RNA–Protein interactions for RNA: ENST00000591475.5

VPS4B-206, Transcript of vacuolar protein sorting 4 homolog B, humanhuman

TSL 1 (best)

Gene VPS4B, Length 2,008 nt, Biotype retained intron, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS4B-206ENST00000591475 NPHP3-ACAD11A0A0J9YXS1 232 aa11.82□□□□□ -0.52
VPS4B-206ENST00000591475 TCP10L2B9ZVM9 353 aa11.82□□□□□ -0.52
VPS4B-206ENST00000591475 E7EVH7 732 aa11.82□□□□□ -0.52
VPS4B-206ENST00000591475 CCDC188H7C350 402 aa11.82□□□□□ -0.52
VPS4B-206ENST00000591475 ANXA13P27216 316 aa11.82□□□□□ -0.52
VPS4B-206ENST00000591475 ECHS1P30084 290 aa11.82□□□□□ -0.52
VPS4B-206ENST00000591475 MNAT1P51948 309 aa11.82□□□□□ -0.52
VPS4B-206ENST00000591475 SEC24CP53992 1094 aa11.82□□□□□ -0.52
VPS4B-206ENST00000591475 GABPAQ06546 454 aa11.82□□□□□ -0.52
VPS4B-206ENST00000591475 BIRC3Q13489 604 aa11.82□□□□□ -0.52
VPS4B-206ENST00000591475 MTMR3Q13615 1198 aa11.82□□□□□ -0.52
VPS4B-206ENST00000591475 RBM26Q5T8P6 1007 aaKnown RBP11.82□□□□□ -0.52
VPS4B-206ENST00000591475 SAMD7Q7Z3H4 446 aa11.82□□□□□ -0.52
VPS4B-206ENST00000591475 ZNF571Q7Z3V5 609 aaPredicted RBP11.82□□□□□ -0.52
VPS4B-206ENST00000591475 FRMD5Q7Z6J6 570 aa11.82□□□□□ -0.52
VPS4B-206ENST00000591475 FAM83AQ86UY5 434 aa11.82□□□□□ -0.52
VPS4B-206ENST00000591475 LRRC57Q8N9N7 239 aa11.82□□□□□ -0.52
VPS4B-206ENST00000591475 LMBR1Q8WVP7 490 aa11.82□□□□□ -0.52
VPS4B-206ENST00000591475 CABS1Q96KC9 395 aa11.82□□□□□ -0.52
VPS4B-206ENST00000591475 CENPHQ9H3R5 247 aa11.82□□□□□ -0.52
VPS4B-206ENST00000591475 VEZTQ9HBM0 779 aa11.82□□□□□ -0.52
VPS4B-206ENST00000591475 PITPNM2Q9BZ72 1349 aa11.82□□□□□ -0.52
VPS4B-206ENST00000591475 DDTLA6NHG4 134 aaPredicted RBP11.82□□□□□ -0.52
VPS4B-206ENST00000591475 BHMG1C9JSJ3 638 aaPredicted RBP11.82□□□□□ -0.52
VPS4B-206ENST00000591475 DDNO94850 711 aaPredicted RBP11.82□□□□□ -0.52
VPS4B-206ENST00000591475 AFPP02771 609 aaKnown RBP11.82□□□□□ -0.52
VPS4B-206ENST00000591475 CYP11B2P19099 503 aa11.82□□□□□ -0.52
VPS4B-206ENST00000591475 NR2F2P24468 414 aa11.82□□□□□ -0.52
VPS4B-206ENST00000591475 HPDP32754 393 aaPredicted RBP11.82□□□□□ -0.52
VPS4B-206ENST00000591475 CTNNA1P35221 906 aaKnown RBP11.82□□□□□ -0.52
VPS4B-206ENST00000591475 TNFAIP1Q13829 316 aa11.82□□□□□ -0.52
VPS4B-206ENST00000591475 TBC1D10BQ4KMP7 808 aaPredicted RBP11.82□□□□□ -0.52
VPS4B-206ENST00000591475 RNF187Q5TA31 235 aaPredicted RBP11.82□□□□□ -0.52
VPS4B-206ENST00000591475 CCDC91Q7Z6B0 441 aa11.82□□□□□ -0.52
VPS4B-206ENST00000591475 ADGRF4Q8IZF3 695 aa11.82□□□□□ -0.52
VPS4B-206ENST00000591475 C3orf20Q8ND61 904 aa11.82□□□□□ -0.52
VPS4B-206ENST00000591475 GJA10Q969M2 543 aa11.82□□□□□ -0.52
VPS4B-206ENST00000591475 BUD13Q9BRD0 619 aaKnown RBP eCLIP11.82□□□□□ -0.529e-7■□□□□ 10.7
VPS4B-206ENST00000591475 ARMCX3Q9UH62 379 aaPredicted RBP11.82□□□□□ -0.52
VPS4B-206ENST00000591475 NAGPAQ9UK23 515 aa11.82□□□□□ -0.52
VPS4B-206ENST00000591475 NOC2LQ9Y3T9 749 aaKnown RBP11.82□□□□□ -0.52
VPS4B-206ENST00000591475 POTEB3A0JP26 581 aa11.81□□□□□ -0.52
VPS4B-206ENST00000591475 FRMD3A2A2Y4 597 aa11.81□□□□□ -0.52
VPS4B-206ENST00000591475 POTECB2RU33 542 aa11.81□□□□□ -0.52
VPS4B-206ENST00000591475 H0YGN5 161 aa11.81□□□□□ -0.52
VPS4B-206ENST00000591475 PPP1R11O60927 126 aaPredicted RBP11.81□□□□□ -0.52
VPS4B-206ENST00000591475 FLOT1O75955 427 aa11.81□□□□□ -0.52
VPS4B-206ENST00000591475 EGFRP00533 1210 aa11.81□□□□□ -0.52
VPS4B-206ENST00000591475 ACTN1P12814 892 aa11.81□□□□□ -0.52
VPS4B-206ENST00000591475 UCHL3P15374 230 aa11.81□□□□□ -0.52
VPS4B-206ENST00000591475 SLC9A1P19634 815 aa11.81□□□□□ -0.52
VPS4B-206ENST00000591475 PRKCIP41743 596 aa11.81□□□□□ -0.52
VPS4B-206ENST00000591475 CACNB1Q02641 598 aaPredicted RBP11.81□□□□□ -0.52
VPS4B-206ENST00000591475 ZNF543Q08ER8 600 aa11.81□□□□□ -0.52
VPS4B-206ENST00000591475 DRP2Q13474 957 aa11.81□□□□□ -0.52
VPS4B-206ENST00000591475 UAP1Q16222 522 aaPredicted RBP11.81□□□□□ -0.52
VPS4B-206ENST00000591475 AGBL2Q5U5Z8 902 aa11.81□□□□□ -0.52
VPS4B-206ENST00000591475 ALKBH5Q6P6C2 394 aaKnown RBP11.81□□□□□ -0.52
VPS4B-206ENST00000591475 POTEBQ6S5H4 581 aa11.81□□□□□ -0.52
VPS4B-206ENST00000591475 SH3BP5LQ7L8J4 393 aa11.81□□□□□ -0.52
VPS4B-206ENST00000591475 VPS36Q86VN1 386 aa11.81□□□□□ -0.52
VPS4B-206ENST00000591475 TPCN2Q8NHX9 752 aa11.81□□□□□ -0.52
VPS4B-206ENST00000591475 CSRNP1Q96S65 589 aa11.81□□□□□ -0.52
VPS4B-206ENST00000591475 ZHX3Q9H4I2 956 aa11.81□□□□□ -0.52
VPS4B-206ENST00000591475 PSTPIP2Q9H939 334 aa11.81□□□□□ -0.52
VPS4B-206ENST00000591475 NFS1Q9Y697 457 aa11.81□□□□□ -0.52
VPS4B-206ENST00000591475 IGKV6D-41A0A0C4DH26 115 aa11.81□□□□□ -0.52
VPS4B-206ENST00000591475 TMCO5BA8MYB1 307 aa11.81□□□□□ -0.52
VPS4B-206ENST00000591475 KRIT1O00522 736 aa11.81□□□□□ -0.52
VPS4B-206ENST00000591475 SART1O43290 800 aaKnown RBP11.81□□□□□ -0.52
VPS4B-206ENST00000591475 TTLL1O95922 423 aa11.81□□□□□ -0.52
VPS4B-206ENST00000591475 ZNF844Q08AG5 666 aa11.81□□□□□ -0.52
VPS4B-206ENST00000591475 PLCB4Q15147 1175 aa11.81□□□□□ -0.52
VPS4B-206ENST00000591475 EXOC3L4Q17RC7 722 aa11.81□□□□□ -0.52
VPS4B-206ENST00000591475 DPY19L2P1Q6NXN4 242 aa11.81□□□□□ -0.52
VPS4B-206ENST00000591475 PEX26Q7Z412 305 aa11.81□□□□□ -0.52
VPS4B-206ENST00000591475 SYCE1Q8N0S2 351 aa11.81□□□□□ -0.52
VPS4B-206ENST00000591475 METTL13Q8N6R0 699 aa11.81□□□□□ -0.52
VPS4B-206ENST00000591475 AP1M1Q9BXS5 423 aa11.81□□□□□ -0.52
VPS4B-206ENST00000591475 SLITRK6Q9H5Y7 841 aa11.81□□□□□ -0.52
VPS4B-206ENST00000591475 VCPKMTQ9H867 229 aa11.81□□□□□ -0.52
VPS4B-206ENST00000591475 PPANQ9NQ55 473 aaKnown RBP11.81□□□□□ -0.52
VPS4B-206ENST00000591475 TRAF3IP3Q9Y228 551 aa11.81□□□□□ -0.52
VPS4B-206ENST00000591475 CNTNAP1P78357 1384 aa11.8□□□□□ -0.52
VPS4B-206ENST00000591475 A0A0A6YYK5 440 aaPredicted RBP11.8□□□□□ -0.52
VPS4B-206ENST00000591475 GMNCA6NCL1 334 aa11.8□□□□□ -0.52
VPS4B-206ENST00000591475 MYO1FO00160 1098 aa11.8□□□□□ -0.52
VPS4B-206ENST00000591475 CALUO43852 315 aaPredicted RBP11.8□□□□□ -0.52
VPS4B-206ENST00000591475 H2AFZP0C0S5 128 aa11.8□□□□□ -0.52
VPS4B-206ENST00000591475 XRCC5P13010 732 aaKnown RBP11.8□□□□□ -0.52
VPS4B-206ENST00000591475 AKR1B1P15121 316 aa11.8□□□□□ -0.52
VPS4B-206ENST00000591475 PON1P27169 355 aa11.8□□□□□ -0.52
VPS4B-206ENST00000591475 SLC12A3P55017 1021 aa11.8□□□□□ -0.52
VPS4B-206ENST00000591475 ACTN3Q08043 901 aaPredicted RBP11.8□□□□□ -0.52
VPS4B-206ENST00000591475 IFT88Q13099 833 aa11.8□□□□□ -0.52
VPS4B-206ENST00000591475 H2AFVQ71UI9 128 aa11.8□□□□□ -0.52
VPS4B-206ENST00000591475 SLFN11Q7Z7L1 901 aa11.8□□□□□ -0.52
VPS4B-206ENST00000591475 DDX42Q86XP3 938 aaKnown RBP eCLIP11.8□□□□□ -0.52
VPS4B-206ENST00000591475 RASGEF1CQ8N431 466 aa11.8□□□□□ -0.52
VPS4B-206ENST00000591475 OR2W6PQ8NHA6 318 aa11.8□□□□□ -0.52
Retrieved 100 of 20,778 RNA–protein pairs in 30.1 ms