RNA–Protein interactions for RNA: ENST00000592138.5

TPM4-215, Transcript of tropomyosin 4, human

TSL 2

Gene TPM4, Length 635 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
TPM4-215	ENST00000592138	STK38	Q15208	465 aa		10.85	□□□□□ -0.67
TPM4-215	ENST00000592138	ZNF618	Q5T7W0	954 aa		10.85	□□□□□ -0.67
TPM4-215	ENST00000592138	PLA2G4F	Q68DD2	849 aa		10.85	□□□□□ -0.67
TPM4-215	ENST00000592138	PSRC1	Q6PGN9	363 aa	Predicted RBP	10.85	□□□□□ -0.67
TPM4-215	ENST00000592138	POTEG	Q6S5H5	508 aa		10.85	□□□□□ -0.67
TPM4-215	ENST00000592138	CABP7	Q86V35	215 aa		10.85	□□□□□ -0.67
TPM4-215	ENST00000592138	RPUSD2	Q8IZ73	545 aa	Known RBP	10.85	□□□□□ -0.67
TPM4-215	ENST00000592138	KIAA0319L	Q8IZA0	1049 aa		10.85	□□□□□ -0.67
TPM4-215	ENST00000592138	ZNF579	Q8NAF0	562 aa	Known RBP	10.85	□□□□□ -0.67
TPM4-215	ENST00000592138	USP38	Q8NB14	1042 aa		10.85	□□□□□ -0.67
TPM4-215	ENST00000592138	DNAJB3	Q8WWF6	145 aa		10.85	□□□□□ -0.67
TPM4-215	ENST00000592138	CCSER1	Q9C0I3	900 aa		10.85	□□□□□ -0.67
TPM4-215	ENST00000592138	IL23A	Q9NPF7	189 aa		10.85	□□□□□ -0.67
TPM4-215	ENST00000592138	TMEM150B	A6NC51	233 aa		10.84	□□□□□ -0.67
TPM4-215	ENST00000592138	PP2D1	A8MPX8	630 aa		10.84	□□□□□ -0.67
TPM4-215	ENST00000592138		M0QZ92	97 aa		10.84	□□□□□ -0.67
TPM4-215	ENST00000592138	SOX1	O00570	391 aa	Predicted RBP	10.84	□□□□□ -0.67
TPM4-215	ENST00000592138	CSF2RA	P15509	400 aa		10.84	□□□□□ -0.67
TPM4-215	ENST00000592138	MARCKS	P29966	332 aa	Predicted RBP	10.84	□□□□□ -0.67
TPM4-215	ENST00000592138	UBA7	P41226	1012 aa		10.84	□□□□□ -0.67
TPM4-215	ENST00000592138	POLG	P54098	1239 aa	Predicted RBP	10.84	□□□□□ -0.67
TPM4-215	ENST00000592138	CCL23	P55773	120 aa		10.84	□□□□□ -0.67
TPM4-215	ENST00000592138	NPEPPS	P55786	919 aa		10.84	□□□□□ -0.67
TPM4-215	ENST00000592138	MRPS6	P82932	125 aa	Known RBP	10.84	□□□□□ -0.67
TPM4-215	ENST00000592138	MDM2	Q00987	491 aa	Predicted RBP	10.84	□□□□□ -0.67
TPM4-215	ENST00000592138	CEBPZ	Q03701	1054 aa	Known RBP	10.84	□□□□□ -0.67
TPM4-215	ENST00000592138	DNM1	Q05193	864 aa	Known RBP	10.84	□□□□□ -0.67
TPM4-215	ENST00000592138	GRIN1	Q05586	938 aa		10.84	□□□□□ -0.67
TPM4-215	ENST00000592138	ECM1	Q16610	540 aa		10.84	□□□□□ -0.67
TPM4-215	ENST00000592138	TMEM119	Q4V9L6	283 aa		10.84	□□□□□ -0.67
TPM4-215	ENST00000592138	XKR9	Q5GH70	373 aa		10.84	□□□□□ -0.67
TPM4-215	ENST00000592138	FOXD4L5	Q5VV16	416 aa	Predicted RBP	10.84	□□□□□ -0.67
TPM4-215	ENST00000592138	EFCAB12	Q6NXP0	572 aa		10.84	□□□□□ -0.67
TPM4-215	ENST00000592138	TRMT1L	Q7Z2T5	733 aa	Known RBP	10.84	□□□□□ -0.67
TPM4-215	ENST00000592138	METTL13	Q8N6R0	699 aa		10.84	□□□□□ -0.67
TPM4-215	ENST00000592138	PIGO	Q8TEQ8	1089 aa		10.84	□□□□□ -0.67
TPM4-215	ENST00000592138	TCP11	Q8WWU5	503 aa		10.84	□□□□□ -0.67
TPM4-215	ENST00000592138	FOXD4L4	Q8WXT5	416 aa	Predicted RBP	10.84	□□□□□ -0.67
TPM4-215	ENST00000592138	CALML4	Q96GE6	196 aa		10.84	□□□□□ -0.67
TPM4-215	ENST00000592138	CCDC43	Q96MW1	224 aa	Known RBP	10.84	□□□□□ -0.67
TPM4-215	ENST00000592138	MAP7D2	Q96T17	732 aa		10.84	□□□□□ -0.67
TPM4-215	ENST00000592138	SCAND2P	Q9GZW5	306 aa	Predicted RBP	10.84	□□□□□ -0.67
TPM4-215	ENST00000592138	CSRNP2	Q9H175	543 aa		10.84	□□□□□ -0.67
TPM4-215	ENST00000592138	DDX19A	Q9NUU7	478 aa	Known RBP	10.84	□□□□□ -0.67
TPM4-215	ENST00000592138	RCOR1	Q9UKL0	485 aa		10.84	□□□□□ -0.67
TPM4-215	ENST00000592138	KIAA1024	Q9UPX6	916 aa		10.84	□□□□□ -0.67
TPM4-215	ENST00000592138	DNM3	Q9UQ16	869 aa		10.84	□□□□□ -0.67
TPM4-215	ENST00000592138	TRPV2	Q9Y5S1	764 aa		10.84	□□□□□ -0.67
TPM4-215	ENST00000592138	TANC1	Q9C0D5	1861 aa		10.84	□□□□□ -0.67
TPM4-215	ENST00000592138	ZBTB39	O15060	712 aa		10.83	□□□□□ -0.68
TPM4-215	ENST00000592138	CUTA	O60888	179 aa		10.83	□□□□□ -0.68
TPM4-215	ENST00000592138	NBN	O60934	754 aa		10.83	□□□□□ -0.68
TPM4-215	ENST00000592138	EYA4	O95677	639 aa		10.83	□□□□□ -0.68
TPM4-215	ENST00000592138	CHRNA1	P02708	482 aa		10.83	□□□□□ -0.68
TPM4-215	ENST00000592138	CDC25A	P30304	524 aa		10.83	□□□□□ -0.68
TPM4-215	ENST00000592138	TXLNA	P40222	546 aa		10.83	□□□□□ -0.68
TPM4-215	ENST00000592138	GRB10	Q13322	594 aa		10.83	□□□□□ -0.68
TPM4-215	ENST00000592138	MBTPS1	Q14703	1052 aa		10.83	□□□□□ -0.68
TPM4-215	ENST00000592138	GPNMB	Q14956	572 aa		10.83	□□□□□ -0.68
TPM4-215	ENST00000592138	EMC2	Q15006	297 aa		10.83	□□□□□ -0.68
TPM4-215	ENST00000592138	ZNF410	Q86VK4	478 aa		10.83	□□□□□ -0.68
TPM4-215	ENST00000592138	MCPH1	Q8NEM0	835 aa		10.83	□□□□□ -0.68
TPM4-215	ENST00000592138	APBB2	Q92870	758 aa		10.83	□□□□□ -0.68
TPM4-215	ENST00000592138	VWCE	Q96DN2	955 aa		10.83	□□□□□ -0.68
TPM4-215	ENST00000592138	ZBTB10	Q96DT7	871 aa		10.83	□□□□□ -0.68
TPM4-215	ENST00000592138	SCLY	Q96I15	445 aa		10.83	□□□□□ -0.68
TPM4-215	ENST00000592138	CDK5RAP3	Q96JB5	506 aa		10.83	□□□□□ -0.68
TPM4-215	ENST00000592138	PNMA5	Q96PV4	448 aa		10.83	□□□□□ -0.68
TPM4-215	ENST00000592138	MTR	Q99707	1265 aa		10.83	□□□□□ -0.68
TPM4-215	ENST00000592138	TIPIN	Q9BVW5	301 aa		10.83	□□□□□ -0.68
TPM4-215	ENST00000592138	CELF4	Q9BZC1	486 aa	Known RBP	10.83	□□□□□ -0.68
TPM4-215	ENST00000592138	FAM49A	Q9H0Q0	323 aa	Predicted RBP	10.83	□□□□□ -0.68
TPM4-215	ENST00000592138	ATP6V0A4	Q9HBG4	840 aa		10.83	□□□□□ -0.68
TPM4-215	ENST00000592138	TSHZ2	Q9NRE2	1034 aa		10.83	□□□□□ -0.68
TPM4-215	ENST00000592138	KCND2	Q9NZV8	630 aa		10.83	□□□□□ -0.68
TPM4-215	ENST00000592138	TFIP11	Q9UBB9	837 aa	Known RBP	10.83	□□□□□ -0.68
TPM4-215	ENST00000592138	RBM19	Q9Y4C8	960 aa	Known RBP	10.83	□□□□□ -0.68
TPM4-215	ENST00000592138	MYH15	Q9Y2K3	1946 aa		10.82	□□□□□ -0.68
TPM4-215	ENST00000592138	ARHGEF35	A5YM69	484 aa		10.82	□□□□□ -0.68
TPM4-215	ENST00000592138	ASAP2	O43150	1006 aa		10.82	□□□□□ -0.68
TPM4-215	ENST00000592138	EFCAB14	O75071	495 aa		10.82	□□□□□ -0.68
TPM4-215	ENST00000592138	GPR32	O75388	356 aa		10.82	□□□□□ -0.68
TPM4-215	ENST00000592138	BAIAP3	O94812	1187 aa		10.82	□□□□□ -0.68
TPM4-215	ENST00000592138	CTSH	P09668	335 aa		10.82	□□□□□ -0.68
TPM4-215	ENST00000592138	CYP11B2	P19099	503 aa		10.82	□□□□□ -0.68
TPM4-215	ENST00000592138	GPC3	P51654	580 aa		10.82	□□□□□ -0.68
TPM4-215	ENST00000592138	CLCN3	P51790	818 aa		10.82	□□□□□ -0.68
TPM4-215	ENST00000592138	CRYBB1	P53674	252 aa	Predicted RBP	10.82	□□□□□ -0.68
TPM4-215	ENST00000592138	POU5F1B	Q06416	359 aa		10.82	□□□□□ -0.68
TPM4-215	ENST00000592138	MKRN4P	Q13434	485 aa	Predicted RBP	10.82	□□□□□ -0.68
TPM4-215	ENST00000592138	MXD4	Q14582	209 aa	Predicted RBP	10.82	□□□□□ -0.68
TPM4-215	ENST00000592138	PLEKHG4	Q58EX7	1191 aa		10.82	□□□□□ -0.68
TPM4-215	ENST00000592138	FBXO47	Q5MNV8	452 aa		10.82	□□□□□ -0.68
TPM4-215	ENST00000592138	ODR4	Q5SWX8	454 aa		10.82	□□□□□ -0.68
TPM4-215	ENST00000592138	AXDND1	Q5T1B0	1012 aa	Predicted RBP	10.82	□□□□□ -0.68
TPM4-215	ENST00000592138	CNKSR3	Q6P9H4	555 aa		10.82	□□□□□ -0.68
TPM4-215	ENST00000592138	TSHZ1	Q6ZSZ6	1077 aa		10.82	□□□□□ -0.68
TPM4-215	ENST00000592138	LRRC71	Q8N4P6	559 aa		10.82	□□□□□ -0.68
TPM4-215	ENST00000592138	SYT2	Q8N9I0	419 aa	Predicted RBP	10.82	□□□□□ -0.68
TPM4-215	ENST00000592138	SP7	Q8TDD2	431 aa	Predicted RBP	10.82	□□□□□ -0.68

Retrieved 100 of 20,778 RNA–protein pairs in 31.7 ms