RNA–Protein interactions for RNA: ENST00000590559.2

CLIP3-204, Transcript of CAP-Gly domain containing linker protein 3, humanhuman

TSL 4

Gene CLIP3, Length 549 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLIP3-204ENST00000590559 NRIP1P48552 1158 aa13.32□□□□□ -0.28
CLIP3-204ENST00000590559 METAP2P50579 478 aaKnown RBP eCLIP13.32□□□□□ -0.28
CLIP3-204ENST00000590559 EVCP57679 992 aa13.32□□□□□ -0.28
CLIP3-204ENST00000590559 APOBRQ0VD83 1088 aa13.32□□□□□ -0.28
CLIP3-204ENST00000590559 KIZQ2M2Z5 673 aa13.32□□□□□ -0.28
CLIP3-204ENST00000590559 ODR4Q5SWX8 454 aa13.32□□□□□ -0.28
CLIP3-204ENST00000590559 Q6ZUG5 572 aa13.32□□□□□ -0.28
CLIP3-204ENST00000590559 HFE2Q6ZVN8 426 aa13.32□□□□□ -0.28
CLIP3-204ENST00000590559 CENPQQ7L2Z9 268 aaPredicted RBP13.32□□□□□ -0.28
CLIP3-204ENST00000590559 REXO1Q8N1G1 1221 aaKnown RBP13.32□□□□□ -0.28
CLIP3-204ENST00000590559 VN1R2Q8NFZ6 395 aa13.32□□□□□ -0.28
CLIP3-204ENST00000590559 PPP2R3CQ969Q6 453 aa13.32□□□□□ -0.28
CLIP3-204ENST00000590559 OSMRQ99650 979 aa13.32□□□□□ -0.28
CLIP3-204ENST00000590559 ADAMTS10Q9H324 1103 aa13.32□□□□□ -0.28
CLIP3-204ENST00000590559 TYW1Q9NV66 732 aaKnown RBP13.32□□□□□ -0.28
CLIP3-204ENST00000590559 RNF216Q9NWF9 866 aaPredicted RBP13.32□□□□□ -0.28
CLIP3-204ENST00000590559 TMEM161AQ9NX61 479 aa13.32□□□□□ -0.28
CLIP3-204ENST00000590559 HCSTQ9UBK5 93 aa13.32□□□□□ -0.28
CLIP3-204ENST00000590559 MUTYHQ9UIF7 546 aa13.32□□□□□ -0.28
CLIP3-204ENST00000590559 LRFN2Q9ULH4 789 aa13.32□□□□□ -0.28
CLIP3-204ENST00000590559 PCDHA10Q9Y5I2 948 aa13.32□□□□□ -0.28
CLIP3-204ENST00000590559 VPS13AQ96RL7 3174 aa13.32□□□□□ -0.28
CLIP3-204ENST00000590559 CCDC196A0A1B0GTZ2 297 aa13.31□□□□□ -0.28
CLIP3-204ENST00000590559 ZNF862O60290 1169 aa13.31□□□□□ -0.28
CLIP3-204ENST00000590559 FGF18O76093 207 aa13.31□□□□□ -0.28
CLIP3-204ENST00000590559 CSPG5O95196 566 aa13.31□□□□□ -0.28
CLIP3-204ENST00000590559 VTNP04004 478 aa13.31□□□□□ -0.28
CLIP3-204ENST00000590559 HSPA4P34932 840 aa13.31□□□□□ -0.28
CLIP3-204ENST00000590559 NDUFV1P49821 464 aa13.31□□□□□ -0.28
CLIP3-204ENST00000590559 ERVFC1P60507 584 aa13.31□□□□□ -0.28
CLIP3-204ENST00000590559 TMEM184AQ6ZMB5 413 aa13.31□□□□□ -0.28
CLIP3-204ENST00000590559 LRRC55Q6ZSA7 311 aa13.31□□□□□ -0.28
CLIP3-204ENST00000590559 COLGALT1Q8NBJ5 622 aa13.31□□□□□ -0.28
CLIP3-204ENST00000590559 SUSD6Q92537 303 aa13.31□□□□□ -0.28
CLIP3-204ENST00000590559 UIMC1Q96RL1 719 aa13.31□□□□□ -0.28
CLIP3-204ENST00000590559 C6orf50Q9HD87 102 aa13.31□□□□□ -0.28
CLIP3-204ENST00000590559 GINS2Q9Y248 185 aa13.31□□□□□ -0.28
CLIP3-204ENST00000590559 PCDHB12Q9Y5F1 795 aa13.31□□□□□ -0.28
CLIP3-204ENST00000590559 SNX14Q9Y5W7 946 aa13.31□□□□□ -0.28
CLIP3-204ENST00000590559 DENND3A2RUS2 1198 aa13.3□□□□□ -0.28
CLIP3-204ENST00000590559 TBKBP1A7MCY6 615 aa13.3□□□□□ -0.28
CLIP3-204ENST00000590559 PSAPP07602 524 aa13.3□□□□□ -0.28
CLIP3-204ENST00000590559 GNA11P29992 359 aa13.3□□□□□ -0.28
CLIP3-204ENST00000590559 PLCB3Q01970 1234 aa13.3□□□□□ -0.28
CLIP3-204ENST00000590559 DUSP6Q16828 381 aa13.3□□□□□ -0.28
CLIP3-204ENST00000590559 CSPP1Q1MSJ5 1256 aa13.3□□□□□ -0.28
CLIP3-204ENST00000590559 PDE12Q6L8Q7 609 aaKnown RBP13.3□□□□□ -0.28
CLIP3-204ENST00000590559 BMP8AQ7Z5Y6 402 aa13.3□□□□□ -0.28
CLIP3-204ENST00000590559 RBM23Q86U06 439 aaKnown RBP13.3□□□□□ -0.28
CLIP3-204ENST00000590559 RASGRP4Q8TDF6 673 aa13.3□□□□□ -0.28
CLIP3-204ENST00000590559 CCDC12Q8WUD4 166 aaPredicted RBP13.3□□□□□ -0.28
CLIP3-204ENST00000590559 EDAQ92838 391 aa13.3□□□□□ -0.28
CLIP3-204ENST00000590559 BRF1Q92994 677 aa13.3□□□□□ -0.28
CLIP3-204ENST00000590559 CASD1Q96PB1 797 aa13.3□□□□□ -0.28
CLIP3-204ENST00000590559 CEP89Q96ST8 783 aa13.3□□□□□ -0.28
CLIP3-204ENST00000590559 RNF26Q9BY78 433 aaPredicted RBP13.3□□□□□ -0.28
CLIP3-204ENST00000590559 TLR9Q9NR96 1032 aa13.3□□□□□ -0.28
CLIP3-204ENST00000590559 GABBR1Q9UBS5 961 aa13.3□□□□□ -0.28
CLIP3-204ENST00000590559 BARX2Q9UMQ3 279 aaPredicted RBP13.3□□□□□ -0.28
CLIP3-204ENST00000590559 CEP131Q9UPN4 1083 aa13.3□□□□□ -0.28
CLIP3-204ENST00000590559 LZTS1Q9Y250 596 aa13.3□□□□□ -0.28
CLIP3-204ENST00000590559 CFAP54Q96N23 3096 aa13.3□□□□□ -0.28
CLIP3-204ENST00000590559 MSH4O15457 936 aa13.29□□□□□ -0.28
CLIP3-204ENST00000590559 MAGEB2O15479 319 aa13.29□□□□□ -0.28
CLIP3-204ENST00000590559 PPFIA3O75145 1194 aa13.29□□□□□ -0.28
CLIP3-204ENST00000590559 FGFR1P11362 822 aa13.29□□□□□ -0.28
CLIP3-204ENST00000590559 IFNAR1P17181 557 aa13.29□□□□□ -0.28
CLIP3-204ENST00000590559 ATF7P17544 494 aaPredicted RBP13.29□□□□□ -0.28
CLIP3-204ENST00000590559 RPS6KB1P23443 525 aa13.29□□□□□ -0.28
CLIP3-204ENST00000590559 CLCN3P51790 818 aa13.29□□□□□ -0.28
CLIP3-204ENST00000590559 NLRP11P59045 1033 aaKnown RBP13.29□□□□□ -0.28
CLIP3-204ENST00000590559 RBM10P98175 930 aaKnown RBP13.29□□□□□ -0.28
CLIP3-204ENST00000590559 TARBP2Q15633 366 aaKnown RBP13.29□□□□□ -0.28
CLIP3-204ENST00000590559 PRR16Q569H4 304 aa13.29□□□□□ -0.28
CLIP3-204ENST00000590559 B3GNT9Q6UX72 402 aa13.29□□□□□ -0.28
CLIP3-204ENST00000590559 ZNF710Q8N1W2 664 aa13.29□□□□□ -0.28
CLIP3-204ENST00000590559 SLC5A5Q92911 643 aa13.29□□□□□ -0.28
CLIP3-204ENST00000590559 PHKBQ93100 1093 aa13.29□□□□□ -0.28
CLIP3-204ENST00000590559 FBXL18Q96ME1 805 aa13.29□□□□□ -0.28
CLIP3-204ENST00000590559 PPP1R16BQ96T49 567 aa13.29□□□□□ -0.28
CLIP3-204ENST00000590559 CDCA3Q99618 268 aaPredicted RBP13.29□□□□□ -0.28
CLIP3-204ENST00000590559 TMEM117Q9H0C3 514 aa13.29□□□□□ -0.28
CLIP3-204ENST00000590559 S1PR5Q9H228 398 aa13.29□□□□□ -0.28
CLIP3-204ENST00000590559 TLE6Q9H808 572 aa13.29□□□□□ -0.28
CLIP3-204ENST00000590559 ATP6V0A4Q9HBG4 840 aa13.29□□□□□ -0.28
CLIP3-204ENST00000590559 AAASQ9NRG9 546 aa13.29□□□□□ -0.28
CLIP3-204ENST00000590559 USP15Q9Y4E8 981 aaPredicted RBP13.29□□□□□ -0.28
CLIP3-204ENST00000590559 FSD2A1L4K1 749 aa13.28□□□□□ -0.28
CLIP3-204ENST00000590559 PER2O15055 1255 aa13.28□□□□□ -0.28
CLIP3-204ENST00000590559 STBD1O95210 358 aa13.28□□□□□ -0.28
CLIP3-204ENST00000590559 LAG3P18627 525 aa13.28□□□□□ -0.28
CLIP3-204ENST00000590559 EIF4BP23588 611 aaKnown RBP13.28□□□□□ -0.28
CLIP3-204ENST00000590559 USP11P51784 963 aa13.28□□□□□ -0.28
CLIP3-204ENST00000590559 NHLH1Q02575 133 aa13.28□□□□□ -0.28
CLIP3-204ENST00000590559 UGCGQ16739 394 aa13.28□□□□□ -0.28
CLIP3-204ENST00000590559 EFCAB12Q6NXP0 572 aa13.28□□□□□ -0.28
CLIP3-204ENST00000590559 ZNF598Q86UK7 904 aaKnown RBP13.28□□□□□ -0.28
CLIP3-204ENST00000590559 CKAP2LQ8IYA6 745 aa13.28□□□□□ -0.28
CLIP3-204ENST00000590559 METTL13Q8N6R0 699 aa13.28□□□□□ -0.28
CLIP3-204ENST00000590559 BICD2Q8TD16 824 aa13.28□□□□□ -0.28
Retrieved 100 of 20,778 RNA–protein pairs in 29.8 ms