST00000593099 GLI3P10071 1580 aa10.69□□□□□ -0.7
LIG3-216ENST00000593099 C17orf102A2RUQ5 167 aa10.69□□□□□ -0.7
LIG3-216ENST00000593099 MCM3P25205 808 aa10.69□□□□□ -0.7
LIG3-216ENST00000593099 ALDH5A1P51649 535 aaPredicted RBP10.69□□□□□ -0.7
LIG3-216ENST00000593099 ARPP19P56211 112 aa10.69□□□□□ -0.7
LIG3-216ENST00000593099 BFSP1Q12934 665 aa10.69□□□□□ -0.7
LIG3-216ENST00000593099 HLTFQ14527 1009 aaKnown RBP eCLIP10.69□□□□□ -0.7
LIG3-216ENST00000593099 METTL7BQ6UX53 244 aa10.69□□□□□ -0.7
LIG3-216ENST00000593099 SLTMQ9NWH9 1034 aaKnown RBP eCLIP10.69□□□□□ -0.7
LIG3-216ENST00000593099 RPS6KA5O75582 802 aa10.69□□□□□ -0.7
LIG3-216ENST00000593099 TUBB4AP04350 444 aa10.69□□□□□ -0.7
LIG3-216ENST00000593099 IFRD2Q12894 506 aaPredicted RBP10.69□□□□□ -0.7
LIG3-216ENST00000593099 KNOP1Q1ED39 458 aaKnown RBP10.69□□□□□ -0.7
LIG3-216ENST00000593099 SHC4Q6S5L8 630 aa10.69□□□□□ -0.7
LIG3-216ENST00000593099 SLC30A10Q6XR72 485 aa10.69□□□□□ -0.7
LIG3-216ENST00000593099 RASGRP2Q7LDG7 609 aa10.69□□□□□ -0.7
LIG3-216ENST00000593099 U2AF1L4Q8WU68 220 aaKnown RBP10.69□□□□□ -0.7
LIG3-216ENST00000593099 THAP9Q9H5L6 903 aa10.69□□□□□ -0.7
LIG3-216ENST00000593099 TYW1Q9NV66 732 aaKnown RBP10.69□□□□□ -0.7
LIG3-216ENST00000593099 STIM2Q9P246 746 aa10.69□□□□□ -0.7
LIG3-216ENST00000593099 SPDYE16A6NNV3 312 aaPredicted RBP10.68□□□□□ -0.7
LIG3-216ENST00000593099 ADCY3O60266 1144 aa10.68□□□□□ -0.7
LIG3-216ENST00000593099 CSPG5O95196 566 aa10.68□□□□□ -0.7
LIG3-216ENST00000593099 NR3C1P04150 777 aa10.68□□□□□ -0.7
LIG3-216ENST00000593099 ARP10275 920 aa10.68□□□□□ -0.7
LIG3-216ENST00000593099 SLC26A2P50443 739 aa10.68□□□□□ -0.7
LIG3-216ENST00000593099 NAALADL2Q58DX5 795 aa10.68□□□□□ -0.7
LIG3-216ENST00000593099 ZNF667Q5HYK9 610 aa10.68□□□□□ -0.7
LIG3-216ENST00000593099 TYW1BQ6NUM6 668 aa10.68□□□□□ -0.7
LIG3-216ENST00000593099 POLR3CQ9BUI4 534 aaPredicted RBP10.68□□□□□ -0.7
LIG3-216ENST00000593099 DNAI1Q9UI46 699 aa10.68□□□□□ -0.7
LIG3-216ENST00000593099 CTAGE9A4FU28 777 aa10.68□□□□□ -0.7
LIG3-216ENST00000593099 GAS2O43903 313 aaKnown RBP10.68□□□□□ -0.7
LIG3-216ENST00000593099 KIAA0754O94854 1291 aa10.68□□□□□ -0.7
LIG3-216ENST00000593099 CNTN2Q02246 1040 aa10.68□□□□□ -0.7
LIG3-216ENST00000593099 PGM5Q15124 567 aa10.68□□□□□ -0.7
LIG3-216ENST00000593099 EFCAB12Q6NXP0 572 aa10.68□□□□□ -0.7
LIG3-216ENST00000593099 FMR1NBQ8N0W7 255 aaPredicted RBP10.68□□□□□ -0.7
LIG3-216ENST00000593099 AFG1LQ8WV93 481 aa10.68□□□□□ -0.7
LIG3-216ENST00000593099 JAKMIP2Q96AA8 810 aa10.68□□□□□ -0.7
LIG3-216ENST00000593099 FAM213AQ9BRX8 229 aa10.68□□□□□ -0.7
LIG3-216ENST00000593099 RNF208Q9H0X6 261 aa10.68□□□□□ -0.7
LIG3-216ENST00000593099 STARD7Q9NQZ5 370 aa10.68□□□□□ -0.7
LIG3-216ENST00000593099 ATP8B3O60423 1300 aa10.68□□□□□ -0.7
LIG3-216ENST00000593099 UQCRHLA0A096LP55 91 aa10.68□□□□□ -0.7
LIG3-216ENST00000593099 A0A1W2PRG0 241 aa10.68□□□□□ -0.7
LIG3-216ENST00000593099 UQCRHP07919 91 aa10.68□□□□□ -0.7
LIG3-216ENST00000593099 SUPT20HL2P0C7V6 817 aa10.68□□□□□ -0.7
LIG3-216ENST00000593099 GBP2P32456 591 aaPredicted RBP10.68□□□□□ -0.7
LIG3-216ENST00000593099 CBX1P83916 185 aa10.68□□□□□ -0.7
LIG3-216ENST00000593099 ZNF484Q5JVG2 852 aa10.68□□□□□ -0.7
LIG3-216ENST00000593099 PLA2G4FQ68DD2 849 aa10.68□□□□□ -0.7
LIG3-216ENST00000593099 DDX55Q8NHQ9 600 aaKnown RBP eCLIP10.68□□□□□ -0.7
LIG3-216ENST00000593099 PGBD4Q96DM1 585 aa10.68□□□□□ -0.7
LIG3-216ENST00000593099 MTUS1Q9ULD2 1270 aa10.68□□□□□ -0.7
LIG3-216ENST00000593099 SCN11AQ9UI33 1791 aa10.68□□□□□ -0.7
LIG3-216ENST00000593099 CRYBG1Q9Y4K1 1723 aa10.68□□□□□ -0.7
LIG3-216ENST00000593099 RPLP2P05387 115 aaKnown RBP10.67□□□□□ -0.7
LIG3-216ENST00000593099 CASP1P29466 404 aa10.67□□□□□ -0.7
LIG3-216ENST00000593099 SH3BGRP55822 239 aaPredicted RBP10.67□□□□□ -0.7
LIG3-216ENST00000593099 SEL1L2Q5TEA6 688 aa10.67□□□□□ -0.7
LIG3-216ENST00000593099 GUF1Q8N442 669 aaKnown RBP10.67□□□□□ -0.7
LIG3-216ENST00000593099 PIK3R5Q8WYR1 880 aa10.67□□□□□ -0.7
LIG3-216ENST00000593099 BTBD19C9JJ37 291 aa10.67□□□□□ -0.7
LIG3-216ENST00000593099 ACVR2BQ13705 512 aa10.67□□□□□ -0.7
LIG3-216ENST00000593099 IQSEC1Q6DN90 963 aa10.67□□□□□ -0.7
LIG3-216ENST00000593099 SHCBP1Q8NEM2 672 aa10.67□□□□□ -0.7
LIG3-216ENST00000593099 CENPHQ9H3R5 247 aa10.67□□□□□ -0.7
LIG3-216ENST00000593099 UNC45AQ9H3U1 944 aa10.67□□□□□ -0.7
LIG3-216ENST00000593099 MYO1AQ9UBC5 1043 aa10.67□□□□□ -0.7
LIG3-216ENST00000593099 KIAA0391O15091 583 aaKnown RBP10.67□□□□□ -0.7
LIG3-216ENST00000593099 MSCO60682 206 aa10.67□□□□□ -0.7
LIG3-216ENST00000593099 FERP16591 822 aa10.67□□□□□ -0.7
LIG3-216ENST00000593099 PPM1FP49593 454 aaPredicted RBP10.67□□□□□ -0.7
LIG3-216ENST00000593099 MAP2K5Q13163 448 aa10.67□□□□□ -0.7
LIG3-216ENST00000593099 PKN1Q16512 942 aa10.67□□□□□ -0.7
LIG3-216ENST00000593099 FAM110CQ1W6H9 321 aa10.67□□□□□ -0.7
LIG3-216ENST00000593099 MAP9Q49MG5 647 aa10.67□□□□□ -0.7
LIG3-216ENST00000593099 MUM1L1Q5H9M0 696 aa10.67□□□□□ -0.7
LIG3-216ENST00000593099 ZNF569Q5MCW4 686 aa10.67□□□□□ -0.7
LIG3-216ENST00000593099 GSTA5Q7RTV2 222 aa10.67□□□□□ -0.7
LIG3-216ENST00000593099 TINF2Q9BSI4 451 aa10.67□□□□□ -0.7
LIG3-216ENST00000593099 XPNPEP3Q9NQH7 507 aa10.67□□□□□ -0.7
LIG3-216ENST00000593099 USTQ9Y2C2 406 aa10.67□□□□□ -0.7
LIG3-216ENST00000593099 ARHGAP6O43182 974 aa10.67□□□□□ -0.7
Retrieved 100 of 20,778 RNA–protein pairs in 37 ms