RNA–Protein interactions for RNA: ENST00000590181.5

LIG3-212, Transcript of DNA ligase 3, humanhuman

TSL 1 (best)

Gene LIG3, Length 1,156 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIG3-212ENST00000590181 PPP2R5CQ13362 524 aa11.82□□□□□ -0.52
LIG3-212ENST00000590181 NPY5RQ15761 445 aa11.82□□□□□ -0.52
LIG3-212ENST00000590181 ME3Q16798 604 aa11.82□□□□□ -0.52
LIG3-212ENST00000590181 EPC2Q52LR7 807 aa11.82□□□□□ -0.52
LIG3-212ENST00000590181 XKR3Q5GH77 459 aa11.82□□□□□ -0.52
LIG3-212ENST00000590181 FBXO47Q5MNV8 452 aa11.82□□□□□ -0.52
LIG3-212ENST00000590181 CCDC60Q8IWA6 550 aaPredicted RBP11.82□□□□□ -0.52
LIG3-212ENST00000590181 MAP7D2Q96T17 732 aa11.82□□□□□ -0.52
LIG3-212ENST00000590181 NIFKQ9BYG3 293 aaKnown RBP11.82□□□□□ -0.52
LIG3-212ENST00000590181 FAM50BQ9Y247 325 aa11.82□□□□□ -0.52
LIG3-212ENST00000590181 USP34Q70CQ2 3546 aa11.82□□□□□ -0.52
LIG3-212ENST00000590181 MYO7AQ13402 2215 aa11.81□□□□□ -0.52
LIG3-212ENST00000590181 CARNS1A5YM72 827 aa11.81□□□□□ -0.52
LIG3-212ENST00000590181 DDX39AO00148 427 aaKnown RBP11.81□□□□□ -0.52
LIG3-212ENST00000590181 GAS2O43903 313 aaKnown RBP11.81□□□□□ -0.52
LIG3-212ENST00000590181 MARCH6O60337 910 aa11.81□□□□□ -0.52
LIG3-212ENST00000590181 RB1P06400 928 aa11.81□□□□□ -0.52
LIG3-212ENST00000590181 MCM2P49736 904 aa11.81□□□□□ -0.52
LIG3-212ENST00000590181 PSMC5P62195 406 aa11.81□□□□□ -0.52
LIG3-212ENST00000590181 IGBP1P78318 339 aa11.81□□□□□ -0.52
LIG3-212ENST00000590181 GPM6BQ13491 265 aa11.81□□□□□ -0.52
LIG3-212ENST00000590181 LPIN1Q14693 890 aa11.81□□□□□ -0.52
LIG3-212ENST00000590181 NAALADL2Q58DX5 795 aa11.81□□□□□ -0.52
LIG3-212ENST00000590181 TCEAL5Q5H9L2 206 aa11.81□□□□□ -0.52
LIG3-212ENST00000590181 B3GNT9Q6UX72 402 aa11.81□□□□□ -0.52
LIG3-212ENST00000590181 RUFY4Q6ZNE9 571 aa11.81□□□□□ -0.52
LIG3-212ENST00000590181 MIER3Q7Z3K6 550 aa11.81□□□□□ -0.52
LIG3-212ENST00000590181 KIAA0319LQ8IZA0 1049 aa11.81□□□□□ -0.52
LIG3-212ENST00000590181 BANK1Q8NDB2 785 aa11.81□□□□□ -0.52
LIG3-212ENST00000590181 ETNPPLQ8TBG4 499 aa11.81□□□□□ -0.52
LIG3-212ENST00000590181 RASGRP4Q8TDF6 673 aa11.81□□□□□ -0.52
LIG3-212ENST00000590181 PABPC5Q96DU9 382 aaKnown RBP11.81□□□□□ -0.52
LIG3-212ENST00000590181 FBXL18Q96ME1 805 aa11.81□□□□□ -0.52
LIG3-212ENST00000590181 YME1L1Q96TA2 773 aa11.81□□□□□ -0.52
LIG3-212ENST00000590181 INO80BQ9C086 356 aaPredicted RBP11.81□□□□□ -0.52
LIG3-212ENST00000590181 KCNH6Q9H252 994 aa11.81□□□□□ -0.52
LIG3-212ENST00000590181 NSUN3Q9H649 340 aaKnown RBP11.81□□□□□ -0.52
LIG3-212ENST00000590181 KCNMB3Q9NPA1 279 aa11.81□□□□□ -0.52
LIG3-212ENST00000590181 C1orf112Q9NSG2 853 aa11.81□□□□□ -0.52
LIG3-212ENST00000590181 GABBR1Q9UBS5 961 aa11.81□□□□□ -0.52
LIG3-212ENST00000590181 CDY2AQ9Y6F7 541 aa11.81□□□□□ -0.52
LIG3-212ENST00000590181 LOXHD1Q8IVV2 1947 aa11.8□□□□□ -0.52
LIG3-212ENST00000590181 H3BNC9 293 aa11.8□□□□□ -0.52
LIG3-212ENST00000590181 ENPP3O14638 875 aa11.8□□□□□ -0.52
LIG3-212ENST00000590181 NCK2O43639 380 aa11.8□□□□□ -0.52
LIG3-212ENST00000590181 ST18O60284 1047 aa11.8□□□□□ -0.52
LIG3-212ENST00000590181 CTDNEP1O95476 244 aa11.8□□□□□ -0.52
LIG3-212ENST00000590181 MMP1P03956 469 aa11.8□□□□□ -0.52
LIG3-212ENST00000590181 OATP04181 439 aa11.8□□□□□ -0.52
LIG3-212ENST00000590181 P4HBP07237 508 aaKnown RBP11.8□□□□□ -0.52
LIG3-212ENST00000590181 CTSHP09668 335 aa11.8□□□□□ -0.52
LIG3-212ENST00000590181 PAK2Q13177 524 aa11.8□□□□□ -0.52
LIG3-212ENST00000590181 INF2Q27J81 1249 aa11.8□□□□□ -0.52
LIG3-212ENST00000590181 LETM2Q2VYF4 491 aa11.8□□□□□ -0.52
LIG3-212ENST00000590181 OTUD6AQ7L8S5 288 aa11.8□□□□□ -0.52
LIG3-212ENST00000590181 LARP6Q9BRS8 491 aaKnown RBP11.8□□□□□ -0.52
LIG3-212ENST00000590181 PLVAPQ9BX97 442 aa11.8□□□□□ -0.52
LIG3-212ENST00000590181 CLDND1Q9NY35 253 aa11.8□□□□□ -0.52
LIG3-212ENST00000590181 PRKAG3Q9UGI9 489 aa11.8□□□□□ -0.52
LIG3-212ENST00000590181 TELO2Q9Y4R8 837 aa11.8□□□□□ -0.52
LIG3-212ENST00000590181 TECTAO75443 2155 aa11.79□□□□□ -0.52
LIG3-212ENST00000590181 ZBTB42B2RXF5 422 aa11.79□□□□□ -0.52
LIG3-212ENST00000590181 EDIL3O43854 480 aa11.79□□□□□ -0.52
LIG3-212ENST00000590181 CCNT1O60563 726 aaKnown RBP11.79□□□□□ -0.52
LIG3-212ENST00000590181 UPP2O95045 317 aa11.79□□□□□ -0.52
LIG3-212ENST00000590181 C22orf31O95567 290 aa11.79□□□□□ -0.52
LIG3-212ENST00000590181 XRCC6P12956 609 aaKnown RBP eCLIP11.79□□□□□ -0.52
LIG3-212ENST00000590181 FDPSP14324 419 aaKnown RBP11.79□□□□□ -0.52
LIG3-212ENST00000590181 ATP4AP20648 1035 aa11.79□□□□□ -0.52
LIG3-212ENST00000590181 CTNNB1P35222 781 aa11.79□□□□□ -0.52
LIG3-212ENST00000590181 QARSP47897 775 aaKnown RBP11.79□□□□□ -0.52
LIG3-212ENST00000590181 TBC1D8BQ0IIM8 1120 aa11.79□□□□□ -0.52
LIG3-212ENST00000590181 COL19A1Q14993 1142 aa11.79□□□□□ -0.52
LIG3-212ENST00000590181 RABEP1Q15276 862 aa11.79□□□□□ -0.52
LIG3-212ENST00000590181 PCBP1Q15365 356 aaKnown RBP eCLIP11.79□□□□□ -0.52
LIG3-212ENST00000590181 HFE2Q6ZVN8 426 aa11.79□□□□□ -0.52
LIG3-212ENST00000590181 NPAS4Q8IUM7 802 aa11.79□□□□□ -0.52
LIG3-212ENST00000590181 ADHFE1Q8IWW8 467 aa11.79□□□□□ -0.52
LIG3-212ENST00000590181 TMEM192Q8IY95 271 aa11.79□□□□□ -0.52
LIG3-212ENST00000590181 NSUN7Q8NE18 718 aaKnown RBP11.79□□□□□ -0.52
LIG3-212ENST00000590181 FAM49AQ9H0Q0 323 aaPredicted RBP11.79□□□□□ -0.52
LIG3-212ENST00000590181 FOXP1Q9H334 677 aaPredicted RBP11.79□□□□□ -0.52
LIG3-212ENST00000590181 UNC45AQ9H3U1 944 aa11.79□□□□□ -0.52
LIG3-212ENST00000590181 KCNJ14Q9UNX9 436 aa11.79□□□□□ -0.52
LIG3-212ENST00000590181 STK24Q9Y6E0 443 aa11.79□□□□□ -0.52
LIG3-212ENST00000590181 LOC101059915A0A1B0GWI6 518 aaPredicted RBP11.78□□□□□ -0.52
LIG3-212ENST00000590181 C19orf67A6NJJ6 358 aa11.78□□□□□ -0.52
LIG3-212ENST00000590181 C5orf67F2Z3F1 127 aa11.78□□□□□ -0.52
LIG3-212ENST00000590181 ASAP2O43150 1006 aa11.78□□□□□ -0.52
LIG3-212ENST00000590181 HOXA2O43364 376 aa11.78□□□□□ -0.52
LIG3-212ENST00000590181 RPS6KA5O75582 802 aa11.78□□□□□ -0.52
LIG3-212ENST00000590181 GHRP10912 638 aa11.78□□□□□ -0.52
LIG3-212ENST00000590181 EIF4BP23588 611 aaKnown RBP11.78□□□□□ -0.52
LIG3-212ENST00000590181 IRS1P35568 1242 aa11.78□□□□□ -0.52
LIG3-212ENST00000590181 TRAPPC10P48553 1259 aa11.78□□□□□ -0.52
LIG3-212ENST00000590181 PRKCEQ02156 737 aa11.78□□□□□ -0.52
LIG3-212ENST00000590181 EPHA7Q15375 998 aa11.78□□□□□ -0.52
LIG3-212ENST00000590181 TARBP2Q15633 366 aaKnown RBP11.78□□□□□ -0.52
LIG3-212ENST00000590181 CLUL1Q15846 466 aa11.78□□□□□ -0.52
LIG3-212ENST00000590181 C8orf34Q49A92 452 aa11.78□□□□□ -0.52
Retrieved 100 of 20,778 RNA–protein pairs in 17.5 ms